FC869053

Overview
NameFC869053
Unique NameFC869053
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12734 contig Ccv1_Contig12734:1..625. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869053 vs. ExPASy Swiss-Prot
Match: QOR_PIG (Quinone oxidoreductase OS=Sus scrofa GN=CRYZ PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.653e-18
Identity = 61/174 (35.06%), Postives = 92/174 (52.87%), Query Frame = 1
Query:  118 MKAIVITQPGSPEVLQLQ-EVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPHLGLECSGTILSVGKNVSRWKVGDQVCALLG-GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 633
            M AI + + G PEV++LQ +V  P  KD++VLIKV A  +N  DT  R G++          GL+ +G + +VG++VS +K GD+V  +    GGYAE        V  +P  +  K  AA      T    +  ++ +  GE  L+HG S G+G  A Q+ +  G++V  TAG
Sbjct:    8 MSAIRVFKFGGPEVMKLQSDVAIPIPKDNQVLIKVHACGVNPVDTYIRSGTHNMKPLLPYTPGLDVAGIVEAVGEHVSSFKKGDRVFTVSTLSGGYAEYALAADDTVYMLPEKLDFKQGAAIGIPYFTACLALLHSACVKAGEIVLIHGASGGVGIAACQIARAYGLKVLGTAG 181          
BLAST of FC869053 vs. ExPASy Swiss-Prot
Match: QOR_LAMGU (Quinone oxidoreductase OS=Lama guanicoe GN=CRYZ PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.465e-18
Identity = 62/174 (35.63%), Postives = 91/174 (52.30%), Query Frame = 1
Query:  118 MKAIVITQPGSPEVLQLQ-EVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPHLGLECSGTILSVGKNVSRWKVGDQVCALLG-GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 633
            M+AI +++ G PEVL+LQ +V  P  ++ +VLIKV+A  +N  DT  R G+Y          GL+ +G I +VG+ VS +K GD+V       GGYAE        V  +P  +  +  AA      T +  +  ++    GES LVHG S G+G  A Q+ +    +V  TAG
Sbjct:    8 MRAIRVSEFGGPEVLKLQSDVAVPIPEEHQVLIKVQACGVNPVDTYIRSGTYSRKPRLPYTPGLDVAGLIEAVGERVSAFKKGDRVFTTSTVSGGYAEYALAADHTVYKLPGELDFQKGAAIGVPYFTAYRALLHSACAKAGESVLVHGASGGVGLAACQIARACCFKVLGTAG 181          
BLAST of FC869053 vs. ExPASy Swiss-Prot
Match: QOR_PSEAE (Quinone oxidoreductase OS=Pseudomonas aeruginosa GN=qor PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.525e-18
Identity = 58/170 (34.12%), Postives = 85/170 (50.00%), Query Frame = 1
Query:  121 KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPHLGLECSGTILSVGKNVSRWKVGDQVCALLGG-GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVT 627
            K I     G PEVL+ ++ +  +    EV ++  A  LN  DT  R G YP P G    LG E +G + +VG  V+R+KVGD+V    G  G Y+E   +   +++ +P G+  + AAA      T    +  T  L  GE+ L H  + G+G FA Q  K  GV++  T
Sbjct:    3 KRIQFAAYGGPEVLEYRDYQPAEPGPREVRVRNRAIGLNFIDTYYRSGLYPAP-GLPSGLGSEGAGEVEAVGSEVTRFKVGDRVAYATGPLGAYSELHVLAEEKLVHLPDGIDFEQAAAVMLKGLTTQYLLRQTYELRGGETILFHAAAGGVGLFACQWAKALGVQLIGT 171          
BLAST of FC869053 vs. ExPASy Swiss-Prot
Match: VAT1_HUMAN (Synaptic vesicle membrane protein VAT-1 homolog OS=Homo sapiens GN=VAT1 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.246e-17
Identity = 59/188 (31.38%), Postives = 99/188 (52.66%), Query Frame = 1
Query:   82 ESFTSTLESVGTMKAIVITQPGSPEVLQLQE--VEDPQIKDDEVLIKVEATALNRADTLQRKGSYP--PPKGASPHLGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGK-CQGVRVFVTA 630
            E   +   S   ++ +V+T  G  + ++LQ      P     ++ +++ A  LN AD + R+G Y   PP   +P  G+E +G +++VG+ VS  K GD+V  L   G + E+V VP+ Q   +P  ++ ++AAA      T +  +F   +L PG S LVH  + G+G  A+Q+ +  + V VF TA
Sbjct:   36 EGAAAAAASPPLLRCLVLTGFGGYDKVKLQSRPAAPPAPGPGQLTLRLRACGLNFADLMARQGLYDRLPPLPVTP--GMEGAGVVIAVGEGVSDRKAGDRVMVLNRSGMWQEEVTVPSVQTFLIPEAMTFEEAAALLVNYITAYMVLFDFGNLQPGHSVLVHMAAGGVGMAAVQLCRTVENVTVFGTA 221          
BLAST of FC869053 vs. ExPASy Swiss-Prot
Match: VAT1_MOUSE (Synaptic vesicle membrane protein VAT-1 homolog OS=Mus musculus GN=Vat1 PE=2 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 6.534e-17
Identity = 59/184 (32.07%), Postives = 97/184 (52.72%), Query Frame = 1
Query:   94 STLESVGTMKAIVITQPGSPEVLQLQE--VEDPQIKDDEVLIKVEATALNRADTLQRKGSYP--PPKGASPHLGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGK-CQGVRVFVTA 630
            S   S   ++ +V+T  G  + ++LQ      P     ++ ++V A  LN AD + R+G Y   PP   +P  G+E +G +++VG+ V   K GD+V  L   G + E+V VP+ Q   +P  ++ ++AAA      T +  +F   +L PG S LVH  + G+G  A+Q+ +  + V VF TA
Sbjct:   53 SASASAPPLRCLVLTGFGGYDKVKLQSRPAVPPAPGPGQLTLRVRACGLNFADLMGRQGLYDRLPPLPVTP--GMEGAGVVVAVGEGVGDRKAGDRVMVLNRSGMWQEEVTVPSAQTFLMPEAMTFEEAAALLVNYITAYMVLFDFGNLRPGHSVLVHMAAGGVGMAALQLCRTVENVTVFGTA 234          
BLAST of FC869053 vs. ExPASy Swiss-Prot
Match: PHAS_MYCTU (Phthioceranic/hydroxyphthioceranic acid synthase OS=Mycobacterium tuberculosis GN=pks2 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.534e-17
Identity = 49/167 (29.34%), Postives = 79/167 (47.31%), Query Frame = 1
Query:  133 ITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPHLGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 633
            I  PG  + ++L           ++ + V A+++N AD L   G YP  +G  P LG + +G + +VG  V+  KVGD V  +   G +   V   A     +P G+    AAA      T W  +   + +  G++ L+H G+ G+G  AI + +  G  +F TAG
Sbjct: 1432 IRTPGDMQTIELAAFHRVPPGPGQIEVAVRASSVNFADVLIAFGRYPSFEGHLPQLGTDFAGVVTAVGPGVTDHKVGDHVGGMSPNGCWGTFVTCDARLAATLPPGLGDAQAAAVTTAHATAWYGLHELARIRAGDTVLIHSGTGGVGQAAIAIARAAGAEIFATAG 1598          
BLAST of FC869053 vs. ExPASy Swiss-Prot
Match: PHAS_MYCTA (Phthioceranic/hydroxyphthioceranic acid synthase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=pks2 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.534e-17
Identity = 49/167 (29.34%), Postives = 79/167 (47.31%), Query Frame = 1
Query:  133 ITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPHLGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 633
            I  PG  + ++L           ++ + V A+++N AD L   G YP  +G  P LG + +G + +VG  V+  KVGD V  +   G +   V   A     +P G+    AAA      T W  +   + +  G++ L+H G+ G+G  AI + +  G  +F TAG
Sbjct: 1432 IRTPGDMQTIELAAFHRVPPGPGQIEVAVRASSVNFADVLIAFGRYPSFEGHLPQLGTDFAGVVTAVGPGVTDHKVGDHVGGMSPNGCWGTFVTCDARLAATLPPGLGDAQAAAVTTAHATAWYGLHELARIRAGDTVLIHSGTGGVGQAAIAIARAAGAEIFATAG 1598          
BLAST of FC869053 vs. ExPASy Swiss-Prot
Match: PHAS_MYCBP (Phthioceranic/hydroxyphthioceranic acid synthase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=pks2 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.534e-17
Identity = 49/167 (29.34%), Postives = 79/167 (47.31%), Query Frame = 1
Query:  133 ITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPHLGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 633
            I  PG  + ++L           ++ + V A+++N AD L   G YP  +G  P LG + +G + +VG  V+  KVGD V  +   G +   V   A     +P G+    AAA      T W  +   + +  G++ L+H G+ G+G  AI + +  G  +F TAG
Sbjct: 1432 IRTPGDMQTIELAAFHRVPPGPGQIEVAVRASSVNFADVLIAFGRYPSFEGHLPQLGTDFAGVVTAVGPGVTDHKVGDHVGGMSPNGCWGTFVTCDARLAATLPPGLGDAQAAAVTTAHATAWYGLHELARIRAGDTVLIHSGTGGVGQAAIAIARAAGAEIFATAG 1598          
BLAST of FC869053 vs. ExPASy Swiss-Prot
Match: PHAS_MYCBO (Phthioceranic/hydroxyphthioceranic acid synthase OS=Mycobacterium bovis GN=pks2 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.534e-17
Identity = 49/167 (29.34%), Postives = 79/167 (47.31%), Query Frame = 1
Query:  133 ITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPHLGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 633
            I  PG  + ++L           ++ + V A+++N AD L   G YP  +G  P LG + +G + +VG  V+  KVGD V  +   G +   V   A     +P G+    AAA      T W  +   + +  G++ L+H G+ G+G  AI + +  G  +F TAG
Sbjct: 1432 IRTPGDMQTIELAAFHRVPPGPGQIEVAVRASSVNFADVLIAFGRYPSFEGHLPQLGTDFAGVVTAVGPGVTDHKVGDHVGGMSPNGCWGTFVTCDARLAATLPPGLGDAQAAAVTTAHATAWYGLHELARIRAGDTVLIHSGTGGVGQAAIAIARAAGAEIFATAG 1598          
BLAST of FC869053 vs. ExPASy Swiss-Prot
Match: QOR_ECOLI (Quinone oxidoreductase OS=Escherichia coli (strain K12) GN=qor PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.115e-16
Identity = 55/164 (33.54%), Postives = 79/164 (48.17%), Query Frame = 1
Query:  145 GSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPHLGLECSGTILSVGKNVSRWKVGDQVC-ALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 633
            G PEVLQ  E       ++E+ ++ +A  +N  DT  R G YPPP   S  LG E +G +  VG  V   K GD+V  A    G Y+    + A +   +P+ +S + AAA      TV+  +  T  + P E FL H  + G+G  A Q  K  G ++  T G
Sbjct:   11 GGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSG-LGTEAAGIVSKVGSGVKHIKAGDRVVYAQSALGAYSSVHNIIADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG 173          
The following BLAST results are available for this feature:
BLAST of FC869053 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
QOR_PIG2.653e-1835.06Quinone oxidoreductase OS=Sus scrofa GN=CRYZ PE=2 ... [more]
QOR_LAMGU3.465e-1835.63Quinone oxidoreductase OS=Lama guanicoe GN=CRYZ PE... [more]
QOR_PSEAE4.525e-1834.12Quinone oxidoreductase OS=Pseudomonas aeruginosa G... [more]
VAT1_HUMAN2.246e-1731.38Synaptic vesicle membrane protein VAT-1 homolog OS... [more]
VAT1_MOUSE6.534e-1732.07Synaptic vesicle membrane protein VAT-1 homolog OS... [more]
PHAS_MYCTU8.534e-1729.34Phthioceranic/hydroxyphthioceranic acid synthase O... [more]
PHAS_MYCTA8.534e-1729.34Phthioceranic/hydroxyphthioceranic acid synthase O... [more]
PHAS_MYCBP8.534e-1729.34Phthioceranic/hydroxyphthioceranic acid synthase O... [more]
PHAS_MYCBO8.534e-1729.34Phthioceranic/hydroxyphthioceranic acid synthase O... [more]
QOR_ECOLI1.115e-1633.54Quinone oxidoreductase OS=Escherichia coli (strain... [more]

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Properties
Property NameValue
Genbank descriptionC31008A05EF AbioticL1 Citrus clementina cDNA clone C31008A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869053 ID=FC869053; Name=FC869053; organism=Citrus clementina; type=EST; length=634bp
ATTTTTCATGAAGTCAAAGGGGAAATGGGAAATGGGAAAAACATCATCAT
TTGCATTAGAATTGTATAAATAAATATTTTGGAATCATTTACTTCTACTC
TGGAAAGTGTAGGCACAATGAAGGCAATAGTGATAACTCAACCCGGTAGC
CCAGAAGTGCTGCAGTTGCAAGAAGTAGAAGACCCTCAAATCAAAGATGA
CGAAGTGTTGATCAAAGTCGAAGCTACTGCCCTGAACCGGGCCGACACTC
TTCAACGAAAAGGCTCCTACCCTCCACCCAAAGGCGCCAGCCCTCACCTG
GGTCTCGAATGTTCCGGAACCATCCTGTCCGTTGGTAAAAACGTCTCTAG
ATGGAAAGTCGGCGACCAGGTGTGTGCTCTGCTTGGTGGAGGAGGGTATG
CTGAGAAAGTGGCTGTTCCAGCTGGACAAGTTCTTCCCGTTCCATCTGGT
GTCTCACTCAAAGATGCTGCTGCGTTTCCGGAGGTGGCCTGCACTGTTTG
GTCAACGGTTTTCATGACCAGTCACCTATCCCCAGGGGAGTCATTTCTGG
TTCATGGGGGCTCTAGTGGAATTGGTACATTTGCGATTCAGATGGGAAAA
TGCCAAGGAGTGAGAGTCTTTGTTACAGCAGGGA
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