FC869020
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_HYPBU (Ribonuclease HII OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rnhB PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.345e-19 Identity = 67/187 (35.83%), Postives = 98/187 (52.41%), Query Frame = 1 Query: 97 MGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 654 +GIDEAGRGPV+GPMV G C + +A L DSK L R +L+ ++ + ++ + + P L A +NLN++ ++ + +R+ + VY+D VG EK A+LS R ++ + AD YP+VS ASIVAKV RD +R ++ GSGYP DPET Sbjct: 10 IGIDEAGRGPVIGPMVVVGVAVCSNDIDKLVA-LGVRDSKQLTPVVRAKLYGEI-LRVALHSVIVKLPPALLDA-------VNLNQLEVETFEYIASRIAGVHDSPEAVYVDAVGSPEKLAARLSGRL-GVRVIAEPGADKTYPIVSAASIVAKVVRDAEIR------MLRRLYGVRGSGYPTDPET 180
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_META3 (Ribonuclease HII OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rnhB PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.082e-18 Identity = 73/213 (34.27%), Postives = 100/213 (46.95%), Query Frame = 1 Query: 82 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNK--NKINLNEISHDSAIGLITRVL-------------NIGVLLTEVYLDTVGDAEKYQAK------LSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657 +N I+G+DEAGRGPVLGPMV + + L+ DSK + +REELFE + N V + + L AK ++K N INLN+I + LI VL E+Y+D EK A + +IK + KAD Y +VS ASI+AKV RDR + E + ++ GSGYP D T+ Sbjct: 18 NNKLIIGLDEAGRGPVLGPMVIALVKIKGQDLKNFEKLDIKDSKKHSKNRREELFEMIINNYDVRYEI-------LEAKTIDKLMNTINLNKIELMAFTKLINSVLKEEYPNYKENSKIQTATPQIEIYIDACSSNEKAFANQIKSKLIVNDENNIKIIAEHKADENYKIVSAASIIAKVIRDRKI------EEYKKIYGEIGSGYPSDKITQ 217
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_PYRAB (Ribonuclease HII OS=Pyrococcus abyssi GN=rnhB PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.846e-18 Identity = 64/191 (33.51%), Postives = 104/191 (54.45%), Query Frame = 1 Query: 94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVG-DAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657 + G DEAGRGPV+GP+V ++L L DSK L +RE+LF+++ KV D ++V I+ P+++ + K ++NE+ ++ + + ++ V +Y+D+ AE++ + R K V KAD+ Y +VS ASI+AKV RDR + E + + +FGSGYP DP T+ Sbjct: 3 VAGADEAGRGPVIGPLVIVAAVVEEDKIRSLTKLGVKDSKQLTPAQREKLFDEIVKVLDD--YSVVIVSPQDIDGR-----KGSMNELEVENFVKALN---SLKVKPEVIYIDSADVKAERFAENIRSRLAYEAKVVAEHKADAKYEIVSAASILAKVIRDREI------EKLKAEYGDFGSGYPSDPRTK 177
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_THESM (Ribonuclease HII OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rnhB PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.411e-18 Identity = 66/192 (34.38%), Postives = 102/192 (53.12%), Query Frame = 1 Query: 100 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDP---RELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGVLLTEVYLDTVG-DAEKYQAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657 GIDEAGRGPV+GP+V + S + L DSK L +KREELFE + ++++D ELS + ++K + +N+ ++ +VLN + + VY+D + E++ + ++ K + KADS Y V+ ASI+AKVTRD+ + E + ++ N GSGYP DP TR Sbjct: 5 GIDEAGRGPVVGPLVIAAVVIDESKIEKFEALGVKDSKKLSPKKREELFEKI---------IELVDDYFILELSPEDIDKREGTMNDFEVEN----FAKVLNSLKIKPDLVYIDAADVNEERFGIVVREKLSFYPKIIAEHKADSKYIPVAAASILAKVTRDKAI------ERLKEIYGNIGSGYPSDPITR 177
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_METMA (Ribonuclease HII OS=Methanosarcina mazei GN=rnhB PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.411e-18 Identity = 70/197 (35.53%), Postives = 101/197 (51.27%), Query Frame = 1 Query: 94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVG-DAEKYQAKLSQRF--------PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657 I GIDEAG+GPV+GPM G + S L L ADSK L +KRE+L +K + G+ + + P ++ + +++NEI + +VL + VY D AE++ L +++ IK V +AD++YPVVS ASI+AKV RD + EE +FGSGYP DP+TR Sbjct: 3 IAGIDEAGKGPVIGPMCIGGVKIDESKAHILKVLGVADSKKLTPKKREQLASQIK-KHADGYFIFEVSPSQIDEL---RKIMSMNEI----MVVCFAKVLE-QLKPDIVYADAADVKAERFAENLLRQYAKTSPDHAKKIKVVSMHQADAIYPVVSAASIIAKVRRDE-----LIEELKREWCIDFGSGYPSDPKTR 185
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_NANEQ (Ribonuclease HII OS=Nanoarchaeum equitans GN=rnhB PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.149e-18 Identity = 63/186 (33.87%), Postives = 96/186 (51.61%), Query Frame = 1 Query: 100 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657 G+DEAGRGP++GPMV + Y L L DSK L +E+REELF ++ N V + +I+ P + ++ NLNE+ LI +I ++ + +D+ E Y+ ++ + +++K P+V+ ASIVAKV RDR + E+ E +FGSGYP D TR Sbjct: 5 GVDEAGRGPIIGPMVIALVIGDSGY---LKELGVKDSKLLTKEQREELFNEIVKNSLVKY--EIVSPSLI-------DRYNLNELEAKVTANLIN---SIEDEISHIVIDSPERPENYKLRILKYLKKRVKIITKNKGEEDPLVAAASIVAKVIRDREI-----EKIKEQTGIDFGSGYPSDKRTR 170
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_METVS (Ribonuclease HII OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rnhB PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18 Identity = 62/190 (32.63%), Postives = 98/190 (51.58%), Query Frame = 1 Query: 94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELS--AKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657 I+G+DEAGRGPVLGPMV + + +L+ DSK L +++REE + +N+ ++ P ++ K N NKI L+ S S + N+ + + +++AKL + ++ + KAD Y +VS ASI+AKVTRD + E+ + + GSGYPGDP+T+ Sbjct: 25 ILGLDEAGRGPVLGPMVISVVKVTEKDLDKINSLDLKDSKQLTKKRREEYYN--IINECFEVQKIVLAPEKIDEYMKTSNLNKIELSAFSKLSN-HFLKEYENVKIFIDACSSSEQSFLNQFKAKLINK--KVEIIAEHKADEKYKIVSAASIIAKVTRDNII------ESYKEEFGDIGSGYPGDPKTK 203
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_THEPD (Ribonuclease HII OS=Thermofilum pendens (strain Hrk 5) GN=rnhB PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.371e-18 Identity = 67/194 (34.54%), Postives = 95/194 (48.97%), Query Frame = 1 Query: 94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVD--IIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVGDA-----EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPET 654 + GIDEAGRGP+LGPMV + CP L + DSK L +R L + SVG +V +++P+E+ + + NLN + LI VL+ G L VY+D+ E+ +A L + ++ V AD Y +V ASIVAK TRD + + + +FGSGYP DP T Sbjct: 4 VAGIDEAGRGPMLGPMVVAIVVCPEEKVPLLRNMGVRDSKALSPRRRLLLSRAI---PSVGCSVKVRVVEPQEIDCAVRGECYENLNHLEAAVFAQLINEVLSEGE-LEVVYMDSPDPVPSRFEERVRALLKGQ---VRIVAENGADEKYTIVGAASIVAKETRDEII------NALKKTYGDFGSGYPSDPRT 184
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_PYRFU (Ribonuclease HII OS=Pyrococcus furiosus GN=rnhB PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.162e-18 Identity = 61/190 (32.11%), Postives = 96/190 (50.53%), Query Frame = 1 Query: 94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVG-DAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657 I GIDEAGRGP +GP+V + + L + DSK L +R+ LF + + + + + I+ P E+ + N++ + + + L L I L +Y D DA ++ + + +R K + KAD+ YPVVS ASI+AKV RD + E + + +FGSGYP DP+T+ Sbjct: 3 IGGIDEAGRGPAIGPLVVATVVVDEKNIEKLRNIGVKDSKQLTPHERKNLFSQI-TSIADDYKIVIVSPEEIDNRSGTMNELEVEKFA------LALNSLQIKPAL--IYADAADVDANRFASLIERRLNYKAKIIAEHKADAKYPVVSAASILAKVVRDEEI------EKLKKQYGDFGSGYPSDPKTK 177
BLAST of FC869020 vs. ExPASy Swiss-Prot
Match: RNH2_METAC (Ribonuclease HII OS=Methanosarcina acetivorans GN=rnhB PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.197e-17 Identity = 68/197 (34.52%), Postives = 102/197 (51.78%), Query Frame = 1 Query: 94 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGVLLTEVYLDTVG-DAEKYQAKLSQRF--------PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETR 657 I GIDEAG+GPV+GPM G + S L L ADSK L +KRE+L +K + G+ + I P ++ + +++NEI + +VL + VY D AE++ L +++ I+ + +AD++YPVVS ASI+AKV RD + EE + +FGSGYP DP+T+ Sbjct: 3 IAGIDEAGKGPVIGPMCIGGVKIEESRAHILKVLGVADSKKLTPKKREQLASQIK-KHADGFFILEITPAQIDEL---RKIMSMNEI----MVICFAKVLE-QLKPDIVYADAADVKAERFAENLRRQYAKTNPAHAKKIEIISMHQADAIYPVVSAASIIAKVRRDE-----LIEEIKKEWSVDFGSGYPSDPKTK 185 The following BLAST results are available for this feature:
BLAST of FC869020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 51
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Sequences
The
following sequences are available for this feature:
EST sequence >FC869020 ID=FC869020; Name=FC869020; organism=Citrus clementina; type=EST; length=693bpback to top |