FC869039

Overview
NameFC869039
Unique NameFC869039
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9450 contig Ccv1_Contig9450:1..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869039 vs. ExPASy Swiss-Prot
Match: CYSK_BUCAI (Cysteine synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=cysK PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.620e-31
Identity = 76/149 (51.01%), Postives = 101/149 (67.79%), Query Frame = 1
Query:  274 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSXKGMKGAVQKAEEILNSTPNAY-MLQQFDNPA 717
            I +D +  IG TP+V LN I  G   NI  K+E   P  SVK RIG +MI  AE+   I      L+E TSGNTGI LA++AAS+ Y+L LTMP +MS+ER+ +LK+ GAEL+LTD   GMKGA+ KA +I++  P+ Y +L+QF+NPA
Sbjct:    4 IYQDNSLTIGNTPLVRLNRIGNG---NILVKIESRNPSFSVKCRIGANMIWHAEKNNNINKNVK-LIEATSGNTGIALAYVAASRNYRLTLTMPETMSIERKKILKSLGAELILTDGRYGMKGAISKANDIISRNPSKYFLLKQFENPA 148          
BLAST of FC869039 vs. ExPASy Swiss-Prot
Match: CYSM_CAMJE (Cysteine synthase B OS=Campylobacter jejuni GN=cysM PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.437e-29
Identity = 74/148 (50.00%), Postives = 93/148 (62.84%), Query Frame = 1
Query:  268 LNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSXKGMKGAVQKAEEILNSTPNAYMLQQFDN 711
            + + E V++LIG TP+++L    K    N+ AK E + P  S+KDR  F MI DA     I    +I VE TSGNTGI LA I A  G K I  MP SMSLERR ++  FGA L LT +  GMKGAV KA EIL +TPN++M+ QF+N
Sbjct:    1 MKVHEKVSELIGNTPIIHL----KKFGINVFAKCEFLNPSHSIKDRAAFEMIKDALDSKKINQDTTI-VEATSGNTGISLAMICADLGLKFIAVMPESMSLERRKMITLFGARLELTPANLGMKGAVDKANEILLNTPNSFMVSQFEN 143          
BLAST of FC869039 vs. ExPASy Swiss-Prot
Match: CYSM_ECOLI (Cysteine synthase B OS=Escherichia coli (strain K12) GN=cysM PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.383e-26
Identity = 68/141 (48.23%), Postives = 89/141 (63.12%), Query Frame = 1
Query:  292 QLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSXKGMKGAVQKAEEILNSTPNAYMLQQFDNP 714
            Q IG TP+V L  +     + +  KLE   P  SVKDR   SMI +AE++G I PG  +L+E TSGNTGI LA IAA KGY++ L MP +MS ERR  ++A+GAEL+L    +GM+GA   A E+ N      +L QF+NP
Sbjct:    6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMAN-RGEGKLLDQFNNP 144          
BLAST of FC869039 vs. ExPASy Swiss-Prot
Match: CBS_YEAST (Cystathionine beta-synthase OS=Saccharomyces cerevisiae GN=CYS4 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.642e-26
Identity = 68/151 (45.03%), Postives = 92/151 (60.93%), Query Frame = 1
Query:  283 DVTQLIGKTPMVYLNTIVK--GCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT------DSXKGMKGAVQKAEEILNSTPNAYMLQQFDN 711
            +V  L+G TP++ L  + K  G    I AKLE+  P  S+KDRI  SM+ +AE  G I P +S L+EPTSGNTGIGLA I A KGY+ I+T+P  MS E+  +LKA GAE++ T      DS +   G  +K E+     P A +L Q++N
Sbjct:   13 NVIDLVGNTPLIALKKLPKALGIKPQIYAKLELYNPGGSIKDRIAKSMVEEAEASGRIHPSRSTLIEPTSGNTGIGLALIGAIKGYRTIITLPEKMSNEKVSVLKALGAEIIRTPTAAAWDSPESHIGVAKKLEK---EIPGAVILDQYNN 160          
BLAST of FC869039 vs. ExPASy Swiss-Prot
Match: CBS_DICDI (Cystathionine beta-synthase OS=Dictyostelium discoideum GN=cysB PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.645e-25
Identity = 64/151 (42.38%), Postives = 93/151 (61.59%), Query Frame = 1
Query:  274 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSXKGM---KGAVQKAEEILNSTPNAYMLQQFDNPA 717
            I +++   IG TP+V +N +       + AK E      SVKDRIG  MI DAE+ G I  G + L+EPTSGNTGIGLA  AA KGYK+I+T+P  MS E+  +LKA GAE++ T +       +  +  A+++ +  PN+++L Q+ NP+
Sbjct:   32 IMDNILDNIGGTPLVRVNKVSSDLECELVAKCEFFNAGGSVKDRIGHRMIVDAEESGRIKKGDT-LIEPTSGNTGIGLALTAAIKGYKMIITLPEKMSQEKVDVLKALGAEIIRTPTEAAFDAPESHIGVAKKLNSEIPNSHILDQYGNPS 181          
BLAST of FC869039 vs. ExPASy Swiss-Prot
Match: CYSM_SALTY (Cysteine synthase B OS=Salmonella typhimurium GN=cysM PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.664e-25
Identity = 67/141 (47.52%), Postives = 88/141 (62.41%), Query Frame = 1
Query:  292 QLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSXKGMKGAVQKAEEILNSTPNAYMLQQFDNP 714
            Q IG TP+V L  +     + I  KLE   P  SVKDR   SMI +AE++G I PG  +L+E TSGNTGI LA IAA KGY++ L MP +MS ERR  ++A+GAEL+L    +GM+GA   A   ++      +L QF+NP
Sbjct:    6 QTIGNTPLVKLQRLGPDNGSEIWVKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLA-LAMSERGEGKLLDQFNNP 144          
BLAST of FC869039 vs. ExPASy Swiss-Prot
Match: CBS_RAT (Cystathionine beta-synthase OS=Rattus norvegicus GN=Cbs PE=1 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 1.066e-24
Identity = 68/151 (45.03%), Postives = 90/151 (59.60%), Query Frame = 1
Query:  274 IAEDVTQLIGKTPMVYLNTIVK--GCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDS---XKGMKGAVQKAEEILNSTPNAYMLQQFDN 711
            I  D+ + IG TPMV +N I K  G    + AK E      SVKDRI   MI DAE+ G + PG +I +EPTSGNTGIGLA  AA KGY+ I+ MP  MS+E+  +L+A GAE+V T +       +  V  A  + N  PN+++L Q+ N
Sbjct:   73 ILPDILRKIGNTPMVRINRISKNAGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGTLKPGDTI-IEPTSGNTGIGLALAAAVKGYRCIIVMPEKMSMEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRN 222          
BLAST of FC869039 vs. ExPASy Swiss-Prot
Match: CBS_RABIT (Cystathionine beta-synthase OS=Oryctolagus cuniculus GN=CBS PE=2 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.392e-24
Identity = 70/154 (45.45%), Postives = 91/154 (59.09%), Query Frame = 1
Query:  274 IAEDVTQLIGKTPMVYLNTIVK--GCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLT------DSXKGMKGAVQKAEEILNSTPNAYMLQQFDN 711
            I  D+ Q IG TPMV +N I K  G    + AK E      SVKDRI   MI DAE+ G + PG +I +EPTSGNTGIGLA  AA KGY+ I+ MP  MSLE+  +L+A GAE+V T      DS +   G   + ++     PN+++L Q+ N
Sbjct:   76 ILPDILQKIGDTPMVRINKIGKNFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGTLRPGDTI-IEPTSGNTGIGLALAAAVKGYRCIIVMPEKMSLEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKQ---EIPNSHILDQYRN 225          
BLAST of FC869039 vs. ExPASy Swiss-Prot
Match: CBS_MOUSE (Cystathionine beta-synthase OS=Mus musculus GN=Cbs PE=2 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 1.818e-24
Identity = 68/151 (45.03%), Postives = 90/151 (59.60%), Query Frame = 1
Query:  274 IAEDVTQLIGKTPMVYLNTIVK--GCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDS---XKGMKGAVQKAEEILNSTPNAYMLQQFDN 711
            I  D+ + IG TPMV +N I K  G    + AK E      SVKDRI   MI DAE+ G + PG +I +EPTSGNTGIGLA  AA KGY+ I+ MP  MS+E+  +L+A GAE+V T +       +  V  A  + N  PN+++L Q+ N
Sbjct:   73 ILPDILRKIGNTPMVRINKISKNAGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGNLKPGDTI-IEPTSGNTGIGLALAAAVKGYRCIIVMPEKMSMEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRN 222          
BLAST of FC869039 vs. ExPASy Swiss-Prot
Match: CYSM_AQUAE (Cysteine synthase OS=Aquifex aeolicus GN=cysM PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.051e-24
Identity = 67/154 (43.51%), Postives = 94/154 (61.04%), Query Frame = 1
Query:  280 EDVTQLIGKTPMVYLNTIVKGCV-------ANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSXKGMKGAVQKAEEILNSTPNAYM-LQQFDNPA 717
            E + +L+G TP+V     VK C+         I AKLE   P  SVKDR   SM  DA ++GLI  GK ++++ TSGNTGI LA + A+ G  + L MPA++S ER+ ++KAFGA+L LTD  +G  GA+    E++   P  Y+ L Q++NPA
Sbjct:   23 ETILKLVGNTPLVR----VKKCLPEDIPEDVEIWAKLESFNPGGSVKDRPALSMFLDALKRGLIKEGK-VVIDATSGNTGIALAMVGAALGVPVELAMPANVSEERKKIIKAFGAKLYLTDPLEGTDGAILFVRELVQKYPEKYVYLDQYNNPA 171          
The following BLAST results are available for this feature:
BLAST of FC869039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CYSK_BUCAI2.620e-3151.01Cysteine synthase OS=Buchnera aphidicola subsp. Ac... [more]
CYSM_CAMJE1.437e-2950.00Cysteine synthase B OS=Campylobacter jejuni GN=cys... [more]
CYSM_ECOLI7.383e-2648.23Cysteine synthase B OS=Escherichia coli (strain K1... [more]
CBS_YEAST9.642e-2645.03Cystathionine beta-synthase OS=Saccharomyces cerev... [more]
CBS_DICDI1.645e-2542.38Cystathionine beta-synthase OS=Dictyostelium disco... [more]
CYSM_SALTY3.664e-2547.52Cysteine synthase B OS=Salmonella typhimurium GN=c... [more]
CBS_RAT1.066e-2445.03Cystathionine beta-synthase OS=Rattus norvegicus G... [more]
CBS_RABIT1.392e-2445.45Cystathionine beta-synthase OS=Oryctolagus cunicul... [more]
CBS_MOUSE1.818e-2445.03Cystathionine beta-synthase OS=Mus musculus GN=Cbs... [more]
CYSM_AQUAE4.051e-2443.51Cysteine synthase OS=Aquifex aeolicus GN=cysM PE=3... [more]

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Properties
Property NameValue
Genbank descriptionC31007H03EF AbioticL1 Citrus clementina cDNA clone C31007H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869039 ID=FC869039; Name=FC869039; organism=Citrus clementina; type=EST; length=718bp
GGTAGCATCATCAGTTGGTCGTCAGACAGTTAGTCCCACAAAGTTCCAAA
AACAATGGCCACTTCGTCTTCTCTGGTGTGCAGTCCGTTGACTGCTCCTC
TCTGCATCTCCAAGAAATCATCATTGGCCACTCTGAAACTGGGCTACATT
AGCCCCATAACAGCAGCTCGAAGATTGAAGCAGAATTTGTACAAGGTCTC
TTACAAACCCTGCAACTCTGTTGTGTGCAAGGCTGTCTCTGTGAAGCCGC
AGACTGGGATTGAAGGTCTCAACATTGCTGAAGATGTCACTCAGCTTATT
GGGAAGACGCCAATGGTATACCTGAATACTATTGTCAAGGGGTGTGTTGC
AAACATTGCTGCCAAGCTTGAAATCATGGAACCATGTTGTAGTGTTAAGG
ACAGGATTGGTTTCAGTATGATAGCTGATGCCGAGCAAAAAGGACTAATA
ACGCCTGGAAAGAGTATTCTTGTAGAGCCCACTAGTGGAAACACTGGAAT
TGGCCTTGCTTTCATAGCTGCTTCGAAAGGATATAAGCTCATTTTGACTA
TGCCAGCCTCAATGAGCTTGGAAAGGAGAGTTCTTCTGAAAGCATTTGGA
GCTGAGCTTGTATTAACTGATTCAGNCAAAGGCATGAAGGGGGCTGTGCA
GAAAGCTGAAGAAATTTTGAATAGCACACCTAATGCATATATGCTTCAGC
AATTTGACAATCCTGCTA
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