FC869025

Overview
NameFC869025
Unique NameFC869025
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869025 vs. ExPASy Swiss-Prot
Match: TDH_RHISN (L-threonine 3-dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=tdh PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.913e-20
Identity = 64/181 (35.36%), Postives = 95/181 (52.49%), Query Frame = 1
Query:  199 LPSLGPYDVLVGMKAVGICGSDVHYLKTLRCVDFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRKCHVDVD 738
            +P +GP DVL+ +K   ICG+DVH     +     +  PMV+GHE  G I +VGS V     G+RV+ E  I C +C +C+ GR +LC   +      P  GS A  V  P      +PD+V  E  A+ +P    +H     ++  E +VL+ GAGPIG++  L A+  GA +    D++
Sbjct:   24 VPEVGPNDVLIRVKKSAICGTDVHIWNWDQWAQKTIPVPMVVGHEFMGEIAEVGSAVTKHHVGERVSGEGHIVCGKCRNCRAGRGHLCRNTLGVGVNRP--GSFAEFVCLPEYNVVTIPDDVPDEIAAIFDPFGNAVHTALSFDLVGE-DVLVTGAGPIGIMGALVAKRSGARKVVITDIN 201          
BLAST of FC869025 vs. ExPASy Swiss-Prot
Match: TDH_RHILW (L-threonine 3-dehydrogenase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=tdh PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.913e-20
Identity = 60/183 (32.79%), Postives = 97/183 (53.01%), Query Frame = 1
Query:  199 LPSLGPYDVLVGMKAVGICGSDVHYLKTLRCVDFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRKCHVDVDDY 744
            +P +GP DVL+ ++   ICG+DVH     +     +  PMV+GHE +G I ++GS V     G+RV+ E  I C +C +C+ GR +LC   +      P  GS    V  P      +P+++S E  A+ +P    +H     ++  E +VL+ GAGPIG++  L A+  GA +    D++ +
Sbjct:   24 VPEVGPNDVLIRVRKSAICGTDVHIWNWDQWAQKTIPVPMVVGHEFSGEIAEIGSAVTRYHVGERVSGEGHIVCGKCRNCRAGRGHLCRNTLGVGVNRP--GSFGEFVCIPESNVVAIPEDISDEIAAIFDPFGNAVHTALSFDLVGE-DVLVTGAGPIGIMGALVAKRSGARKVVITDINPH 203          
BLAST of FC869025 vs. ExPASy Swiss-Prot
Match: TDH_PARUW (L-threonine 3-dehydrogenase OS=Protochlamydia amoebophila (strain UWE25) GN=tdh PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.969e-20
Identity = 64/175 (36.57%), Postives = 89/175 (50.86%), Query Frame = 1
Query:  220 DVLVGMKAVGICGSDVHYLKTLRCVDFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRKCHVDVDDY 744
            +VL+      ICG+DVH  K        V  P+VIGHE  G I + G  VK    G+RV  E  I C +C +C+ GR ++C   K      + G  A   V PA+  F LP ++S + GA+ +P    +H     N+  E +VLI GAGPIG++    A+  GA      DV+DY
Sbjct:   28 EVLIKTIKTSICGTDVHIYKWDAWAQKNVPVPLVIGHEFIGEIAEFGKNVKGFKIGERVCGEGHIVCNQCPNCRMGRKHVCMHTKGLGY-HISGCFAEYFVLPAENVFSLPPSISDDLGAIFDPYGNAVHTTLAFNLIGE-DVLITGAGPIGIMAAAIAKQAGARHIVITDVNDY 200          
BLAST of FC869025 vs. ExPASy Swiss-Prot
Match: RSPB_ECOLI (Starvation-sensing protein rspB OS=Escherichia coli (strain K12) GN=rspB PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.969e-20
Identity = 63/171 (36.84%), Postives = 88/171 (51.46%), Query Frame = 1
Query:  172 NTLKIQPFELPSLGPYDVLVGMKAVGICGSDVHYLKTLRCVDFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVH--GSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGL 678
            N L I   E+P+    +V V +K  GICGSD H     R  +   K P VIGHE  GVI+ VG  V++   G+RVA++P +SC  C  C  G+ N+C  +   A   VH  G  +   V PA   +K+P+ V+ +   M EP ++  +            VL+ GAGPIGL
Sbjct:   10 NQLAIVEREIPTPSAGEVRVKVKLAGICGSDSHIY---RGHNPFAKYPRVIGHEFFGVIDAVGEGVESARVGERVAVDPVVSCGHCYPCSIGKPNVCTTL---AVLGVHADGGFSEYAVVPAKNAWKIPEAVADQYAVMIEPFTIAANVTGHGQPTENDTVLVYGAGPIGL 174          
BLAST of FC869025 vs. ExPASy Swiss-Prot
Match: TDH_PSYIN (L-threonine 3-dehydrogenase OS=Psychromonas ingrahamii (strain 37) GN=tdh PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.475e-20
Identity = 58/181 (32.04%), Postives = 92/181 (50.83%), Query Frame = 1
Query:  202 PSLGPYDVLVGMKAVGICGSDVHYLKTLRCVDFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRKCHVDVDDY 744
            P  G  D+L+ +    ICG+D+H           +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+ GR +LC            G+ A  +V PA   FK+P  +S +  ++ +P    +H+    ++  E +VLI GAGPIG++    A+  GA      D+++Y
Sbjct:   23 PEPGHNDLLIKIHKTAICGTDIHIYNWDEWSQNTIPVPMVVGHEYVGEVVGMGQEVRGFSVGDRVSGEGHITCGHCRNCRAGRTHLCRNTIGVGVNRT-GAFAEYLVIPAFNAFKIPAGISDDLASIFDPFGNAVHSALSFDVVGE-DVLITGAGPIGIMAAAVAKHAGARYVVITDINEY 201          
BLAST of FC869025 vs. ExPASy Swiss-Prot
Match: TDH_AGRRK (L-threonine 3-dehydrogenase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=tdh PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.475e-20
Identity = 59/181 (32.60%), Postives = 94/181 (51.93%), Query Frame = 1
Query:  199 LPSLGPYDVLVGMKAVGICGSDVHYLKTLRCVDFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRKCHVDVD 738
            +P +GP DVL+ ++   ICG+DVH     +     +  PMV+GHE  G I ++GS V     G+RV+ E  I C +C +C+ GR +LC   +      P  GS    V  P      +PD++  E  A+ +P    +H     ++  E +VL+ GAGPIG++  + A+  GA +    D++
Sbjct:   24 VPEVGPNDVLIRVRKSAICGTDVHIWNWDQWAQKTIPVPMVVGHEFCGEIAEIGSAVTKYHVGERVSGEGHIVCGKCRNCRAGRGHLCRNTLGVGVNRP--GSFGEFVCIPESNVVPIPDDIPDEVAAIFDPFGNAVHTALSFDLVGE-DVLVTGAGPIGIMGAMVAKRSGARKVVITDIN 201          
BLAST of FC869025 vs. ExPASy Swiss-Prot
Match: BDH1_YEAST ((R,R)-butanediol dehydrogenase OS=Saccharomyces cerevisiae GN=BDH1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.475e-20
Identity = 61/191 (31.94%), Postives = 93/191 (48.69%), Query Frame = 1
Query:  220 DVLVGMKAVGICGSDVHYLKTLRCVDFVVKE-----------PMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISC-----WR---------CDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPR 717
            +V++ +   GICGSD+H  + L    F+ K+           P+ +GHE +G++ KVG +V  +  GD V ++   SC     W          CD C+ G  NLC    F     + G  A QVV        +P  + L+  A+ EPLSV  HA + +     ++ L++GAGPIGL T+L  +  GA +
Sbjct:   28 EVIIDVSWCGICGSDLH--EYLDGPIFMPKDGECHKLSNAALPLAMGHEMSGIVSKVGPKVTKVKVGDHVVVDAASSCADLHCWPHSKFYNSKPCDACQRGSENLCTHAGFVGLGVISGGFAEQVVVSQHHIIPVPKEIPLDVAALVEPLSVTWHAVKISGFKKGSSALVLGAGPIGLCTILVLKGMGASK 216          
BLAST of FC869025 vs. ExPASy Swiss-Prot
Match: TDH_SOLUE (L-threonine 3-dehydrogenase OS=Solibacter usitatus (strain Ellin6076) GN=tdh PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.107e-19
Identity = 63/182 (34.62%), Postives = 90/182 (49.45%), Query Frame = 1
Query:  202 PSLGPYDVLVGMKAVGICGSDVHYLKTLRCVDFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRKCHVDVDDY 744
            P++G  DVL+ +   GICG+DVH  K        +  PM IGHE  G IE VGS V    PGD V+ E  + C RC +C  GR +LC + M      P  G+ A  +  P    ++  + + L+  A+ +P    +H      +  E +VLI GAGPIG++    AR   A      D++ Y
Sbjct:   21 PAIGINDVLIRVLRTGICGTDVHIYKWDEWARETIHVPMAIGHEFVGRIEAVGSNVADFFPGDIVSGEGHVVCGRCRNCFAGRRHLCAKTMGVGVNRP--GAFAEYIALPMTNIWRHHEGIDLDVAAIFDPFGNAVHTALSFPVLGE-DVLITGAGPIGIMAAAVARHAAARYTVITDLNPY 199          
BLAST of FC869025 vs. ExPASy Swiss-Prot
Match: BDHA_BACSU ((R,R)-butanediol dehydrogenase OS=Bacillus subtilis GN=bdhA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.107e-19
Identity = 63/188 (33.51%), Postives = 94/188 (50.00%), Query Frame = 1
Query:  178 LKIQPFELPSLGPYDVLVGMKAVGICGSDVHYLKTLRCVDFVVKE----------PMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGA 711
            ++I+  E P   P  V + +K  GICGSD+H  + L    F+  +          P+ +GHE +G + +VG  V+    GDRV +EP  +     H   G YNL  +M F       G  +  V    +L FKLPD +S E+GA+ EP +V L+A R + +       + G GPIGL+ +   +A GA
Sbjct:   12 IRIEHIEEPKTEPGKVKIKVKWCGICGSDLH--EYLGGPIFIPVDKPHPLTNETAPVTMGHEFSGEVVEVGEGVENYKVGDRVVVEPIFAT----HGHQGAYNLDEQMGFLGLAGGGGGFSEYVSVDEELLFKLPDELSYEQGALVEPSAVALYAVRSSKLKAGDKAAVFGCGPIGLLVIEALKAAGA 193          
BLAST of FC869025 vs. ExPASy Swiss-Prot
Match: TDH_MESSB (L-threonine 3-dehydrogenase OS=Mesorhizobium sp. (strain BNC1) GN=tdh PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.446e-19
Identity = 63/182 (34.62%), Postives = 91/182 (50.00%), Query Frame = 1
Query:  199 LPSLGPYDVLVGMKAVGICGSDVHYLKTLRCVDFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVH--GSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRKCHVDVD 738
            LP +GP DVL+ ++   ICG+DVH           V  P+V GHE  G +  VGS V     G RV+ E  I C  C +C+ GR +LC          VH  G+ A  +  P      +PD+V  E  A+ +PL   +H     ++  E +VL+ GAGPIG++  L A+  GA +    D++
Sbjct:   24 LPEIGPNDVLIKVRKAAICGTDVHIWNWDEWARKTVPVPLVTGHEFVGEVVDVGSAVTEYRIGQRVSGEGHIVCGHCRNCRAGRGHLCRNTLGVG---VHRPGAFAEYISLPQHNVVAIPDDVPDEIAAIFDPLGNAVHTALSFDLVGE-DVLVTGAGPIGIMGALVAQCVGARKVVITDIN 201          
The following BLAST results are available for this feature:
BLAST of FC869025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
TDH_RHISN2.913e-2035.36L-threonine 3-dehydrogenase OS=Rhizobium sp. (stra... [more]
TDH_RHILW2.913e-2032.79L-threonine 3-dehydrogenase OS=Rhizobium leguminos... [more]
TDH_PARUW4.969e-2036.57L-threonine 3-dehydrogenase OS=Protochlamydia amoe... [more]
RSPB_ECOLI4.969e-2036.84Starvation-sensing protein rspB OS=Escherichia col... [more]
TDH_PSYIN8.475e-2032.04L-threonine 3-dehydrogenase OS=Psychromonas ingrah... [more]
TDH_AGRRK8.475e-2032.60L-threonine 3-dehydrogenase OS=Agrobacterium radio... [more]
BDH1_YEAST8.475e-2031.94(R,R)-butanediol dehydrogenase OS=Saccharomyces ce... [more]
TDH_SOLUE1.107e-1934.62L-threonine 3-dehydrogenase OS=Solibacter usitatus... [more]
BDHA_BACSU1.107e-1933.51(R,R)-butanediol dehydrogenase OS=Bacillus subtili... [more]
TDH_MESSB1.446e-1934.62L-threonine 3-dehydrogenase OS=Mesorhizobium sp. (... [more]

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Properties
Property NameValue
Genbank descriptionC31007G01EF AbioticL1 Citrus clementina cDNA clone C31007G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869025 ID=FC869025; Name=FC869025; organism=Citrus clementina; type=EST; length=744bp
GAAACAGAATCAGAATAAATGTCAGCTTAAAATGTTGTGTACAGAGTGAA
GTCTCTTCTGTGCACTTGTGTTTTTGAAGGGTAAAAAGCAAATATGGGCA
AAGGAGGGATGTCACAAGGAGAAAAGAAGGATGGAGAAGAAGTTAACATG
GCAGCTTGGCTTATGGGTGTCAACACCCTCAAGATTCAACCTTTTGAGCT
TCCTTCTCTGGGACCATATGATGTTTTAGTCGGGATGAAAGCCGTTGGTA
TTTGTGGAAGTGATGTGCATTATCTCAAGACCTTGAGGTGTGTCGATTTT
GTTGTGAAAGAGCCTATGGTGATTGGGCACGAGTGTGCTGGGGTCATAGA
GAAGGTGGGAAGCGAGGTGAAGACTTTGGTGCCCGGTGACCGTGTGGCCC
TGGAACCCGGGATCAGCTGCTGGCGATGCGATCACTGCAAAGGAGGTCGA
TACAATTTGTGTCCAGAGATGAAATTTTTTGCAACTCCGCCCGTTCATGG
TTCCCTGGCTAATCAGGTGGTGCATCCTGCAGACCTATGTTTTAAGCTGC
CGGACAATGTGAGCCTGGAGGAAGGGGCTATGTGTGAGCCCTTGAGTGTT
GGTCTTCATGCCTGCCGCCGTGCCAATATCGGTCCTGAGACAAATGTGCT
TATCATGGGAGCAGGGCCCATAGGACTTGTCACAATGCTAGGAGCTCGTG
CTTTTGGAGCTCCTAGAAAATGTCATGTGGATGTGGATGACTAT
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