FC869008

Overview
NameFC869008
Unique NameFC869008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_YERPB (Porphobilinogen deaminase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=hemC PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.496e-23
Identity = 64/125 (51.20%), Postives = 78/125 (62.40%), Query Frame = 2
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            IIRI TR SPLAL QAH  ++ L A HP L     I++V + T GD IL  PLA +GGKGLF KE++ AL++ + DIAVHSMKDVP   PE   L    +RED RDAF+          PA S+V
Sbjct:    5 IIRIATRQSPLALWQAHYVQHLLQANHPGLQ----IELVPMVTRGDIILDTPLAKVGGKGLFVKELELALLDGRADIAVHSMKDVPIAFPEGLGLVAICEREDPRDAFVSSHYAHLDDLPAGSVV 125          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_GEOUR (Porphobilinogen deaminase OS=Geobacter uraniireducens (strain Rf4) GN=hemC PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.496e-23
Identity = 60/108 (55.56%), Postives = 74/108 (68.52%), Query Frame = 2
Query:  332 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI 655
            +RIGTR S LAL QA+  +++L   +P L     + ++ IKT GDKIL  PLA +GGKGLF KEI+EA++   IDIAVHSMKDVPT  PE   L C  +RED RDA I
Sbjct:    6 LRIGTRASQLALWQANWVKSELEKRYPGLE----VSLLKIKTIGDKILDVPLAQVGGKGLFVKEIEEAMLRGDIDIAVHSMKDVPTEFPEGLGLHCITEREDPRDAVI 109          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_ACIAD (Porphobilinogen deaminase OS=Acinetobacter sp. (strain ADP1) GN=hemC PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.496e-23
Identity = 58/108 (53.70%), Postives = 75/108 (69.44%), Query Frame = 2
Query:  332 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI 655
            ++I TR SPLAL QA   R++L AL+PEL     +++V   T GDKIL  PLA IGGKGLF KE++ AL++ + D+AVHSMKDVP +LPE   L    +RED  DAF+
Sbjct:    9 LKIATRQSPLALWQAEHIRDRLQALYPELK----VELVKFVTQGDKILDTPLAKIGGKGLFVKELEAALLDGRADLAVHSMKDVPMHLPEGLSLAVICEREDPLDAFV 112          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_YERPY (Porphobilinogen deaminase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=hemC PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.954e-23
Identity = 64/125 (51.20%), Postives = 78/125 (62.40%), Query Frame = 2
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            IIRI TR SPLAL QAH  ++ L A HP L     I++V + T GD IL  PLA +GGKGLF KE++ AL++ + DIAVHSMKDVP   PE   L    +RED RDAF+          PA S+V
Sbjct:    5 IIRIATRQSPLALWQAHYVQHLLQANHPGLQ----IELVPMVTRGDIILDTPLAKVGGKGLFVKELELALLDGRADIAVHSMKDVPIAFPEGLGLVTICEREDPRDAFVSSHYTHLDDLPAGSVV 125          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_YERPP (Porphobilinogen deaminase OS=Yersinia pestis (strain Pestoides F) GN=hemC PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.954e-23
Identity = 64/125 (51.20%), Postives = 78/125 (62.40%), Query Frame = 2
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            IIRI TR SPLAL QAH  ++ L A HP L     I++V + T GD IL  PLA +GGKGLF KE++ AL++ + DIAVHSMKDVP   PE   L    +RED RDAF+          PA S+V
Sbjct:    5 IIRIATRQSPLALWQAHYVQHLLQANHPGLQ----IELVPMVTRGDIILDTPLAKVGGKGLFVKELELALLDGRADIAVHSMKDVPIAFPEGLGLVTICEREDPRDAFVSSHYAHLDDLPAGSVV 125          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_YERPN (Porphobilinogen deaminase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=hemC PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.954e-23
Identity = 64/125 (51.20%), Postives = 78/125 (62.40%), Query Frame = 2
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            IIRI TR SPLAL QAH  ++ L A HP L     I++V + T GD IL  PLA +GGKGLF KE++ AL++ + DIAVHSMKDVP   PE   L    +RED RDAF+          PA S+V
Sbjct:    5 IIRIATRQSPLALWQAHYVQHLLQANHPGLQ----IELVPMVTRGDIILDTPLAKVGGKGLFVKELELALLDGRADIAVHSMKDVPIAFPEGLGLVTICEREDPRDAFVSSHYAHLDDLPAGSVV 125          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_YERPG (Porphobilinogen deaminase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=hemC PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.954e-23
Identity = 64/125 (51.20%), Postives = 78/125 (62.40%), Query Frame = 2
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            IIRI TR SPLAL QAH  ++ L A HP L     I++V + T GD IL  PLA +GGKGLF KE++ AL++ + DIAVHSMKDVP   PE   L    +RED RDAF+          PA S+V
Sbjct:    5 IIRIATRQSPLALWQAHYVQHLLQANHPGLQ----IELVPMVTRGDIILDTPLAKVGGKGLFVKELELALLDGRADIAVHSMKDVPIAFPEGLGLVTICEREDPRDAFVSSHYAHLDDLPAGSVV 125          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_YERPE (Porphobilinogen deaminase OS=Yersinia pestis GN=hemC PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.954e-23
Identity = 64/125 (51.20%), Postives = 78/125 (62.40%), Query Frame = 2
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            IIRI TR SPLAL QAH  ++ L A HP L     I++V + T GD IL  PLA +GGKGLF KE++ AL++ + DIAVHSMKDVP   PE   L    +RED RDAF+          PA S+V
Sbjct:    5 IIRIATRQSPLALWQAHYVQHLLQANHPGLQ----IELVPMVTRGDIILDTPLAKVGGKGLFVKELELALLDGRADIAVHSMKDVPIAFPEGLGLVTICEREDPRDAFVSSHYAHLDDLPAGSVV 125          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_YERPA (Porphobilinogen deaminase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=hemC PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.954e-23
Identity = 64/125 (51.20%), Postives = 78/125 (62.40%), Query Frame = 2
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            IIRI TR SPLAL QAH  ++ L A HP L     I++V + T GD IL  PLA +GGKGLF KE++ AL++ + DIAVHSMKDVP   PE   L    +RED RDAF+          PA S+V
Sbjct:    5 IIRIATRQSPLALWQAHYVQHLLQANHPGLQ----IELVPMVTRGDIILDTPLAKVGGKGLFVKELELALLDGRADIAVHSMKDVPIAFPEGLGLVTICEREDPRDAFVSSHYAHLDDLPAGSVV 125          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_YERP3 (Porphobilinogen deaminase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=hemC PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.954e-23
Identity = 64/125 (51.20%), Postives = 78/125 (62.40%), Query Frame = 2
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            IIRI TR SPLAL QAH  ++ L A HP L     I++V + T GD IL  PLA +GGKGLF KE++ AL++ + DIAVHSMKDVP   PE   L    +RED RDAF+          PA S+V
Sbjct:    5 IIRIATRQSPLALWQAHYVQHLLQANHPGLQ----IELVPMVTRGDIILDTPLAKVGGKGLFVKELELALLDGRADIAVHSMKDVPIAFPEGLGLVTICEREDPRDAFVSSHYAHLDDLPAGSVV 125          
The following BLAST results are available for this feature:
BLAST of FC869008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 432
Match NameE-valueIdentityDescription
HEM3_YERPB1.496e-2351.20Porphobilinogen deaminase OS=Yersinia pseudotuberc... [more]
HEM3_GEOUR1.496e-2355.56Porphobilinogen deaminase OS=Geobacter uraniireduc... [more]
HEM3_ACIAD1.496e-2353.70Porphobilinogen deaminase OS=Acinetobacter sp. (st... [more]
HEM3_YERPY1.954e-2351.20Porphobilinogen deaminase OS=Yersinia pseudotuberc... [more]
HEM3_YERPP1.954e-2351.20Porphobilinogen deaminase OS=Yersinia pestis (stra... [more]
HEM3_YERPN1.954e-2351.20Porphobilinogen deaminase OS=Yersinia pestis bv. A... [more]
HEM3_YERPG1.954e-2351.20Porphobilinogen deaminase OS=Yersinia pestis bv. A... [more]
HEM3_YERPE1.954e-2351.20Porphobilinogen deaminase OS=Yersinia pestis GN=he... [more]
HEM3_YERPA1.954e-2351.20Porphobilinogen deaminase OS=Yersinia pestis bv. A... [more]
HEM3_YERP31.954e-2351.20Porphobilinogen deaminase OS=Yersinia pseudotuberc... [more]

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Properties
Property NameValue
Genbank descriptionC31007E07EF AbioticL1 Citrus clementina cDNA clone C31007E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869008 ID=FC869008; Name=FC869008; organism=Citrus clementina; type=EST; length=703bp
GGAAGCAAAACATTACCAATCTCCGCTTCTAACTCGCTTTCTTCTTTTCT
TCTTTCATAAATAATTAGCACACTGTCTGTCCCCGTCTCTGTTTCTGATA
CTGGGCAGTCATCATTGTTGTTGTGTGTCAATGGAGAGTTTGAGTTTAGC
AGCTTCTTCTCTTTGTACAAGCCGGGGTGGCCCCATGGAGCGCCATTGCT
ATCCAGGGTCGGTCTCCCTTGTTGGGTTCTCTTCGCCACGCCTCAAGACT
CCGTCTTTTCCAAAGAGTTTGAAGAAACGCAGTTTTGGGCTTGTAAGAGC
CTCTGCTGCTGTTGAAACCAAGGTTGCAATCATCAGAATTGGCACCAGAG
GAAGCCCTCTGGCACTTGCTCAGGCTCATGAGACGCGAAACAAACTCATG
GCTTTGCATCCAGAGCTAGCTCAAGAGGGGGCGATTCAAATTGTAATAAT
AAAGACAACTGGTGATAAGATACTAAGTCAACCACTTGCAGACATTGGTG
GGAAGGGCTTGTTCACCAAAGAAATAGACGAGGCGCTGATAAATAGTCAA
ATTGACATCGCCGTGCACTCGATGAAAGATGTTCCAACATATTTACCAGA
GAAGACCATTCTACCTTGCAACCTTCAGCGGGAGGATGTCCGAGATGCAT
TTATTTCGTTGAGTGCAGCCTCTTTAGCAGAACTACCAGCNAGAAGCATT
GTT
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