FC869044

Overview
NameFC869044
Unique NameFC869044
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8975 contig Ccv1_Contig8975:9..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869044 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 63/162 (38.89%), Postives = 84/162 (51.85%), Query Frame = 1
Query:  205 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDP 651
            G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++ +++ LMGF E  R       G +G     G +K Y GG+ DP
Sbjct:   49 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR----VGGGPLGE----GLDKVYPGGAFDP 194          
BLAST of FC869044 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 63/162 (38.89%), Postives = 84/162 (51.85%), Query Frame = 1
Query:  205 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDP 651
            G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++ +++ LMGF E  R       G +G     G +K Y GG+ DP
Sbjct:   49 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR----VGGGPLGE----GLDKVYPGGAFDP 194          
BLAST of FC869044 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 62/166 (37.35%), Postives = 80/166 (48.19%), Query Frame = 1
Query:  205 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGG 666
            GADRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G I PE+L K G+  Q     WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPGG
Sbjct:   50 GADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCIFPELLSKNGV--QFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGP----------------LGEGLDPLYPGG 191          
BLAST of FC869044 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 63/162 (38.89%), Postives = 83/162 (51.23%), Query Frame = 1
Query:  205 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDP 651
            G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMGF E  R       G +G     G +K Y GG+ DP
Sbjct:   51 GEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE---TFARNREL---EVIHCRWAMLGALGCVFPEILSKNGVTFGEA--VWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYR----VGGGPLGE----GLDKIYPGGAFDP 196          
BLAST of FC869044 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 63/162 (38.89%), Postives = 83/162 (51.23%), Query Frame = 1
Query:  205 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDP 651
            G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMGF E  R       G +G     G +K Y GG+ DP
Sbjct:   23 GEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE---TFARNREL---EVIHCRWAMLGALGCVFPEILSKNGVTFGEA--VWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYR----VGGGPLGE----GLDKIYPGGAFDP 168          
BLAST of FC869044 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 66/202 (32.67%), Postives = 95/202 (47.03%), Query Frame = 1
Query:   97 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGG 666
            E +R++LG   A+     +     V ++A +  +  GADRP +    S ++ SYL+G   GDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PE+L K+G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPGG
Sbjct:   23 ELSRKVLGNVEARVTMRRT-----VSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPET---FARNREL---EVIHARWAMLGALGCLTPELLAKSGVKFGEA--VWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP----------------LGEVTDPIYPGG 195          
BLAST of FC869044 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 63/162 (38.89%), Postives = 83/162 (51.23%), Query Frame = 1
Query:  205 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDP 651
            G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMGF E  R       G +G     G +K Y GG+ DP
Sbjct:   51 GEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE---TFARNREL---EVIHCRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYR----VGGGPLGE----GLDKIYPGGAFDP 196          
BLAST of FC869044 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 65/177 (36.72%), Postives = 84/177 (47.46%), Query Frame = 1
Query:  172 VRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGG 666
            V++A T  +  G DRP +    S Q  SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMGF E  R                     LG   DP YPGG
Sbjct:   41 VKSAPTS-IWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGP----------------LGEGLDPIYPGG 192          
BLAST of FC869044 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 60/166 (36.14%), Postives = 78/166 (46.99%), Query Frame = 1
Query:  205 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGG 666
            G+DRPL+    S    SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPGG
Sbjct:   51 GSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVTPELLAKNGVKFGEA--VWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGP----------------LGEVEDPIYPGG 192          
BLAST of FC869044 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 62/162 (38.27%), Postives = 82/162 (50.62%), Query Frame = 1
Query:  205 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDP 651
            G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G +G     G +K Y GG+ DP
Sbjct:   51 GEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE---TFARNREL---EVIHCRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYR----VGGGPLGE----GLDKIYPGGAFDP 196          
The following BLAST results are available for this feature:
BLAST of FC869044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
CB23_ORYSJ1.849e-1338.89Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI1.849e-1338.89Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_LEMGI5.379e-1337.35Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB26_PETSP7.025e-1338.89Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB25_SOLLC9.175e-1338.89Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB2_PHYPA1.198e-1232.67Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_SOLLC1.198e-1238.89Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB21_GOSHI3.486e-1236.72Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB23_POLMU5.947e-1236.14Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB23_TOBAC1.325e-1138.27Chlorophyll a-b binding protein 36, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC31007H08EF AbioticL1 Citrus clementina cDNA clone C31007H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869044 ID=FC869044; Name=FC869044; organism=Citrus clementina; type=EST; length=705bp
GAATTTATCGTATTGAAGTATCGAAACAAGAGGAAAAAAGAAAATTAAAA
AATGGCAACCCAAGCTTTGGTTTCATCATCTCTTACATCTTCAGTGGAGA
CTGCGAGACAAATTCTTGGAGCAAGATCAGCTCAATCCCCAACTGGGTCA
TCAAGAAAAGGTTCCTTTGTTGTTAGGGCAGCTTCTACTCCTCCTGTTAA
GCAAGGAGCAGACAGACCGTTGTGGTTTGCATCCAAACAAAGCCTTTCAT
ACTTGGATGGCAGCCTCCCCGGAGACTATGGATTCGACCCACTTGGTCTC
TCAGACCCTGAAGGCACAGGAGGGTTCATTGAGCCAAAATGGCTGGCCTA
CGGCGAGGTCATCAACGGTCGTTATGCCATGTTGGGAGCTGTGGGAGCCA
TTGCACCGGAGATTCTTGGCAAGGCAGGCCTCATTCCGCAAGAAACTGCC
CTGGCCTGGTTCCAAACCGGTGTGATCCCCCCAGCGGGAACATACAACTA
CTGGGCAGACCCTTACACACTTTTCGTCCTGGAAATGGCACTCATGGGAT
TTGCCGAGCACCGGAGATTCCAAGACTGGGCAAATCCAGGATCAATGGGC
AGGCAATACTTCCTCGGATTCGAGAAATACTTGGGAGGATCCGGCGATCC
GGCTTACCCTGGAGGACCTCTATTCACCCTCTGGGTCTTGGAAAGATGAG
AGTCA
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