FC869008

Overview
NameFC869008
Unique NameFC869008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_VIBPA (Porphobilinogen deaminase OS=Vibrio parahaemolyticus GN=hemC PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.822e-22
Identity = 59/129 (45.74%), Postives = 77/129 (59.69%), Query Frame = 2
Query:  317 TKVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            T+   IRI TR SPLAL QAH  ++ L A HP L     +++V + T GD IL  PLA +GGKGLF KE++ A++  + D+AVHSMKDVP   PE   L    +RED RDAF+          P  ++V
Sbjct:    2 TQSTPIRIATRKSPLALWQAHFVKDALQAAHPGLE----VELVTMVTKGDVILDTPLAKVGGKGLFVKELEVAMLEGRADLAVHSMKDVPVDFPEGLGLVTICEREDPRDAFVSNTYSNINELPQGAVV 126          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_PSEPF (Porphobilinogen deaminase OS=Pseudomonas fluorescens (strain Pf0-1) GN=hemC PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.822e-22
Identity = 61/124 (49.19%), Postives = 76/124 (61.29%), Query Frame = 2
Query:  332 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            IRI TR S LAL QA   + +L A HP L     + +V + + GDK+L  PL+ IGGKGLF KE++ AL+ ++ DIAVHSMKDVP   PE   L C  +RED RDAF+          PA SIV
Sbjct:    6 IRIATRKSALALWQAEYVKARLEAAHPGLL----VTLVPMVSRGDKLLDSPLSKIGGKGLFVKELETALLENEADIAVHSMKDVPMDFPEGLGLFCICEREDPRDAFVSNTYSSLDALPAGSIV 125          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_VIBSL (Porphobilinogen deaminase OS=Vibrio splendidus (strain LGP32) GN=hemC PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.686e-22
Identity = 60/129 (46.51%), Postives = 77/129 (59.69%), Query Frame = 2
Query:  317 TKVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            T  A IRI TR SPLAL QA+  R+ L A HP L     +++V + T GD IL  PLA +GGKGLF KE++ A++  + D+AVHSMKDVP   PE   L    +RED RDAF+          P  ++V
Sbjct:    2 TNSAPIRIATRKSPLALWQAYFVRDALQAAHPGLE----VELVTMVTKGDIILDTPLAKVGGKGLFVKELEVAMLEGRADLAVHSMKDVPVDFPEGLGLVTICEREDPRDAFVSNTYNNIDELPQGAVV 126          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_VIBHB (Porphobilinogen deaminase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=hemC PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.686e-22
Identity = 59/129 (45.74%), Postives = 77/129 (59.69%), Query Frame = 2
Query:  317 TKVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            T+   IRI TR SPLAL QAH  ++ L A HP L     +++V + T GD IL  PLA +GGKGLF KE++ A++  + D+AVHSMKDVP   PE   L    +RED RDAF+          P  ++V
Sbjct:    2 TQSTPIRIATRKSPLALWQAHFVKDALQAAHPGLE----VELVTMVTKGDIILDTPLAKVGGKGLFVKELEVAMLEGRADLAVHSMKDVPVDFPEGLGLVTICEREDPRDAFVSNTYNNIDELPQGAVV 126          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_PSEPW (Porphobilinogen deaminase OS=Pseudomonas putida (strain W619) GN=hemC PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.686e-22
Identity = 61/124 (49.19%), Postives = 76/124 (61.29%), Query Frame = 2
Query:  332 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            IRI TR S LAL QA   + +L   HP L     + +V + + GDK+L  PLA IGGKGLF KE++ AL++++ DIAVHSMKDVP   PE   L C  +RED RDAF+          PA SIV
Sbjct:    6 IRIATRKSALALWQAEYVKARLEQAHPGLL----VTLVPMVSRGDKLLDAPLAKIGGKGLFVKELETALLDNEADIAVHSMKDVPMDFPEGLGLYCICEREDPRDAFVSNRFSSLDALPAGSIV 125          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_PSEPG (Porphobilinogen deaminase OS=Pseudomonas putida (strain GB-1) GN=hemC PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.686e-22
Identity = 61/124 (49.19%), Postives = 76/124 (61.29%), Query Frame = 2
Query:  332 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            IRI TR S LAL QA   + +L   HP L     + +V + + GDK+L  PLA IGGKGLF KE++ AL++++ DIAVHSMKDVP   PE   L C  +RED RDAF+          PA SIV
Sbjct:    6 IRIATRKSALALWQAEYVKARLEQAHPGLL----VTLVPMVSRGDKLLDAPLAKIGGKGLFVKELETALLDNEADIAVHSMKDVPMDFPEGLGLYCICEREDPRDAFVSNTFDSLEALPAGSIV 125          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_PSEE4 (Porphobilinogen deaminase OS=Pseudomonas entomophila (strain L48) GN=hemC PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.686e-22
Identity = 60/124 (48.39%), Postives = 76/124 (61.29%), Query Frame = 2
Query:  332 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            IRI TR S LAL QA   + +L   HP L     + +V + + GDK+L  PLA IGGKGLF KE++ AL++++ DIAVHSMKDVP   PE   L C  +RED RDAF+          PA S+V
Sbjct:    6 IRIATRKSALALWQAEYVKARLEQAHPGLQ----VSLVPMVSRGDKLLDAPLAKIGGKGLFVKELETALLDNEADIAVHSMKDVPMDFPEGLGLYCICEREDPRDAFVSNTFKSLEALPAGSVV 125          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_WOLSU (Porphobilinogen deaminase OS=Wolinella succinogenes GN=hemC PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.814e-22
Identity = 56/108 (51.85%), Postives = 73/108 (67.59%), Query Frame = 2
Query:  332 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI 655
            I IGTRGS LAL QA   + +L   H  L+    +++ I+KT GDKIL  PLA +GGKGLFTKE++E ++  +ID+AVHS+KDVP  L E   L    +REDVRD F+
Sbjct:    4 IIIGTRGSVLALWQAEYVKAELERAHEGLS----VELKIVKTKGDKILDVPLAKVGGKGLFTKELEEMMLQGEIDLAVHSLKDVPVELIEGLTLSAITEREDVRDCFL 107          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_VIBFM (Porphobilinogen deaminase OS=Vibrio fischeri (strain MJ11) GN=hemC PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.814e-22
Identity = 57/124 (45.97%), Postives = 75/124 (60.48%), Query Frame = 2
Query:  332 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            +RI TR SPLAL QAH  ++ L A HP L     +++V + T GD IL  PLA +GGKGLF KE++ A++  + D+AVHSMKDVP   PE   L    +RED RDAF+          P  ++V
Sbjct:    7 VRIATRKSPLALWQAHFVKDALQAAHPGLE----VELVTMVTKGDIILDTPLAKVGGKGLFVKELEVAMLEGRADLAVHSMKDVPVEFPEGLGLVTICEREDPRDAFVSNTYNNIDELPQGAVV 126          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_VIBF1 (Porphobilinogen deaminase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=hemC PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.814e-22
Identity = 57/124 (45.97%), Postives = 75/124 (60.48%), Query Frame = 2
Query:  332 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            +RI TR SPLAL QAH  ++ L A HP L     +++V + T GD IL  PLA +GGKGLF KE++ A++  + D+AVHSMKDVP   PE   L    +RED RDAF+          P  ++V
Sbjct:    7 VRIATRKSPLALWQAHFVKDALQAAHPGLE----VELVTMVTKGDIILDTPLAKVGGKGLFVKELEVAMLEGRADLAVHSMKDVPVEFPEGLGLVTICEREDPRDAFVSNTYNNIDELPQGAVV 126          
The following BLAST results are available for this feature:
BLAST of FC869008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 432
Match NameE-valueIdentityDescription
HEM3_VIBPA2.822e-2245.74Porphobilinogen deaminase OS=Vibrio parahaemolytic... [more]
HEM3_PSEPF2.822e-2249.19Porphobilinogen deaminase OS=Pseudomonas fluoresce... [more]
HEM3_VIBSL3.686e-2246.51Porphobilinogen deaminase OS=Vibrio splendidus (st... [more]
HEM3_VIBHB3.686e-2245.74Porphobilinogen deaminase OS=Vibrio harveyi (strai... [more]
HEM3_PSEPW3.686e-2249.19Porphobilinogen deaminase OS=Pseudomonas putida (s... [more]
HEM3_PSEPG3.686e-2249.19Porphobilinogen deaminase OS=Pseudomonas putida (s... [more]
HEM3_PSEE43.686e-2248.39Porphobilinogen deaminase OS=Pseudomonas entomophi... [more]
HEM3_WOLSU4.814e-2251.85Porphobilinogen deaminase OS=Wolinella succinogene... [more]
HEM3_VIBFM4.814e-2245.97Porphobilinogen deaminase OS=Vibrio fischeri (stra... [more]
HEM3_VIBF14.814e-2245.97Porphobilinogen deaminase OS=Vibrio fischeri (stra... [more]

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Properties
Property NameValue
Genbank descriptionC31007E07EF AbioticL1 Citrus clementina cDNA clone C31007E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869008 ID=FC869008; Name=FC869008; organism=Citrus clementina; type=EST; length=703bp
GGAAGCAAAACATTACCAATCTCCGCTTCTAACTCGCTTTCTTCTTTTCT
TCTTTCATAAATAATTAGCACACTGTCTGTCCCCGTCTCTGTTTCTGATA
CTGGGCAGTCATCATTGTTGTTGTGTGTCAATGGAGAGTTTGAGTTTAGC
AGCTTCTTCTCTTTGTACAAGCCGGGGTGGCCCCATGGAGCGCCATTGCT
ATCCAGGGTCGGTCTCCCTTGTTGGGTTCTCTTCGCCACGCCTCAAGACT
CCGTCTTTTCCAAAGAGTTTGAAGAAACGCAGTTTTGGGCTTGTAAGAGC
CTCTGCTGCTGTTGAAACCAAGGTTGCAATCATCAGAATTGGCACCAGAG
GAAGCCCTCTGGCACTTGCTCAGGCTCATGAGACGCGAAACAAACTCATG
GCTTTGCATCCAGAGCTAGCTCAAGAGGGGGCGATTCAAATTGTAATAAT
AAAGACAACTGGTGATAAGATACTAAGTCAACCACTTGCAGACATTGGTG
GGAAGGGCTTGTTCACCAAAGAAATAGACGAGGCGCTGATAAATAGTCAA
ATTGACATCGCCGTGCACTCGATGAAAGATGTTCCAACATATTTACCAGA
GAAGACCATTCTACCTTGCAACCTTCAGCGGGAGGATGTCCGAGATGCAT
TTATTTCGTTGAGTGCAGCCTCTTTAGCAGAACTACCAGCNAGAAGCATT
GTT
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