FC869025

Overview
NameFC869025
Unique NameFC869025
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869025 vs. ExPASy Swiss-Prot
Match: TDH_DEIDV (L-threonine 3-dehydrogenase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=tdh PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.640e-26
Identity = 69/184 (37.50%), Postives = 101/184 (54.89%), Query Frame = 1
Query:  196 ELPSLGPYDVLVGMKAVGICGSDVHYLKTLRCVDFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRKCHVDVDDY 744
            E+P  GP D+L+ +K   ICG+DVH  K        +  PMV+GHE  GV+  +GSEV+    GDRV+ E  ++C  C +C+ GR +LC   +      P  GS A  +V PA   FKLPD++  +  A+ +P    +H     ++  E +VL+ GAGPIG++    AR  GA      D++DY
Sbjct:   19 EVPRPGPNDLLIRVKKGSICGTDVHIYKWDEWAQKTIPVPMVVGHEYVGVVAAMGSEVRGFNVGDRVSGEGHVTCGHCRNCRAGRRHLCRNTLGVGVNRP--GSFAEYLVLPAFNAFKLPDDIPDDVAAIFDPFGNAVHTALSFDLVGE-DVLVTGAGPIGVMAAAVARHVGARNVVITDINDY 199          
BLAST of FC869025 vs. ExPASy Swiss-Prot
Match: TDH_DEIRA (L-threonine 3-dehydrogenase OS=Deinococcus radiodurans GN=tdh PE=3 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 6.060e-26
Identity = 70/183 (38.25%), Postives = 100/183 (54.64%), Query Frame = 1
Query:  196 ELPSLGPYDVLVGMKAVGICGSDVHYLKTLRCVDFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRKCHVDVDDY 744
            E+P+ GP D+L+ ++   ICG+DVH  K        V  PMV+GHE  GV+  +GSEV+    GDRV+ E  ++C  C +C+ GR +LC   +        GS A  +V PA   FKLPD++  +  A+ +P    +H     ++  E +VLI GAGPIG +    AR  GA      DV+DY
Sbjct:   19 EVPTPGPNDLLIRIRKGSICGTDVHIYKWDDWASQTVPVPMVVGHEYVGVVAGMGSEVRGFEIGDRVSGEGHVTCGHCRNCRAGRRHLCRNTQGVGVNR-PGSFAEYLVLPAFNAFKLPDDIPDDVAAIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGCMAAAVARHVGARNVVITDVNDY 199          
BLAST of FC869025 vs. ExPASy Swiss-Prot
Match: TDH_COLP3 (L-threonine 3-dehydrogenase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=tdh PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.034e-25
Identity = 68/183 (37.16%), Postives = 97/183 (53.01%), Query Frame = 1
Query:  196 ELPSLGPYDVLVGMKAVGICGSDVHYLKTLRCVDFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRKCHVDVDDY 744
            E P LG  D+L+ +K   ICG+D+H           V  PMV+GHE AG +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            GS A  +V PA   FKLPD +S +  ++ +P    +H     ++  E +VLI GAGPIG++    A+  GA      D+++Y
Sbjct:   19 EKPKLGHNDLLIKIKKTAICGTDIHIYNWDEWAQKTVPTPMVVGHEYAGEVVGIGQEVKGFTLGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNRA-GSFAEYLVIPAYNAFKLPDEISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVAKHVGARHVVITDINEY 199          
BLAST of FC869025 vs. ExPASy Swiss-Prot
Match: TDH_ANADF (L-threonine 3-dehydrogenase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=tdh PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.007e-25
Identity = 66/183 (36.07%), Postives = 100/183 (54.64%), Query Frame = 1
Query:  199 LPSLGPYDVLVGMKAVGICGSDVHYLKTLRCVDFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRKCHVDVDDY 744
            +P +G +DV + ++   ICG+DVH           +  PM++GHE  GV++ VG EV+   PGDRV+ E  ++C  C +C+ GR +LC   +      P  GS A  VV PAD  +++PD++  E  A+ +P     H      +  E +VL+ GAGPIG++ +  AR  GA      DV+DY
Sbjct:   21 VPEVGVHDVRIRVRKSAICGTDVHIYNWDEWSQRTIPVPMIVGHEYVGVVDAVGGEVEAFHPGDRVSGEGHVTCGFCRNCRAGRRHLCRHTIGVGVNRP--GSFAEYVVIPADNVYRIPDDIPDEVAAIFDPYGNATHTALSFELVGE-DVLVTGAGPIGVMAVSIARHVGARHVVVTDVNDY 200          
BLAST of FC869025 vs. ExPASy Swiss-Prot
Match: TDH_ANASK (L-threonine 3-dehydrogenase OS=Anaeromyxobacter sp. (strain K) GN=tdh PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.928e-25
Identity = 66/182 (36.26%), Postives = 99/182 (54.40%), Query Frame = 1
Query:  199 LPSLGPYDVLVGMKAVGICGSDVHYLKTLRCVDFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRKCHVDVDDY 744
            +P +G +DV++ +    ICG+DVH           V  PMV+GHE  G +EKVG+EV+   PG+RV+ E  ++C  C +C+ GR +LC            GS A  VV PAD  +++PD++  +  A+ +P     H     ++  E +VL+ GAGPIG++    AR  GA      DV+DY
Sbjct:   21 VPEVGVHDVMIKVTKSAICGTDVHIYNWDEWSQKTVPVPMVVGHEYVGRVEKVGAEVEAFRPGERVSGEGHVTCGFCRNCRAGRRHLCRHTVGVGVNR-PGSFAEYVVIPADNVYRIPDDIPDDIAAIFDPFGNATHTALSFDLVGE-DVLVTGAGPIGVMAAAIARHVGARHVVVTDVNDY 200          
BLAST of FC869025 vs. ExPASy Swiss-Prot
Match: TDH_ANAD2 (L-threonine 3-dehydrogenase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=tdh PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.928e-25
Identity = 66/182 (36.26%), Postives = 99/182 (54.40%), Query Frame = 1
Query:  199 LPSLGPYDVLVGMKAVGICGSDVHYLKTLRCVDFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRKCHVDVDDY 744
            +P +G +DV++ +    ICG+DVH           V  PMV+GHE  G +EKVG+EV+   PG+RV+ E  ++C  C +C+ GR +LC            GS A  VV PAD  +++PD++  +  A+ +P     H     ++  E +VL+ GAGPIG++    AR  GA      DV+DY
Sbjct:   21 VPEVGVHDVMIRVTKSAICGTDVHIYNWDEWSQKTVPVPMVVGHEYVGRVEKVGAEVEAFRPGERVSGEGHVTCGFCRNCRAGRRHLCRHTVGVGVNR-PGSFAEYVVIPADNVYRIPDDIPDDIAAIFDPFGNATHTALSFDLVGE-DVLVTGAGPIGVMAAAIARHVGARHVVVTDVNDY 200          
BLAST of FC869025 vs. ExPASy Swiss-Prot
Match: TDH_ANADE (L-threonine 3-dehydrogenase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=tdh PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.750e-25
Identity = 65/182 (35.71%), Postives = 99/182 (54.40%), Query Frame = 1
Query:  199 LPSLGPYDVLVGMKAVGICGSDVHYLKTLRCVDFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRKCHVDVDDY 744
            +P +G +DV++ +    ICG+DVH           V  PMV+GHE  G +E+VG+EV+   PG+RV+ E  ++C  C +C+ GR +LC            GS A  VV PAD  +++PD++  +  A+ +P     H     ++  E +VL+ GAGPIG++    AR  GA      DV+DY
Sbjct:   21 VPEVGVHDVMIRVTKSAICGTDVHIYNWDEWSQKTVPVPMVVGHEYVGRVERVGAEVEAFRPGERVSGEGHVTCGFCRNCRAGRRHLCRHTVGVGVNR-PGSFAEYVVIPADNVYRIPDDIPDDIAAIFDPFGNATHTALSFDLVGE-DVLVTGAGPIGVMAAAIARHVGARHVVVTDVNDY 200          
BLAST of FC869025 vs. ExPASy Swiss-Prot
Match: TDH_SERP5 (L-threonine 3-dehydrogenase OS=Serratia proteamaculans (strain 568) GN=tdh PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.143e-24
Identity = 64/181 (35.36%), Postives = 95/181 (52.49%), Query Frame = 1
Query:  202 PSLGPYDVLVGMKAVGICGSDVHYLKTLRCVDFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRKCHVDVDDY 744
            P LG  D+++ ++   ICG+DVH           +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            GS A  +V PA   FK+PDN+S E  ++ +P    +H     ++  E +VL+ GAGPIG++     +  GA      DV++Y
Sbjct:   21 PELGHNDIMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFTVGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNR-PGSFAEYLVIPAFNAFKIPDNISDELASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVCKHVGARHVVITDVNEY 199          
BLAST of FC869025 vs. ExPASy Swiss-Prot
Match: TDH_YERPY (L-threonine 3-dehydrogenase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=tdh PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.949e-24
Identity = 65/181 (35.91%), Postives = 95/181 (52.49%), Query Frame = 1
Query:  202 PSLGPYDVLVGMKAVGICGSDVHYLKTLRCVDFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRKCHVDVDDY 744
            P LG  D+++ ++   ICG+DVH           +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            GS A  +V PA   FK+PDN+S E  A+ +P    +H     ++  E +VL+ GAGPIG++     +  GA      DV++Y
Sbjct:   21 PELGHNDIMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNR-PGSFAEYLVIPAFNAFKIPDNISDELAAIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVCKHVGARHVVITDVNEY 199          
BLAST of FC869025 vs. ExPASy Swiss-Prot
Match: TDH_YERPS (L-threonine 3-dehydrogenase OS=Yersinia pseudotuberculosis GN=tdh PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.949e-24
Identity = 65/181 (35.91%), Postives = 95/181 (52.49%), Query Frame = 1
Query:  202 PSLGPYDVLVGMKAVGICGSDVHYLKTLRCVDFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRKCHVDVDDY 744
            P LG  D+++ ++   ICG+DVH           +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            GS A  +V PA   FK+PDN+S E  A+ +P    +H     ++  E +VL+ GAGPIG++     +  GA      DV++Y
Sbjct:   21 PELGHNDIMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNR-PGSFAEYLVIPAFNAFKIPDNISDELAAIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVCKHVGARHVVITDVNEY 199          
The following BLAST results are available for this feature:
BLAST of FC869025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
TDH_DEIDV4.640e-2637.50L-threonine 3-dehydrogenase OS=Deinococcus deserti... [more]
TDH_DEIRA6.060e-2638.25L-threonine 3-dehydrogenase OS=Deinococcus radiodu... [more]
TDH_COLP31.034e-2537.16L-threonine 3-dehydrogenase OS=Colwellia psychrery... [more]
TDH_ANADF3.007e-2536.07L-threonine 3-dehydrogenase OS=Anaeromyxobacter sp... [more]
TDH_ANASK3.928e-2536.26L-threonine 3-dehydrogenase OS=Anaeromyxobacter sp... [more]
TDH_ANAD23.928e-2536.26L-threonine 3-dehydrogenase OS=Anaeromyxobacter de... [more]
TDH_ANADE8.750e-2535.71L-threonine 3-dehydrogenase OS=Anaeromyxobacter de... [more]
TDH_SERP51.143e-2435.36L-threonine 3-dehydrogenase OS=Serratia proteamacu... [more]
TDH_YERPY1.949e-2435.91L-threonine 3-dehydrogenase OS=Yersinia pseudotube... [more]
TDH_YERPS1.949e-2435.91L-threonine 3-dehydrogenase OS=Yersinia pseudotube... [more]

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Properties
Property NameValue
Genbank descriptionC31007G01EF AbioticL1 Citrus clementina cDNA clone C31007G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869025 ID=FC869025; Name=FC869025; organism=Citrus clementina; type=EST; length=744bp
GAAACAGAATCAGAATAAATGTCAGCTTAAAATGTTGTGTACAGAGTGAA
GTCTCTTCTGTGCACTTGTGTTTTTGAAGGGTAAAAAGCAAATATGGGCA
AAGGAGGGATGTCACAAGGAGAAAAGAAGGATGGAGAAGAAGTTAACATG
GCAGCTTGGCTTATGGGTGTCAACACCCTCAAGATTCAACCTTTTGAGCT
TCCTTCTCTGGGACCATATGATGTTTTAGTCGGGATGAAAGCCGTTGGTA
TTTGTGGAAGTGATGTGCATTATCTCAAGACCTTGAGGTGTGTCGATTTT
GTTGTGAAAGAGCCTATGGTGATTGGGCACGAGTGTGCTGGGGTCATAGA
GAAGGTGGGAAGCGAGGTGAAGACTTTGGTGCCCGGTGACCGTGTGGCCC
TGGAACCCGGGATCAGCTGCTGGCGATGCGATCACTGCAAAGGAGGTCGA
TACAATTTGTGTCCAGAGATGAAATTTTTTGCAACTCCGCCCGTTCATGG
TTCCCTGGCTAATCAGGTGGTGCATCCTGCAGACCTATGTTTTAAGCTGC
CGGACAATGTGAGCCTGGAGGAAGGGGCTATGTGTGAGCCCTTGAGTGTT
GGTCTTCATGCCTGCCGCCGTGCCAATATCGGTCCTGAGACAAATGTGCT
TATCATGGGAGCAGGGCCCATAGGACTTGTCACAATGCTAGGAGCTCGTG
CTTTTGGAGCTCCTAGAAAATGTCATGTGGATGTGGATGACTAT
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