FC869008

Overview
NameFC869008
Unique NameFC869008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9484 contig Ccv1_Contig9484:2..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_YERE8 (Porphobilinogen deaminase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=hemC PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.686e-23
Identity = 63/125 (50.40%), Postives = 77/125 (61.60%), Query Frame = 2
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            IIRI TR SPLAL QAH  ++ L A HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+  + DIAVHSMKDVP   PE   L    +R+D RDAF+          PA SIV
Sbjct:    5 IIRIATRQSPLALWQAHYVQHLLQANHPGLQ----VELVPMVTRGDIILDTPLAKVGGKGLFVKELELALLEGRADIAVHSMKDVPIAFPEGLGLVTICERDDPRDAFVSINYAHLDELPAGSIV 125          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_PELPD (Porphobilinogen deaminase OS=Pelobacter propionicus (strain DSM 2379) GN=hemC PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.427e-23
Identity = 57/108 (52.78%), Postives = 74/108 (68.52%), Query Frame = 2
Query:  332 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI 655
            +RIGTR S LAL QA+  +++L   +P +     + +  IKT GD+IL  PLA +GGKGLF KEI+EA++  +IDIAVHSMKDVPT  PE   L C  +RED RDA +
Sbjct:    6 LRIGTRASQLALWQANWVKSELEKRYPAME----VTLTKIKTMGDRILDVPLAQVGGKGLFVKEIEEAMLRGEIDIAVHSMKDVPTEFPEGLGLYCITEREDPRDAVV 109          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_MANSM (Porphobilinogen deaminase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=hemC PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23
Identity = 59/124 (47.58%), Postives = 79/124 (63.71%), Query Frame = 2
Query:  332 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            ++I TR SPLAL QA+  +++L AL+P+L     +++V + T GD IL  PLA IGGKGLF KE++ AL+N + DIAVHSMKDVP   P+   L    +RED RDAF+          P  +IV
Sbjct:    7 LKIATRQSPLALWQANYVKDRLTALYPDLQ----VELVTMVTKGDVILDTPLAKIGGKGLFVKELEHALLNHEADIAVHSMKDVPMEFPQGLGLSVICKREDPRDAFVSNKYRSLAELPQGAIV 126          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_ENTS8 (Porphobilinogen deaminase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=hemC PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23
Identity = 60/125 (48.00%), Postives = 77/125 (61.60%), Query Frame = 2
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            ++RI TR SPLAL QA   + +L A HP L     +++V + T GD IL  PLA +GGKGLF KE++ A+++ + DIAVHSMKDVP   PE   L    +RED RDAF+          PA SIV
Sbjct:    5 VLRIATRQSPLALWQAQYVKQRLEACHPGLT----VELVPMVTRGDVILDTPLAKVGGKGLFVKELELAMLDGRADIAVHSMKDVPVEFPEGLGLVTICEREDPRDAFVSNQYKSLDEMPAGSIV 125          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_ACIF5 (Porphobilinogen deaminase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=hemC PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23
Identity = 54/108 (50.00%), Postives = 74/108 (68.52%), Query Frame = 2
Query:  332 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI 655
            +RIGTR SPLA+ QA   R  L+ LHP +A    ++I+ + T+GD +L  PL  +GGKGLF KEI++AL   ++D+AVHSMKDVP   P+   +   + REDVRDAF+
Sbjct:    5 LRIGTRASPLAVWQAEHVRAALLRLHPGMA----VEIITMTTSGDVLLDAPLHALGGKGLFVKEIEDALQQRRVDVAVHSMKDVPALQPDGLEIVAIMAREDVRDAFV 108          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_ACIF2 (Porphobilinogen deaminase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=hemC PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23
Identity = 54/108 (50.00%), Postives = 74/108 (68.52%), Query Frame = 2
Query:  332 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI 655
            +RIGTR SPLA+ QA   R  L+ LHP +A    ++I+ + T+GD +L  PL  +GGKGLF KEI++AL   ++D+AVHSMKDVP   P+   +   + REDVRDAF+
Sbjct:    5 LRIGTRASPLAVWQAEHVRAALLRLHPGMA----VEIITMTTSGDVLLDAPLHALGGKGLFVKEIEDALQQRRVDVAVHSMKDVPALQPDGLEIVAIMAREDVRDAFV 108          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_SERP5 (Porphobilinogen deaminase OS=Serratia proteamaculans (strain 568) GN=hemC PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.267e-22
Identity = 61/125 (48.80%), Postives = 77/125 (61.60%), Query Frame = 2
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            IIRI TR SPLAL QAH  + +LMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL++ + DIAVHSMKDVP   P    L    +R+D RDAF+          P  S+V
Sbjct:    5 IIRIATRQSPLALWQAHYVQQRLMANHPGLQ----VELVPMVTKGDIILDTPLAKVGGKGLFVKELELALLDGRADIAVHSMKDVPVDFPAGLGLVTICERDDPRDAFVSNRFTSLDQLPQGSVV 125          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_METCA (Porphobilinogen deaminase OS=Methylococcus capsulatus GN=hemC PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.654e-22
Identity = 57/120 (47.50%), Postives = 74/120 (61.67%), Query Frame = 2
Query:  332 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPA 691
            +RI TR SPLAL QA    ++L A HP+L     +++V + T GDK+L  PLA +GGKGLF KE+++ L+  + DIAVHSMKDVP   PE   L   L+RED RDA +          PA
Sbjct:   18 LRIATRKSPLALWQAEYVASRLRAAHPDLR----VELVGMTTRGDKLLDAPLAKVGGKGLFVKELEQGLLEGRADIAVHSMKDVPVEFPEGLHLAAILEREDPRDALVSHRYRSFAELPA 133          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_YERIN (Porphobilinogen deaminase (Fragment) OS=Yersinia intermedia GN=hemC PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.161e-22
Identity = 62/125 (49.60%), Postives = 77/125 (61.60%), Query Frame = 2
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            IIRI TR SPLAL QAH  ++ L A HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL++ + DIAVHSMKDVP   PE   L    + +D RDAF+          PA SIV
Sbjct:    5 IIRIATRQSPLALWQAHYVQHLLQANHPGLQ----VELVPMVTRGDIILDTPLAKVGGKGLFVKELELALLDGRADIAVHSMKDVPVAFPEGLGLVTICEPDDPRDAFVSPHFAHIDDLPAGSIV 125          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_SYNFM (Porphobilinogen deaminase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=hemC PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.161e-22
Identity = 55/109 (50.46%), Postives = 74/109 (67.89%), Query Frame = 2
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI 655
            +IRIGTRGS LAL Q+   +  + AL P L     +++ +++TTGDKIL  PLA +GGKGLF KEI++AL+   +D+AVHSMKDVP  LPE   +    +RED RD  +
Sbjct:    5 VIRIGTRGSMLALKQSGNVKAAMEALWPGLR----VELQVVRTTGDKILDVPLAKVGGKGLFVKEIEDALLARTVDLAVHSMKDVPAILPEGLEIGAIPKREDPRDVIV 109          
The following BLAST results are available for this feature:
BLAST of FC869008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 432
Match NameE-valueIdentityDescription
HEM3_YERE85.686e-2350.40Porphobilinogen deaminase OS=Yersinia enterocoliti... [more]
HEM3_PELPD7.427e-2352.78Porphobilinogen deaminase OS=Pelobacter propionicu... [more]
HEM3_MANSM9.699e-2347.58Porphobilinogen deaminase OS=Mannheimia succinicip... [more]
HEM3_ENTS89.699e-2348.00Porphobilinogen deaminase OS=Enterobacter sakazaki... [more]
HEM3_ACIF59.699e-2350.00Porphobilinogen deaminase OS=Acidithiobacillus fer... [more]
HEM3_ACIF29.699e-2350.00Porphobilinogen deaminase OS=Acidithiobacillus fer... [more]
HEM3_SERP51.267e-2248.80Porphobilinogen deaminase OS=Serratia proteamacula... [more]
HEM3_METCA1.654e-2247.50Porphobilinogen deaminase OS=Methylococcus capsula... [more]
HEM3_YERIN2.161e-2249.60Porphobilinogen deaminase (Fragment) OS=Yersinia i... [more]
HEM3_SYNFM2.161e-2250.46Porphobilinogen deaminase OS=Syntrophobacter fumar... [more]

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Properties
Property NameValue
Genbank descriptionC31007E07EF AbioticL1 Citrus clementina cDNA clone C31007E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869008 ID=FC869008; Name=FC869008; organism=Citrus clementina; type=EST; length=703bp
GGAAGCAAAACATTACCAATCTCCGCTTCTAACTCGCTTTCTTCTTTTCT
TCTTTCATAAATAATTAGCACACTGTCTGTCCCCGTCTCTGTTTCTGATA
CTGGGCAGTCATCATTGTTGTTGTGTGTCAATGGAGAGTTTGAGTTTAGC
AGCTTCTTCTCTTTGTACAAGCCGGGGTGGCCCCATGGAGCGCCATTGCT
ATCCAGGGTCGGTCTCCCTTGTTGGGTTCTCTTCGCCACGCCTCAAGACT
CCGTCTTTTCCAAAGAGTTTGAAGAAACGCAGTTTTGGGCTTGTAAGAGC
CTCTGCTGCTGTTGAAACCAAGGTTGCAATCATCAGAATTGGCACCAGAG
GAAGCCCTCTGGCACTTGCTCAGGCTCATGAGACGCGAAACAAACTCATG
GCTTTGCATCCAGAGCTAGCTCAAGAGGGGGCGATTCAAATTGTAATAAT
AAAGACAACTGGTGATAAGATACTAAGTCAACCACTTGCAGACATTGGTG
GGAAGGGCTTGTTCACCAAAGAAATAGACGAGGCGCTGATAAATAGTCAA
ATTGACATCGCCGTGCACTCGATGAAAGATGTTCCAACATATTTACCAGA
GAAGACCATTCTACCTTGCAACCTTCAGCGGGAGGATGTCCGAGATGCAT
TTATTTCGTTGAGTGCAGCCTCTTTAGCAGAACTACCAGCNAGAAGCATT
GTT
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