FC869036

Overview
NameFC869036
Unique NameFC869036
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC869036 vs. ExPASy Swiss-Prot
Match: GLH1_CAEEL (ATP-dependent RNA helicase glh-1 OS=Caenorhabditis elegans GN=glh-1 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.475e-11
Identity = 41/130 (31.54%), Postives = 57/130 (43.85%), Query Frame = 1 
Query:  352 QSNLCKNCKRPGHFARECP------NVAICHNCGLPGHIASECTTKALCWNCREPGHMAG-----NCPNEGI----------------CHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCTN 660
            ++N C NC++PGH + +CP         +C+NC  PGH + ECT +      R  G   G     N  N+G                 C  C   GHR+ +C  PP      R C NC +QGH + +C N
Sbjct:  156 RNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPP------RGCFNCGEQGHRSNECPN 279
The following BLAST results are available for this feature:
BLAST of FC869036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
GLH1_CAEEL3.475e-1131.54ATP-dependent RNA helicase glh-1 OS=Caenorhabditis... [more]

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Properties
Property NameValue
Genbank descriptionC31007G12EF AbioticL1 Citrus clementina cDNA clone C31007G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869036 ID=FC869036; Name=FC869036; organism=Citrus clementina; type=EST; length=669bp
GGAGGCTGCTCGTCATCTTTTCCTTCTCCAGGAGTTGAAAATCGTAACAG
TCGCAATTCCGTCCGTACATAAAAGTAATTTCTTTAGCTAAAACAGTTCT
CGTCGACAACAATTTTCGCTGACTCGCCGAGCAAGACTCATCAGGGAGGC
AGCAGCTATTCTGGTGTTTGGTGGTGAAGTTTTTGCAGATCGGTGGTGGT
AGGTGTTAATAGGTGTTAGTTGAACATGAGTTCTGTCAGCAGGAGCCGAA
GCAGGAGCAGGAGCAGGAGCCCGCTGGATCGTAAGATCCGCTCTGATCGC
TTCTCCTACCGTGATGCACCATACAGGAGAGGGTCTCGTCGGGGTTACAG
CCAAAGTAATCTTTGCAAGAATTGCAAACGGCCAGGTCATTTTGCTAGAG
AGTGCCCTAATGTGGCAATTTGTCACAATTGTGGTCTTCCAGGCCACATT
GCTTCAGAATGCACTACAAAGGCATTATGTTGGAATTGCCGGGAACCAGG
GCACATGGCTGGCAACTGTCCAAATGAGGGCATCTGCCACACCTGTGGCA
AAGCTGGACATCGTGCAAGAGACTGCACTGCTCCCCCACTGCCACCTGGG
GACTTGAGATTGTGCAACAACTGCTATAAGCAGGGTCATTTTGCAGCTGA
TTGTACAAATGACAAGGCT
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