FC869021

Overview
NameFC869021
Unique NameFC869021
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3717 contig Ccv1_Contig3717:129..866. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869021 vs. ExPASy Swiss-Prot
Match: LLDD_VIBCM (L-lactate dehydrogenase [cytochrome] OS=Vibrio cholerae serotype O1 (strain M66-2) GN=lldD PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.056e-18
Identity = 53/161 (32.92%), Postives = 84/161 (52.17%), Query Frame = 1
Query:  148 EYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADI 630
            +Y A AK KLP  ++ Y   G+  + TL+ N +  + I  R R+L D+S++ + T + G  +++PI ++P     M    GE          G   TLS+ +   +EEV+ +     +FQLYV KDR     +++RA+ AG K +  TVD P  G R  D+
Sbjct:    8 DYRAAAKAKLPPFLFHYIDGGSYGEHTLRRNTDDLADIALRQRVLSDMSELSLETELFGEKMALPIALSPVGLTGMYARRGEVQAAQAAEAKGIPFTLSTVSVCPIEEVAPSIHRPIWFQLYVLKDRGFMKNVLERAKAAGVKNLVFTVDMPVPGARYRDM 168          
BLAST of FC869021 vs. ExPASy Swiss-Prot
Match: LLDD_VIBCH (L-lactate dehydrogenase [cytochrome] OS=Vibrio cholerae GN=lldD PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.056e-18
Identity = 53/161 (32.92%), Postives = 84/161 (52.17%), Query Frame = 1
Query:  148 EYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADI 630
            +Y A AK KLP  ++ Y   G+  + TL+ N +  + I  R R+L D+S++ + T + G  +++PI ++P     M    GE          G   TLS+ +   +EEV+ +     +FQLYV KDR     +++RA+ AG K +  TVD P  G R  D+
Sbjct:    8 DYRAAAKAKLPPFLFHYIDGGSYGEHTLRRNTDDLADIALRQRVLSDMSELSLETELFGEKMALPIALSPVGLTGMYARRGEVQAAQAAEAKGIPFTLSTVSVCPIEEVAPSIHRPIWFQLYVLKDRGFMKNVLERAKAAGVKNLVFTVDMPVPGARYRDM 168          
BLAST of FC869021 vs. ExPASy Swiss-Prot
Match: LLDD_ALCFA (L-lactate dehydrogenase [cytochrome] OS=Alcaligenes faecalis GN=lldD PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.056e-18
Identity = 54/181 (29.83%), Postives = 91/181 (50.28%), Query Frame = 1
Query:  133 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY 675
            I++  +Y   A+++LP  ++ Y   GA  + TL+ N +  + +  R R+L+D+S++D +  + G  +SMP+ ++P     M    GE          G   T+SS +   +EEV+       +FQLYV KDR      ++RA+ AG   +  TVD P  G R  D  +  +  P+  L+ Y
Sbjct:    3 ISSSTDYRRAAQKRLPPFLFHYIDGGAYAEHTLRRNVDDLAEVALRQRVLKDMSQLDTSIDLFGEKLSMPVALSPVGLTGMYARRGEVQAARAADARGIPFTMSSVSVCPIEEVAPRLSRPMWFQLYVLKDRGFMRNALERAQAAGCSTLVFTVDMPVPGARYRDAHSG-MSGPNAALRRY 182          
BLAST of FC869021 vs. ExPASy Swiss-Prot
Match: LLDD_XANCP (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. campestris GN=lldD PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.686e-18
Identity = 53/165 (32.12%), Postives = 83/165 (50.30%), Query Frame = 1
Query:  133 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 627
            I+   +Y A A+ +LP  ++ Y   GA  + TL+ N +  + I  R R+LR++S + ++T + G  ++MP+ +AP     M    GE          G   TLS+ +   +EEV+       +FQLYV KDR      ++RA+ AG   +  TVD P  G R  D
Sbjct:    3 ISAASDYRAAAEARLPPFLFHYIDGGAYAEHTLRRNVSDLADIALRQRVLRNMSDLSLSTELFGETLAMPVALAPVGLTGMYARRGEVQAARAAAARGIPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKTAGVTTLVFTVDMPTPGARYRD 167          
BLAST of FC869021 vs. ExPASy Swiss-Prot
Match: LLDD_XANCB (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. campestris (strain B100) GN=lldD PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.686e-18
Identity = 53/165 (32.12%), Postives = 83/165 (50.30%), Query Frame = 1
Query:  133 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 627
            I+   +Y A A+ +LP  ++ Y   GA  + TL+ N +  + I  R R+LR++S + ++T + G  ++MP+ +AP     M    GE          G   TLS+ +   +EEV+       +FQLYV KDR      ++RA+ AG   +  TVD P  G R  D
Sbjct:    3 ISAASDYRAAAEARLPPFLFHYMDGGAYAEHTLRRNVSDLADIALRQRVLRNMSDLSLSTELFGETLAMPVALAPVGLTGMYARRGEVQAARAAAARGIPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKAAGVTTLVFTVDMPTPGARYRD 167          
BLAST of FC869021 vs. ExPASy Swiss-Prot
Match: LLDD_XANC8 (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. campestris (strain 8004) GN=lldD PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.686e-18
Identity = 53/165 (32.12%), Postives = 83/165 (50.30%), Query Frame = 1
Query:  133 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 627
            I+   +Y A A+ +LP  ++ Y   GA  + TL+ N +  + I  R R+LR++S + ++T + G  ++MP+ +AP     M    GE          G   TLS+ +   +EEV+       +FQLYV KDR      ++RA+ AG   +  TVD P  G R  D
Sbjct:    3 ISAASDYRAAAEARLPPFLFHYIDGGAYAEHTLRRNVSDLADIALRQRVLRNMSDLSLSTELFGETLAMPVALAPVGLTGMYARRGEVQAARAAAARGIPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKTAGVTTLVFTVDMPTPGARYRD 167          
BLAST of FC869021 vs. ExPASy Swiss-Prot
Match: LLDD_SALCH (L-lactate dehydrogenase [cytochrome] OS=Salmonella choleraesuis GN=lldD PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.686e-18
Identity = 54/184 (29.35%), Postives = 89/184 (48.37%), Query Frame = 1
Query:  133 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGL 684
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S++  R R+L+++S + + TT+    + MP+ +AP     M    GE          G   TLS+ +   +EEV+ T     +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D  +    P    L+ ++ +
Sbjct:    3 ISAASDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLPMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIQRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMLRYWQAV 186          
BLAST of FC869021 vs. ExPASy Swiss-Prot
Match: LLDD_YERPY (L-lactate dehydrogenase [cytochrome] OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=lldD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.508e-18
Identity = 52/160 (32.50%), Postives = 80/160 (50.00%), Query Frame = 1
Query:  148 EYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 627
            +Y A A+ KLP  ++ Y   GA ++ TL+ N    + I  R R+L+++S++ + T + G   +MP+++ P     M    GE          G   TLS+ +   +EEV+       +FQLYV KDR      + RA+ AG K +  TVD P  G R  D
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYNEQTLRRNTADLADIALRQRVLKNMSELSLETQLFGETQAMPVVLGPVGLSGMYARRGEVQAARAADKKGIPFTLSTLSVCPIEEVAPAIARPMWFQLYVLKDRGFMRNALTRAQAAGVKTLVFTVDMPVPGARYRD 167          
BLAST of FC869021 vs. ExPASy Swiss-Prot
Match: LLDD_YERPS (L-lactate dehydrogenase [cytochrome] OS=Yersinia pseudotuberculosis GN=lldD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.508e-18
Identity = 52/160 (32.50%), Postives = 80/160 (50.00%), Query Frame = 1
Query:  148 EYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 627
            +Y A A+ KLP  ++ Y   GA ++ TL+ N    + I  R R+L+++S++ + T + G   +MP+++ P     M    GE          G   TLS+ +   +EEV+       +FQLYV KDR      + RA+ AG K +  TVD P  G R  D
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYNEQTLRRNTADLADIALRQRVLKNMSELSLETQLFGETQAMPVVLGPVGLSGMYARRGEVQAARAADKKGIPFTLSTLSVCPIEEVAPAIARPMWFQLYVLKDRGFMRNALTRAQAAGVKTLVFTVDMPVPGARYRD 167          
BLAST of FC869021 vs. ExPASy Swiss-Prot
Match: LLDD_YERPP (L-lactate dehydrogenase [cytochrome] OS=Yersinia pestis (strain Pestoides F) GN=lldD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.508e-18
Identity = 52/160 (32.50%), Postives = 80/160 (50.00%), Query Frame = 1
Query:  148 EYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 627
            +Y A A+ KLP  ++ Y   GA ++ TL+ N    + I  R R+L+++S++ + T + G   +MP+++ P     M    GE          G   TLS+ +   +EEV+       +FQLYV KDR      + RA+ AG K +  TVD P  G R  D
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYNEQTLRRNTADLADIALRQRVLKNMSELSLETQLFGETQAMPVVLGPVGLSGMYARRGEVQAARAADKKGIPFTLSTLSVCPIEEVAPAIARPMWFQLYVLKDRGFMRNALTRAQAAGVKTLVFTVDMPVPGARYRD 167          
The following BLAST results are available for this feature:
BLAST of FC869021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_VIBCM2.056e-1832.92L-lactate dehydrogenase [cytochrome] OS=Vibrio cho... [more]
LLDD_VIBCH2.056e-1832.92L-lactate dehydrogenase [cytochrome] OS=Vibrio cho... [more]
LLDD_ALCFA2.056e-1829.83L-lactate dehydrogenase [cytochrome] OS=Alcaligene... [more]
LLDD_XANCP2.686e-1832.12L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANCB2.686e-1832.12L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANC82.686e-1832.12L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_SALCH2.686e-1829.35L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_YERPY3.508e-1832.50L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPS3.508e-1832.50L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPP3.508e-1832.50L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31007F09EF AbioticL1 Citrus clementina cDNA clone C31007F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869021 ID=FC869021; Name=FC869021; organism=Citrus clementina; type=EST; length=738bp
GACTCTCTCTTCCTTCAGTCTTCATTTCCCAGTTTCTGACTTTATTGCTT
TGCGCTCCCTTCACTGATTCATTTCTGCTTCTTTTGTTGTTCAAGGAAGC
CAAGCGATAGCATTATGACTTATATATCGGAGATCACCAATGTTATGGAG
TATGAGGCTCTTGCAAAGGAGAAATTGCCGAAGATGGTTTATGACTACTA
TGCATCAGGTGCTGAGGACCAGTGGACTCTTCAGGAAAACCGTAATGCAT
TCTCTAGGATTCTATTTCGACCACGCATTCTTAGAGATGTAAGCAAGATT
GACATGACTACAACAGTCTTGGGCTTCAACATTTCCATGCCCATCATGAT
TGCTCCAACGGCATTTCAGAAAATGGCTCATCCTGAAGGGGAGTGTGCAA
CAGCAAGGGCAGCCTCAGCAGCTGGCACAATCATGACATTATCTTCATGG
GCCACTTCCAGTGTCGAGGAAGTTTCTTCAACGGGACCTGGAATTCGCTT
TTTCCAACTCTATGTGACCAAGGACAGGAATGTGGACGCACAGCTAGTAA
AAAGAGCTGAAAGGGCTGGTTTTAAGGCGATTGCCCTTACCGTCGATACT
CCAAGGCTTGGCCGTCGGGAAGCTGATATTAAGAACAGATTTGTTTTGCC
GCCACATCTGACTTTGAAGAACTATGAGGGCTTGTATATTGGCAAGATGG
ATAAGACTGATGACTCTGGATTAGCTTCGTATGTTGCC
back to top