FC869034

Overview
NameFC869034
Unique NameFC869034
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13179 contig Ccv1_Contig13179:97..811. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869034 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUA2 (Aquaporin Z OS=Brucella abortus (strain 2308) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.424e-11
Identity = 45/119 (37.82%), Postives = 62/119 (52.10%), Query Frame = 3
Query:  276 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCG--FVKAFQKSYYNRYG---GGANELA-DGYNKGTGLGAEIIGTFVLVYTVFSAT 614
            G+G LG+A AFG  +  + Y   GISGGH NPAV+ GL +  ++     + Y VAQ LGAI      +V A  K  ++  G    G  EL+  GY+   GL  EII T   +  +  +T
Sbjct:   33 GIGFLGVALAFGLTVLTMAYAVGGISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGST 151          

HSP 2 Score: 20.4014 bits (41), Expect = 2.424e-11
Identity = 7/21 (33.33%), Postives = 12/21 (57.14%), Query Frame = 2
Query:  647 SGLGTTPIGVAVFMVHLATIP 709
            +G     IG  + ++HL +IP
Sbjct:  157 AGFAPIAIGFGLTLIHLVSIP 177          
BLAST of FC869034 vs. ExPASy Swiss-Prot
Match: AQPZ_CHRVO (Aquaporin Z OS=Chromobacterium violaceum GN=aqpZ PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 4.085e-11
Identity = 43/132 (32.58%), Postives = 61/132 (46.21%), Query Frame = 3
Query:  276 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAIC-----------GCGF--VKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSA 632
            G+G  G+A AFG  +  + Y    ISG H+NPAV+ GL+ G +    +   Y+VAQ LGAI            G GF   K F  + Y  +  G      GY+    L  E++ T   +  +  ATD +  A
Sbjct:   32 GIGFAGVALAFGLTVVTMAYAIGHISGCHLNPAVSIGLWAGGRFPAGQLAPYIVAQVLGAIAAGAVLYVIASGGAGFDVAKGFASNGYAEHSPG------GYSLLAALVCEVVMTMFFLLVIMGATDKRAPA 157          

HSP 2 Score: 23.8682 bits (50), Expect = 4.085e-11
Identity = 11/26 (42.31%), Postives = 17/26 (65.38%), Query Frame = 2
Query:  632 KRLPCSGLGTTPIGVAVFMVHLATIP 709
            KR P +G     IG+A+ ++HL +IP
Sbjct:  153 KRAP-AGFAPLAIGLALTLIHLISIP 177          
BLAST of FC869034 vs. ExPASy Swiss-Prot
Match: AQPZ1_AGRT5 (Aquaporin Z 1 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=aqpZ1 PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 8.916e-11
Identity = 42/119 (35.29%), Postives = 60/119 (50.42%), Query Frame = 3
Query:  276 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCG--FVKAFQKSYYNRYGGGANELAD----GYNKGTGLGAEIIGTFVLVYTVFSAT 614
            G+G LG+A+AFG  +  + Y   GISGGH NPAV+ GL +  K      + Y+VAQ LGA+      +V    K+     G  AN   +    GY+  + L  EII T   +  +  +T
Sbjct:   33 GIGFLGVAFAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAGKFPAANLVPYIVAQVLGAVVAAAALYVILTGKAGAEIGGFAANGYGEHSPGGYSLLSALLIEIILTAFFLVVILGST 151          

HSP 2 Score: 22.3274 bits (46), Expect = 8.916e-11
Identity = 8/20 (40.00%), Postives = 13/20 (65.00%), Query Frame = 2
Query:  650 GLGTTPIGVAVFMVHLATIP 709
            G     IG+A+ ++HL +IP
Sbjct:  158 GFAPVAIGLALTLIHLISIP 177          
The following BLAST results are available for this feature:
BLAST of FC869034 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
AQPZ_BRUA22.424e-1137.82Aquaporin Z OS=Brucella abortus (strain 2308) GN=a... [more]
AQPZ_CHRVO4.085e-1132.58Aquaporin Z OS=Chromobacterium violaceum GN=aqpZ P... [more]
AQPZ1_AGRT58.916e-1135.29Aquaporin Z 1 OS=Agrobacterium tumefaciens (strain... [more]

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Properties
Property NameValue
Genbank descriptionC31007G10EF AbioticL1 Citrus clementina cDNA clone C31007G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869034 ID=FC869034; Name=FC869034; organism=Citrus clementina; type=EST; length=714bp
AGAGTTTAATTACAAAACATCCTAAAAGGGAAAAAATGGGGAAGGATGTT
GAAGTTGCTGAGCAGCAAGGCGGCGGCGACGAGTTCTCAGCCAAGGACTA
CCACGACCCCCCTCCGGCGCCGCTGATCGATTTCGAGGAGCTGGGCAAGT
GGTCTTTTTACAGAGCTGTAATTGCTGAGTTCATCGCTACGCTTTTGTTT
CTTTATGTTACCGTCTTGACTGTGATTGGATACAAGAGCCAGACTGATCC
CAACTTGAATACCGATCAGTGTGGTGGCGTTGGCATTCTTGGCATCGCTT
GGGCCTTTGGTGGCATGATCTTCATTCTCGTTTACTGCACAGCCGGTATT
TCTGGTGGACATATCAACCCGGCTGTGACATTCGGACTGTTCTTGGGGCG
CAAGGTGTCGCTCATCCGAGCTCTTTTGTACATGGTAGCACAGTGCTTGG
GTGCAATCTGTGGTTGTGGGTTTGTGAAGGCTTTCCAAAAATCATACTAC
AACAGGTATGGAGGTGGGGCCAATGAGCTAGCTGATGGATACAACAAGGG
CACCGGACTGGGTGCTGAGATCATCGGTACTTTCGTTCTTGTCTACACTG
TTTTCTCTGCCACTGATCCTAAGAGGAGCGCAAGAGACTCCCATGTTCCG
GTCTTGGCACCACTCCCATTGGGGTTGCTGTGTTCATGGTTCACTTGGCC
ACCATCCCATCACG
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