FC869017

Overview
NameFC869017
Unique NameFC869017
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869017 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 8.159e-87
Identity = 160/233 (68.67%), Postives = 182/233 (78.11%), Query Frame = 1
Query:   64 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSHVGFFVQ 750
            +T A+   +FAG+ A++ S       G    G++TMR+T          S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFS  GFFVQ
Sbjct:    4 STMALSSPSFAGK-AVKLSPSSSEITG---NGKVTMRKTASKAKTVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 232          
BLAST of FC869017 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 8.159e-87
Identity = 156/204 (76.47%), Postives = 168/204 (82.35%), Query Frame = 1
Query:  145 VADGGRITMRRTVKSTPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSHVGFFVQ 750
            +    + TMR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLADDP+ FAELKVKELKNGRLAMFS  GFFVQ
Sbjct:   17 IQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQ 220          
BLAST of FC869017 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 1.066e-86
Identity = 155/203 (76.35%), Postives = 171/203 (84.24%), Query Frame = 1
Query:  157 GRITMRRTVKSTPQSI-----WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSHVGFFVQ 750
            GRITMR+T    P+++     WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG VEGYRI                +FDPLGLADDP+ FAELKVKE+KNGRLAMFS  GFFVQ
Sbjct:   31 GRITMRKTA-GKPKTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 232          
BLAST of FC869017 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 1.066e-86
Identity = 167/239 (69.87%), Postives = 185/239 (77.41%), Query Frame = 1
Query:   61 MATSAI-QQSAFAGQ--TALRQSNEFVRKVGVADG-GRITMRRTV--KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSHVGFFVQ 750
            MA+  I  + AFAG   ++++  N  +  VG A G  R+TMR+    KS   SI   WYGPDR  YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIHAQSILAIWACQV+LMG +EGYR+                 FDPLGLADDPD FAELKVKE+KNGRLAMFS  GFFVQ
Sbjct:    5 MASCGIGSRCAFAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGKKSVAASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQ 243          
BLAST of FC869017 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 1.066e-86
Identity = 164/233 (70.39%), Postives = 183/233 (78.54%), Query Frame = 1
Query:   64 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSHVGFFVQ 750
            AT A+   +FAG+ A++ S       G    G+ TMR+TV K+ P S    WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTA LSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+                +FDPLGLADDP+ FAELKVKE+KNGRLAMFS  GFFVQ
Sbjct:    4 ATMALSSPSFAGK-AVKFSPSSSEITG---NGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 232          
BLAST of FC869017 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 1.066e-86
Identity = 157/200 (78.50%), Postives = 169/200 (84.50%), Query Frame = 1
Query:  157 GRITMRRTVKS--TPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSHVGFFVQ 750
            GR++MR+TV    +  S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QV+LMG VEGYRI                +FDPLGLADDP+ FAELKVKELKNGRLAMFS  GFFVQ
Sbjct:   29 GRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQ 228          
BLAST of FC869017 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.392e-86
Identity = 162/233 (69.53%), Postives = 184/233 (78.97%), Query Frame = 1
Query:   64 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSHVGFFVQ 750
            A++    S FAG+ A++ S       G    G++TMR+T  K+ P S    WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFS  GFFVQ
Sbjct:    3 ASTTALSSPFAGK-AVKLSPSSSEVTG---NGKVTMRKTANKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 231          
BLAST of FC869017 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.392e-86
Identity = 162/233 (69.53%), Postives = 184/233 (78.97%), Query Frame = 1
Query:   64 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSHVGFFVQ 750
            A++    S FAG+ A++ S       G    G++TMR+T  K+ P S    WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFS  GFFVQ
Sbjct:    3 ASTTALSSPFAGK-AVKLSPSSSEVTG---NGKVTMRKTASKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 231          
BLAST of FC869017 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 1.818e-86
Identity = 162/233 (69.53%), Postives = 182/233 (78.11%), Query Frame = 1
Query:   64 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSHVGFFVQ 750
            +T A+   +FAG  A++ S       G    G+  MR+TV K+ P S    WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG +EGYR+                +FDPLGLADDP+ FAELKVKE+KNGRLAMFS  GFFVQ
Sbjct:    4 STMALSSPSFAGN-AVKLSPSSSEITG---NGKAIMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 232          
BLAST of FC869017 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 2.374e-86
Identity = 160/233 (68.67%), Postives = 185/233 (79.40%), Query Frame = 1
Query:   64 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTP---QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSHVGFFVQ 750
            +T A+  S+FAG+ A++ S       G    G++TMR+T  K+ P    S WYGP+R KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFK G+QIFS+GGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFS  GFFVQ
Sbjct:    4 STMALSSSSFAGK-AVKLSPSSSEITG---NGKVTMRKTASKAKPVSSSSPWYGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 232          
The following BLAST results are available for this feature:
BLAST of FC869017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CB24_TOBAC8.159e-8768.67Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB21_CUCSA8.159e-8776.47Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2A_SPIOL1.066e-8676.35Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2A_PINSY1.066e-8669.87Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB25_PETSP1.066e-8670.39Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB23_SOYBN1.066e-8678.50Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB25_NICPL1.392e-8669.53Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB21_TOBAC1.392e-8669.53Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB27_TOBAC1.818e-8669.53Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB23_NICPL2.374e-8668.67Chlorophyll a-b binding protein C, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionC31007F05EF AbioticL1 Citrus clementina cDNA clone C31007F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869017 ID=FC869017; Name=FC869017; organism=Citrus clementina; type=EST; length=751bp
ATATTCAGAGTGCGAAAAGAATCTTCAGCAACAAAAGGAAAAGCTTTCGC
ATAAGAACATATGGCAACCTCTGCTATCCAACAATCAGCATTTGCTGGCC
AGACCGCCTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGCT
GACGGTGGCCGTATCACCATGAGGAGGACTGTCAAATCCACTCCCCAGAG
CATCTGGTACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGAGC
AAACACCATCATACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGAT
ACCGCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCT
AGAGGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCT
TCCCTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTGG
TTCAAGGCTGGCGCTCAAATCTTCTCTGAAGGTGGCCTTGACTATCTTGG
CAACCCCAACCTCATTCATGCTCAGAGCATTTTGGCTATCTGGGCCTGCC
AGGTTGTGCTCATGGGTTTTGTTGAAGGATACAGAATTGGTGGCGGTCCT
CTTGGTGAAGGACTTGACCCACTTTACCCTGGTGGTGCTTTTGACCCACT
TGGTTTGGCCGATGACCCCGATCAATTTGCTGAGTTGAAGGTCAAGGAGC
TCAAGAATGGCCGTCTGGCTATGTTCTCCCATGTTGGATTCTTTGTTCAG
G
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