FC869025

Overview
NameFC869025
Unique NameFC869025
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869025 vs. ExPASy Swiss-Prot
Match: TDH_VIBPA (L-threonine 3-dehydrogenase OS=Vibrio parahaemolyticus GN=tdh PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.155e-23
Identity = 63/181 (34.81%), Postives = 95/181 (52.49%), Query Frame = 1
Query:  202 PSLGPYDVLVGMKAVGICGSDVHYLKTLRCVDFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRKCHVDVDDY 744
            P +G  D+L+ +K   ICG+DVH           +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+GGR +LC            G+ A  +V PA   FK+PD +S +  ++ +P    +H     ++  E +VLI GAGPIG++    A+  GA      DV++Y
Sbjct:   23 PEVGHNDILIKIKKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVRGFEIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNR-EGAFAEYLVIPAFNAFKIPDEISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVAKHVGARHVVITDVNEY 201          
BLAST of FC869025 vs. ExPASy Swiss-Prot
Match: TDH_THET2 (L-threonine 3-dehydrogenase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=tdh PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.155e-23
Identity = 63/171 (36.84%), Postives = 90/171 (52.63%), Query Frame = 1
Query:  199 LPSLGPYDVLVGMKAVGICGSDVHYLKTLRCVDFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGA 711
            +P  GP ++LV ++A  ICG+D+H  K        ++ P+V GHE +GV+E VG  VK    GD V+LE  + C  C  C+ G Y++C   K        G  A  VV PA+  +  P ++  E  A+ EP    +H     +     +VLI GAGPIGL+  + ARA GA
Sbjct:   20 VPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVKRPQVGDHVSLESHVVCHACPACRTGNYHVCLNTKILGVDR-DGGFAEYVVVPAENAWVNPKDLPFEVAAILEPFGNAVHTVYAGSGVSGKSVLITGAGPIGLMAAMVARASGA 189          
BLAST of FC869025 vs. ExPASy Swiss-Prot
Match: TDH_CITK8 (L-threonine 3-dehydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=tdh PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.155e-23
Identity = 64/183 (34.97%), Postives = 98/183 (53.55%), Query Frame = 1
Query:  199 LPSLGPYDVLVGMKAVGICGSDVHYLKTLRCVDFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRKCHVDVDDY 744
            +P +G  D+L+ ++   ICG+DVH           +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC   +      P  G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VL+ GAGPIG++    A+  GA      DV++Y
Sbjct:   20 VPEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFRIGDRVSGEGHITCGHCRNCRGGRTHLCRNTLGVGVNRP--GCFAEYLVLPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARHVVITDVNEY 199          
BLAST of FC869025 vs. ExPASy Swiss-Prot
Match: Y053_HAEIN (Uncharacterized zinc-type alcohol dehydrogenase-like protein HI0053 OS=Haemophilus influenzae GN=HI0053 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.815e-23
Identity = 60/181 (33.15%), Postives = 98/181 (54.14%), Query Frame = 1
Query:  172 NTLKIQPFELPSLGPYDVLVGMKAVGICGSDVHYLKTLRCVDFVVKEPMVIGHECAGVIEKVGSEVKTLVP-GDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGA 711
            N + ++    P     DVL+ ++++GICGSD+      R  + +V  P ++GHE  G + + G  +   V  GDRV ++P + C +C  C  GR N C  +K      + G +   + HPA L  K+PDN+ + +  + EPL++ LHA  R  +    +++I+GAG IGL+  L A  +GA
Sbjct:   14 NNVVVKEVPYPEKSDNDVLIQVESMGICGSDIG---AYRGTNPLVTYPRILGHEIVGRVIESGIGMSDGVRVGDRVIVDPYVCCGQCYPCSIGRTNCCESLKVIGVH-IDGGMQEVIRHPAHLLTKVPDNLPIHQLPLAEPLTIALHALHRTTLKSGEHIVIIGAGAIGLMAALAAVQYGA 190          
BLAST of FC869025 vs. ExPASy Swiss-Prot
Match: TDH_VIBCM (L-threonine 3-dehydrogenase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=tdh PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.815e-23
Identity = 63/183 (34.43%), Postives = 96/183 (52.46%), Query Frame = 1
Query:  196 ELPSLGPYDVLVGMKAVGICGSDVHYLKTLRCVDFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRKCHVDVDDY 744
            ++P LG  D+L+ +K   ICG+DVH           +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+GGR +LC            G  +  +V PA   FK+PD +S +  ++ +P    +H     ++  E +VLI GAGPIG++    A+  GA      DV++Y
Sbjct:   21 DMPELGHNDLLIKIKKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVRGFQIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRT-GCFSEYLVIPAFNAFKIPDGISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVAKHVGARHVVITDVNEY 201          
BLAST of FC869025 vs. ExPASy Swiss-Prot
Match: TDH_VIBCH (L-threonine 3-dehydrogenase OS=Vibrio cholerae GN=tdh PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.815e-23
Identity = 63/183 (34.43%), Postives = 96/183 (52.46%), Query Frame = 1
Query:  196 ELPSLGPYDVLVGMKAVGICGSDVHYLKTLRCVDFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRKCHVDVDDY 744
            ++P LG  D+L+ +K   ICG+DVH           +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+GGR +LC            G  +  +V PA   FK+PD +S +  ++ +P    +H     ++  E +VLI GAGPIG++    A+  GA      DV++Y
Sbjct:   21 DMPELGHNDLLIKIKKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVRGFQIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRT-GCFSEYLVIPAFNAFKIPDGISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVAKHVGARHVVITDVNEY 201          
BLAST of FC869025 vs. ExPASy Swiss-Prot
Match: TDH_VIBC3 (L-threonine 3-dehydrogenase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=tdh PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.815e-23
Identity = 63/183 (34.43%), Postives = 96/183 (52.46%), Query Frame = 1
Query:  196 ELPSLGPYDVLVGMKAVGICGSDVHYLKTLRCVDFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRKCHVDVDDY 744
            ++P LG  D+L+ +K   ICG+DVH           +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+GGR +LC            G  +  +V PA   FK+PD +S +  ++ +P    +H     ++  E +VLI GAGPIG++    A+  GA      DV++Y
Sbjct:   21 DMPELGHNDLLIKIKKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVRGFQIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRT-GCFSEYLVIPAFNAFKIPDGISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVAKHVGARHVVITDVNEY 201          
BLAST of FC869025 vs. ExPASy Swiss-Prot
Match: TDH_SALTI (L-threonine 3-dehydrogenase OS=Salmonella typhi GN=tdh PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.815e-23
Identity = 63/181 (34.81%), Postives = 95/181 (52.49%), Query Frame = 1
Query:  202 PSLGPYDVLVGMKAVGICGSDVHYLKTLRCVDFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRKCHVDVDDY 744
            P +G  D+L+ ++   ICG+DVH           +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VL+ GAGPIG++    A+  GA      DV++Y
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGVMAAAVAKHVGARHVVITDVNEY 199          
BLAST of FC869025 vs. ExPASy Swiss-Prot
Match: TDH_IDILO (L-threonine 3-dehydrogenase OS=Idiomarina loihiensis GN=tdh PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.815e-23
Identity = 66/183 (36.07%), Postives = 96/183 (52.46%), Query Frame = 1
Query:  196 ELPSLGPYDVLVGMKAVGICGSDVHYLKTLRCVDFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRKCHVDVDDY 744
            E P  G  D+L+ +K   ICG+DVH  K        +  PMV+GHE  G +  +G  V+    GDRV+ E  I+C  C +C+ GR +LC    +       G+ A  +  PA+  FKLPD+V+ E  A+ +P    +H     ++  E +VLI GAGPIG++    AR  GA      DV++Y
Sbjct:   19 EKPECGYNDLLIKIKKTAICGTDVHIYKWDDWSQKTIPVPMVVGHEYVGEVAAMGDGVRGFEIGDRVSGEGHITCGHCRNCRAGRRHLC-RNTYGVGVNRPGAFAEYLALPAENAFKLPDDVTDEMAAVFDPFGNAVHTALAFDLVGE-DVLITGAGPIGIMAAAVARHVGARHVVITDVNEY 199          
BLAST of FC869025 vs. ExPASy Swiss-Prot
Match: TDH_ENTS8 (L-threonine 3-dehydrogenase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=tdh PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.815e-23
Identity = 63/181 (34.81%), Postives = 95/181 (52.49%), Query Frame = 1
Query:  202 PSLGPYDVLVGMKAVGICGSDVHYLKTLRCVDFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRKCHVDVDDY 744
            P +G  D+L+ ++   ICG+DVH           +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VL+ GAGPIG++    A+  GA      DV++Y
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEY 199          
The following BLAST results are available for this feature:
BLAST of FC869025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
TDH_VIBPA2.155e-2334.81L-threonine 3-dehydrogenase OS=Vibrio parahaemolyt... [more]
TDH_THET22.155e-2336.84L-threonine 3-dehydrogenase OS=Thermus thermophilu... [more]
TDH_CITK82.155e-2334.97L-threonine 3-dehydrogenase OS=Citrobacter koseri ... [more]
Y053_HAEIN2.815e-2333.15Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
TDH_VIBCM2.815e-2334.43L-threonine 3-dehydrogenase OS=Vibrio cholerae ser... [more]
TDH_VIBCH2.815e-2334.43L-threonine 3-dehydrogenase OS=Vibrio cholerae GN=... [more]
TDH_VIBC32.815e-2334.43L-threonine 3-dehydrogenase OS=Vibrio cholerae ser... [more]
TDH_SALTI2.815e-2334.81L-threonine 3-dehydrogenase OS=Salmonella typhi GN... [more]
TDH_IDILO2.815e-2336.07L-threonine 3-dehydrogenase OS=Idiomarina loihiens... [more]
TDH_ENTS82.815e-2334.81L-threonine 3-dehydrogenase OS=Enterobacter sakaza... [more]

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Properties
Property NameValue
Genbank descriptionC31007G01EF AbioticL1 Citrus clementina cDNA clone C31007G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869025 ID=FC869025; Name=FC869025; organism=Citrus clementina; type=EST; length=744bp
GAAACAGAATCAGAATAAATGTCAGCTTAAAATGTTGTGTACAGAGTGAA
GTCTCTTCTGTGCACTTGTGTTTTTGAAGGGTAAAAAGCAAATATGGGCA
AAGGAGGGATGTCACAAGGAGAAAAGAAGGATGGAGAAGAAGTTAACATG
GCAGCTTGGCTTATGGGTGTCAACACCCTCAAGATTCAACCTTTTGAGCT
TCCTTCTCTGGGACCATATGATGTTTTAGTCGGGATGAAAGCCGTTGGTA
TTTGTGGAAGTGATGTGCATTATCTCAAGACCTTGAGGTGTGTCGATTTT
GTTGTGAAAGAGCCTATGGTGATTGGGCACGAGTGTGCTGGGGTCATAGA
GAAGGTGGGAAGCGAGGTGAAGACTTTGGTGCCCGGTGACCGTGTGGCCC
TGGAACCCGGGATCAGCTGCTGGCGATGCGATCACTGCAAAGGAGGTCGA
TACAATTTGTGTCCAGAGATGAAATTTTTTGCAACTCCGCCCGTTCATGG
TTCCCTGGCTAATCAGGTGGTGCATCCTGCAGACCTATGTTTTAAGCTGC
CGGACAATGTGAGCCTGGAGGAAGGGGCTATGTGTGAGCCCTTGAGTGTT
GGTCTTCATGCCTGCCGCCGTGCCAATATCGGTCCTGAGACAAATGTGCT
TATCATGGGAGCAGGGCCCATAGGACTTGTCACAATGCTAGGAGCTCGTG
CTTTTGGAGCTCCTAGAAAATGTCATGTGGATGTGGATGACTAT
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