FC869008

Overview
NameFC869008
Unique NameFC869008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9484 contig Ccv1_Contig9484:2..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_HYPNA (Porphobilinogen deaminase OS=Hyphomonas neptunium (strain ATCC 15444) GN=hemC PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.401e-21
Identity = 55/110 (50.00%), Postives = 75/110 (68.18%), Query Frame = 2
Query:  332 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAI--QIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI 655
            +R+GTRGSPLALAQAH+  + + A     A  GA   +IV   TTGDK+ ++ L + GGKGLFT+E+D+AL   ++D+AVHS+KDVP+ LP   I     +RED RD F+
Sbjct:   13 LRLGTRGSPLALAQAHQIADGIRA-----ASAGAYDCEIVAFTTTGDKLTTERLINSGGKGLFTRELDDALSRGELDLAVHSLKDVPSVLPPGQIFAAFPKREDPRDGFL 117          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_CAMFF (Porphobilinogen deaminase OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=hemC PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.401e-21
Identity = 54/108 (50.00%), Postives = 71/108 (65.74%), Query Frame = 2
Query:  332 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI 655
            I+I +R S LAL Q H  R+ L      +AQ  +++I+ +KT GD IL  PLA IGGKGLFTKE++ +++    DIAVHS+KDVPT  P+   L C   REDVRDA +
Sbjct:    3 IKIASRNSALALWQTHHIRDLL------IAQGHSVEIITMKTKGDVILDTPLAKIGGKGLFTKELENSMLEGSADIAVHSLKDVPTTFPDGLKLACVCSREDVRDAML 104          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_WOLWR (Porphobilinogen deaminase OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=hemC PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.829e-21
Identity = 55/109 (50.46%), Postives = 74/109 (67.89%), Query Frame = 2
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI 655
            +++IGTRGS LA+ QA E + KL+   P L+    I+IV IKT+GDK  +  LA+IGGKGLF KEI+  L+ + ID+AVHS+KDVP +      +PC L+R    DAFI
Sbjct:    2 LVKIGTRGSKLAVVQALEAKQKLLDSFPNLS----IEIVKIKTSGDKYANANLAEIGGKGLFIKEIEAELLENNIDMAVHSLKDVPAFFSWGLTIPCVLERLSPCDAFI 106          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_EHRCR (Porphobilinogen deaminase OS=Ehrlichia chaffeensis (strain Arkansas) GN=hemC PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.829e-21
Identity = 56/108 (51.85%), Postives = 73/108 (67.59%), Query Frame = 2
Query:  332 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI 655
            IRIGTRGS LA+AQ  E +N L    PE++    +QIV IKT+GD     PL+ IGGK LF KEI+EAL+  ++D+AVHS+KD+P +  E  I+PC L+R    D FI
Sbjct:    3 IRIGTRGSILAIAQTLEIKNLLNRYFPEIS----VQIVKIKTSGDINNQVPLSAIGGKSLFIKEIEEALLMGKVDLAVHSVKDIPAFYCEGLIIPCVLKRNSPYDVFI 106          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_SHEWM (Porphobilinogen deaminase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=hemC PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.389e-21
Identity = 56/125 (44.80%), Postives = 76/125 (60.80%), Query Frame = 2
Query:  329 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            +IRI TR SPLAL QA   + +L   HP+L     ++++ + T GD IL  PLA +GGKGLF KE++ A++ ++ DIAVHSMKDVP   PE   L    +RED RDAF+          P  ++V
Sbjct:    5 VIRIATRKSPLALWQAEFVKAELEKFHPDLT----VELLPMSTKGDIILDTPLAKVGGKGLFVKELEVAMLENRADIAVHSMKDVPVDFPEGLGLEIICEREDPRDAFVSNNYKSISELPKGAVV 125          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_RICCK (Porphobilinogen deaminase OS=Rickettsia canadensis (strain McKiel) GN=hemC PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.389e-21
Identity = 56/124 (45.16%), Postives = 78/124 (62.90%), Query Frame = 2
Query:  332 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            IRIGTR SPLAL Q +    ++    P++  +    IV I T+GD I ++PL DIGGK LF KEI++AL++ +ID+AVHS+KDVP  +PE  I+   L+RED RD F+          P  +I+
Sbjct:    5 IRIGTRKSPLALIQTNLVIQQIKQFVPDINYK----IVPITTSGDLIQNKPLYDIGGKALFLKEIEQALLDKKIDLAVHSLKDVPGRIPEDLIIAAVLEREDPRDVFVCLKYKSIEELPQNAII 124          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_PASMU (Porphobilinogen deaminase OS=Pasteurella multocida GN=hemC PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.389e-21
Identity = 58/124 (46.77%), Postives = 75/124 (60.48%), Query Frame = 2
Query:  332 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            +RI TR SPLAL QA+  +  L  +H  L     +++V + T GD IL  PLA IGGKGLF KE+++AL+  + DIAVHSMKDVP   P   +L    QRED RDAF+          PA ++V
Sbjct:    7 LRIATRQSPLALWQANYVKACLEKIHAGLV----VELVPMVTKGDVILDTPLAKIGGKGLFVKELEQALLKGEADIAVHSMKDVPMQFPAGLMLSTICQREDPRDAFVSNSYRTLMELPAGAVV 126          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_PSEPK (Porphobilinogen deaminase OS=Pseudomonas putida (strain KT2440) GN=hemC PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 60/124 (48.39%), Postives = 75/124 (60.48%), Query Frame = 2
Query:  332 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            IRI TR S LAL QA   + +L   H  L     + +V + + GDK+L  PLA IGGKGLF KE++ AL++++ DIAVHSMKDVP   PE   L C  +RED RDAF+          PA SIV
Sbjct:    6 IRIATRKSALALWQAEYVKARLEQAHTGLQ----VTLVPMVSRGDKLLDAPLAKIGGKGLFVKELETALLDNEADIAVHSMKDVPMDFPEGLGLYCICEREDPRDAFVSNTFDSLEALPAGSIV 125          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_PSEP1 (Porphobilinogen deaminase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=hemC PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 60/124 (48.39%), Postives = 75/124 (60.48%), Query Frame = 2
Query:  332 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            IRI TR S LAL QA   + +L   H  L     + +V + + GDK+L  PLA IGGKGLF KE++ AL++++ DIAVHSMKDVP   PE   L C  +RED RDAF+          PA SIV
Sbjct:    6 IRIATRKSALALWQAEYVKARLEQAHTGLQ----VTLVPMVSRGDKLLDAPLAKIGGKGLFVKELETALLDNEADIAVHSMKDVPMDFPEGLGLYCICEREDPRDAFVSNTFDSLETLPAGSIV 125          
BLAST of FC869008 vs. ExPASy Swiss-Prot
Match: HEM3_PSEFS (Porphobilinogen deaminase OS=Pseudomonas fluorescens (strain SBW25) GN=hemC PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 59/124 (47.58%), Postives = 74/124 (59.68%), Query Frame = 2
Query:  332 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPARSIV 703
            IRI TR S LAL QA   + +L   HP L     + +V + + GDK+L  PL+ IGGKGLF KE++ AL+ ++ DIAVHSMKDVP   PE   L C  +RED RDAF+          P  SIV
Sbjct:    6 IRIATRKSALALWQAEYVKARLEQAHPGLK----VSLVPMVSRGDKLLDSPLSKIGGKGLFVKELETALLENEADIAVHSMKDVPMDFPEGLGLFCICEREDPRDAFVSNTYASLDALPLGSIV 125          
The following BLAST results are available for this feature:
BLAST of FC869008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 432
Match NameE-valueIdentityDescription
HEM3_HYPNA1.401e-2150.00Porphobilinogen deaminase OS=Hyphomonas neptunium ... [more]
HEM3_CAMFF1.401e-2150.00Porphobilinogen deaminase OS=Campylobacter fetus s... [more]
HEM3_WOLWR1.829e-2150.46Porphobilinogen deaminase OS=Wolbachia sp. subsp. ... [more]
HEM3_EHRCR1.829e-2151.85Porphobilinogen deaminase OS=Ehrlichia chaffeensis... [more]
HEM3_SHEWM2.389e-2144.80Porphobilinogen deaminase OS=Shewanella woodyi (st... [more]
HEM3_RICCK2.389e-2145.16Porphobilinogen deaminase OS=Rickettsia canadensis... [more]
HEM3_PASMU2.389e-2146.77Porphobilinogen deaminase OS=Pasteurella multocida... [more]
HEM3_PSEPK3.120e-2148.39Porphobilinogen deaminase OS=Pseudomonas putida (s... [more]
HEM3_PSEP13.120e-2148.39Porphobilinogen deaminase OS=Pseudomonas putida (s... [more]
HEM3_PSEFS3.120e-2147.58Porphobilinogen deaminase OS=Pseudomonas fluoresce... [more]

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Properties
Property NameValue
Genbank descriptionC31007E07EF AbioticL1 Citrus clementina cDNA clone C31007E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869008 ID=FC869008; Name=FC869008; organism=Citrus clementina; type=EST; length=703bp
GGAAGCAAAACATTACCAATCTCCGCTTCTAACTCGCTTTCTTCTTTTCT
TCTTTCATAAATAATTAGCACACTGTCTGTCCCCGTCTCTGTTTCTGATA
CTGGGCAGTCATCATTGTTGTTGTGTGTCAATGGAGAGTTTGAGTTTAGC
AGCTTCTTCTCTTTGTACAAGCCGGGGTGGCCCCATGGAGCGCCATTGCT
ATCCAGGGTCGGTCTCCCTTGTTGGGTTCTCTTCGCCACGCCTCAAGACT
CCGTCTTTTCCAAAGAGTTTGAAGAAACGCAGTTTTGGGCTTGTAAGAGC
CTCTGCTGCTGTTGAAACCAAGGTTGCAATCATCAGAATTGGCACCAGAG
GAAGCCCTCTGGCACTTGCTCAGGCTCATGAGACGCGAAACAAACTCATG
GCTTTGCATCCAGAGCTAGCTCAAGAGGGGGCGATTCAAATTGTAATAAT
AAAGACAACTGGTGATAAGATACTAAGTCAACCACTTGCAGACATTGGTG
GGAAGGGCTTGTTCACCAAAGAAATAGACGAGGCGCTGATAAATAGTCAA
ATTGACATCGCCGTGCACTCGATGAAAGATGTTCCAACATATTTACCAGA
GAAGACCATTCTACCTTGCAACCTTCAGCGGGAGGATGTCCGAGATGCAT
TTATTTCGTTGAGTGCAGCCTCTTTAGCAGAACTACCAGCNAGAAGCATT
GTT
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