FC869017
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC869017 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 3.269e-19 Identity = 89/261 (34.10%), Postives = 121/261 (46.36%), Query Frame = 1 Query: 61 MATSAIQQSA---FAGQTALRQS---NEFVRKVGVADGGRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR-----------------IXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSHVGFFVQ 750 MAT A+ S+ FA + A+RQS VG + G + +TP G DRP + S+Q+ SYL G PGDYG+D GLS DPE F + R L EVI+ R+AMLGA+G + PE L K G+ E WF+ G I G +Y + ++ ++ LMGF E R + F+PLG D ELK+KE+KNGRLAM + +G+F+Q Sbjct: 1 MATQALVSSSSLTFAAE-AVRQSFRARSLPSSVGCSRKGLVR----AAATPPVKQGGVDRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQ 244
BLAST of FC869017 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.342e-17 Identity = 86/263 (32.70%), Postives = 121/263 (46.01%), Query Frame = 1 Query: 61 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK--------STPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR-----------------IXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSHVGFFVQ 750 MAT A+ S+ ++ S E R++ G RI+ T K STP + G +R + S+Q+ SYL G PGD+G+D GLS DPE F + + L EVI+ R+AMLGA G + PEIL K G+ E WF+ G I G +Y + ++ ++ LMGF E R + F+PLG D ELK+KE+KNGRLAM + +G+F+Q Sbjct: 1 MATQALISSS-----SISTSAEAARQI---IGSRISQSVTRKASFVVRAASTPP-VKQGANRQLWFA--SKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQ 242
BLAST of FC869017 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 9.842e-16 Identity = 47/83 (56.63%), Postives = 53/83 (63.86%), Query Frame = 1 Query: 511 LIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA---FDPLGLADDPDQFAELKVKELKNGRLAMFSHVGFFVQ 750 LIHA+S+LAI A QV+LMG VEGYR FDPLGLADDPD F ELKVKE+KNGRLAM +GF+ Q Sbjct: 5 LIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQ 87
BLAST of FC869017 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.856e-14 Identity = 59/167 (35.33%), Postives = 78/167 (46.71%), Query Frame = 1 Query: 253 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSHVGFFVQ 750 +P YLTG GD G+D GL+ DPE + E+++ RWAMLG G + PE+ +K G+ W+ AG Q F+ ++ L H I W + G V I F+PL A P Q E K KEL NGRLAM + +GF VQ Sbjct: 63 SPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-INVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFA--PTQ--EAKEKELANGRLAMLAFLGFVVQ 222
BLAST of FC869017 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.500e-13 Identity = 68/221 (30.77%), Postives = 92/221 (41.63%), Query Frame = 1 Query: 217 DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSHVGFFVQ 750 DRP + ++P YL G GDYG+D GL E AKN RE E+IH RWAML LG + E L+ GV W AG +G YLG P +++ I +V+++G++E R FDPLGLA DP + A+L++ E+K+ RLAM +GF VQ Sbjct: 51 DRPLWFP--GAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLT--GV-----TWQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVLVIGYIEFQR--NAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQ 256
BLAST of FC869017 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.971e-13 Identity = 51/167 (30.54%), Postives = 73/167 (43.71%), Query Frame = 1 Query: 250 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSHVGFFVQ 750 + P+ LTGE+P D G+D L+ADP+ +A+ R EV H R AML +GC+ PE+L G+ WF+AG + L + + + E +R FDPL L D + A E+KNGRLA+ + G Q Sbjct: 195 EPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSVDG------------------LKLGFITMAIAAPTEYWRGQGGFNWQKGELDRSYPGFDPLNLTTDYTRAA-----EVKNGRLALTAVAGLTAQ 331
BLAST of FC869017 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.798e-13 Identity = 70/222 (31.53%), Postives = 94/222 (42.34%), Query Frame = 1 Query: 217 DRPK-YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSHVGFFVQ 750 DRP Y G S P +L G GDYG+D GL E AKN RE E+IH RWAML LG + E L+ GV W AG +G YLG P +++ I +V+++G++E R FDPLGLA DP++ A+L++ E+K+ RLAM + +GF VQ Sbjct: 54 DRPLWYPGAIS---PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLT--GV-----TWQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVLVIGYIEFQR--NAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQ 259
BLAST of FC869017 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.601e-12 Identity = 63/233 (27.04%), Postives = 88/233 (37.77%), Query Frame = 1 Query: 142 GVADGGRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR---------------------IXXXXXXXXXXXXXXXXAFDPLGLA---------DDPDQFAELKVKELKNGRLAMFSHVGFFVQ 750 GV+ R + + P+ W P G + P +L G PGD+G+D GL DP RE E+IH RWAML LG G + WF+AGA +P + S + Q++LMG+VE R FDPL LA D D+ LK+ E+K+ RLAM + + F+ + Sbjct: 39 GVSTTSRKLVVVAAAAAPKKSWI----PAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFV-------GQAWTGIPWFEAGA------------DPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFE 248
BLAST of FC869017 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 8.622e-12 Identity = 57/195 (29.23%), Postives = 75/195 (38.46%), Query Frame = 1 Query: 256 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR---------------------IXXXXXXXXXXXXXXXXAFDPLGLA---------DDPDQFAELKVKELKNGRLAMFSHVGFFVQ 750 P +L G PGDYG+D GL DP RE E+IH RWAM LG G + WF+AGA +P I S + Q++LMG+VE R FDPL LA D ++ LKV E+K+ RLAM + + F+ + Sbjct: 68 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFE 243
BLAST of FC869017 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.279e-11 Identity = 49/136 (36.03%), Postives = 70/136 (51.47%), Query Frame = 1 Query: 343 RELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSHVGFFVQ 750 RE E+IH RWAMLG LG + E L+ G+ W AG EG YLG P +++ I +V+++G++E R FDPLGLA DP++ LK+ E+K+ RLAM + + F +Q Sbjct: 138 RECELIHGRWAMLGTLGAIAVEALT--GI-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVLVVGYIEFQR---NSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQ 259 The following BLAST results are available for this feature:
BLAST of FC869017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 81
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Sequences
The
following sequences are available for this feature:
EST sequence >FC869017 ID=FC869017; Name=FC869017; organism=Citrus clementina; type=EST; length=751bpback to top |