FC869053

Overview
NameFC869053
Unique NameFC869053
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12734 contig Ccv1_Contig12734:1..625. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869053 vs. ExPASy Swiss-Prot
Match: VAT1_TORCA (Synaptic vesicle membrane protein VAT-1 OS=Torpedo californica PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.901e-16
Identity = 54/172 (31.40%), Postives = 94/172 (54.65%), Query Frame = 1
Query:  124 AIVITQPGSPEVLQLQEVED-PQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPHLGLECSGTILSVGKNVSRWKVGDQVCAL-LGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGK-CQGVRVFVTA 630
            AIV+   G  + ++++  +  P +K DE+L++V+A  LN +D L R+G++    G    LG EC+G + ++G  V   KVGD++  L + GG + E V     +   +P G+S ++AAA        +  ++  ++L P +S L+H  + G+G  A Q+ K    V +F TA
Sbjct:   29 AIVLNGVGGYDKVKVEVKKGVPTLKSDEILVRVQACGLNFSDLLVRQGAF----GKHHSLGTECAGVVEAIGDLVIDRKVGDKIIMLNIDGGLWTELVVTTVNRTFLMPDGMSFQEAAAISVNYTAAYVMIYDFANLRPSQSILIHMAAGGVGIAATQLCKLVHDVTIFGTA 196          
BLAST of FC869053 vs. ExPASy Swiss-Prot
Match: QOR_SALTY (Quinone oxidoreductase OS=Salmonella typhimurium GN=qor PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.483e-16
Identity = 55/164 (33.54%), Postives = 78/164 (47.56%), Query Frame = 1
Query:  145 GSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPHLGLECSGTILSVGKNVSRWKVGDQVC-ALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 633
            G PEVLQ  E    +  + E+ ++ +A  +N  DT  R G YPPP      LG E +G +  VG  V   +VGD+V  A    G Y+    V A +   +P  +S + AAA      TV+  +  T  + P E FL H  + G+G  A Q  K  G ++  T G
Sbjct:   11 GGPEVLQTVEFTPAEPAEHEIQVENKAIGINFIDTYIRSGLYPPPS-LPAGLGTEAAGVVSKVGNGVEHIRVGDRVVYAQSTLGAYSSVHNVTADKAAILPDAISFEQAAASFLKGLTVFYLLRKTYEVKPDEPFLFHAAAGGVGLIACQWAKALGAKLIGTVG 173          
BLAST of FC869053 vs. ExPASy Swiss-Prot
Match: RT4I1_DANRE (Reticulon-4-interacting protein 1 homolog, mitochondrial OS=Danio rerio GN=rtn4ip1 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 7.988e-15
Identity = 71/204 (34.80%), Postives = 95/204 (46.57%), Query Frame = 1
Query:   85 SFTSTLESVGTMKAIVITQPGSPEVLQLQEVEDPQI--KDDEVLIKVEATALNRADTLQRKG-------------SYPPPKGASPH-LGLECSGTILSVGKNVSRWKVGDQVCALLGG---GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGES----FLVHGGSSGIGTFAIQMGKCQGVRVFVT 627
            SF++   +V  M A VI + G  +VL+  +     I    +EV++KV A  LN  D   R G             +     G  P  LG + SG I+  G +V  +K GDQV A +     G  AE V V   +V   P  +   +AA+ P VA T WS +  T  L+   S     L+ GGS G+GTFAIQM K  G  V VT
Sbjct:   20 SFSAARRTV--MPAWVIDKYGKNDVLRFTKNAALPIIHYPNEVVVKVHAAGLNPIDISMRGGYGAATMAMKRDPLNISQSGGEFPLILGRDVSGEIMECGLDVKYFKPGDQVWAAIPPWKQGSLAEFVVVSGNEVSHKPKSLRHDEAASIPYVAATAWSAIVNTGGLNKDNSAKKRVLILGGSGGVGTFAIQMVKAWGAHVTVT 221          
BLAST of FC869053 vs. ExPASy Swiss-Prot
Match: QOR_YEAST (Probable quinone oxidoreductase OS=Saccharomyces cerevisiae GN=ZTA1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.964e-14
Identity = 52/175 (29.71%), Postives = 93/175 (53.14%), Query Frame = 1
Query:  121 KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPH-LGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPA-GQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTS---HLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTA 630
            K I+I + G  +V++ ++   P I ++E+LIK + T +N  ++  RKG YP  K   P+ LG E SGT+++ GK V+ ++VGDQV A +    +A+   + + G V+ +P G S ++   +      V + +  T+   H+  G+  L+   + G+G    Q+ K +G      A
Sbjct:   10 KVILIDEIGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIYPCEK---PYVLGREASGTVVAKGKGVTNFEVGDQV-AYISNSTFAQYSKISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVA 180          
BLAST of FC869053 vs. ExPASy Swiss-Prot
Match: PKS14_DICDI (Probable polyketide synthase 14 OS=Dictyostelium discoideum GN=pks14 PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.964e-14
Identity = 49/158 (31.01%), Postives = 85/158 (53.80%), Query Frame = 1
Query:  190 IKDDEVLIKVEATALNRADTLQRKGSYPPPKGA------SPHLGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHL--SPGESFLVHGGSSGIGTFAIQMGKCQGVR--VFVTAG 633
            +K++++ + V+AT +N  D L   G  PP   +       P  GLE SG + ++G N++ +K+GDQ+   +G    +  + V   Q+   P+ ++  +AA+ P V  T + ++F   +L     ES L+H GS GIG  A+ + K +G +  +FVT G
Sbjct: 1855 LKENQLEVHVKATGINYKDYLLYCGLLPPEMVSHNNDINDPEFGLEFSGIVSAIGSNINDFKIGDQIYG-IGYDTTSTHIIVDYNQIYHKPTNINHIEAASIPGVYLTSYHSIFNVGNLKIKRNESILIHSGSGGIGLSALNILKWKGHKSHIFVTVG 2011          
BLAST of FC869053 vs. ExPASy Swiss-Prot
Match: QORL_ARATH (Quinone oxidoreductase-like protein At1g23740, chloroplastic OS=Arabidopsis thaliana GN=At1g23740 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 6.762e-14
Identity = 56/172 (32.56%), Postives = 84/172 (48.84%), Query Frame = 1
Query:  118 MKAIVITQPGSPEVLQLQE-VEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPHL-GLECSGTILSVGKNVSRWKVGDQVCALLGG---------GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGK 600
            MKA V +  G  +VL+L+  +  P+IK+D+VLIKV A ALN  D  +R+G +       P + G + +G ++ VG  V   K GD+V A +           G  AE  AV    +   P  +    AA  P +A        + +  S G+S LV  G+ G+G+  IQ+ K
Sbjct:   78 MKAWVYSDYGGVDVLKLESNIVVPEIKEDQVLIKVVAAALNPVDAKRRQGKFKATDSPLPTVPGYDVAGVVVKVGSAVKDLKEGDEVYANVSEKALEGPKQFGSLAEYTAVEEKLLALKPKNIDFAQAAGLP-LAIETADEGLVRTEFSAGKSILVLNGAGGVGSLVIQLAK 248          
BLAST of FC869053 vs. ExPASy Swiss-Prot
Match: MCAS_MYCBO (Mycocerosic acid synthase OS=Mycobacterium bovis GN=mas PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 6.762e-14
Identity = 44/184 (23.91%), Postives = 85/184 (46.20%), Query Frame = 1
Query:   82 ESFTSTLESVGTMKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPHLGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 633
            E  T+ L+       + + +PG  + L+    +       ++ + V  +++N AD L   G +P      P LG++  G + +VG+ V+  +VGD+V     GG +   +   A   + +P G++ + A        T W  +   + +  G+  L+H  + G+G  AI + + +G  +F TAG
Sbjct: 1408 ERRTAVLDPDHDGMRVQVRRPGDLQTLEFVASDRVPPGPGQIEVAVSMSSINFADVLIAFGRFPIIDDREPQLGMDFVGVVTAVGEGVTGHQVGDRVGGFSEGGCWRTFLTCDANLAVTLPPGLTDEQAITAATAHATAWYGLNDLAQIKAGDKVLIHSATGGVGQAAISIARAKGAEIFATAG 1591          
BLAST of FC869053 vs. ExPASy Swiss-Prot
Match: QORH_SPIOL (Quinone-oxidoreductase homolog, chloroplastic OS=Spinacia oleracea GN=QOR PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.831e-14
Identity = 54/173 (31.21%), Postives = 81/173 (46.82%), Query Frame = 1
Query:  145 GSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPP--PKGASPHLGLECSGTILSVGKNVSRWKVGDQVCALLG---GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHL---SPGE--SFLVHGGSSGIGTFAIQMGKCQGVRVFVTAG 633
            G  + L+  EV  P  K DE+L+K+EA  LN  D   +KG   P  P+      G + +G ++  G  V+R+K GD+V A+L    GG  AE         +  P  VS  + AA P  A T    +   +++     GE  + L+   S G+G +A+Q+ K     V  T G
Sbjct:   16 GGTDALKHVEVAVPDPKSDELLLKIEAATLNPIDWKIQKGVLRPLLPRKFPTIPGTDVAGEVVQAGSAVNRFKTGDKVVAVLSHATGGALAEYAVAKENLTVARPPEVSAAEGAALPVAALTAHQALTQFANIKLDGSGERKNILITAASGGVGHYAVQLAKLGNTHVTATCG 188          
BLAST of FC869053 vs. ExPASy Swiss-Prot
Match: PKS1_DICDI (Probable polyketide synthase 1 OS=Dictyostelium discoideum GN=stlA PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.831e-14
Identity = 48/164 (29.27%), Postives = 74/164 (45.12%), Query Frame = 1
Query:  175 VEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGA-----SPHLGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQG------VRVFVTAG 633
            ++   + ++++ IKVE   +N  D L  KG  P          +P  GLECSG I  +G NV+ + VG  V            V      V+  P  +S  +AA+ P V CT W ++F    LS  ES L+H  + G+G  ++ + K +         V+ T G
Sbjct: 1948 IKQSMLTENQIEIKVECVGINFKDNLFYKGLLPQEIFRMGDIYNPPYGLECSGVITRIGSNVTEYSVGQNVFGF-ARHSLGSHVVTNKDLVILKPDTISFSEAASIPVVYCTAWYSLFNIGQLSNEESILIHSATGGVGLASLNLLKMKNQQQQPLTNVYATVG 2110          
BLAST of FC869053 vs. ExPASy Swiss-Prot
Match: PKS44_DICDI (Probable polyketide synthase 44 OS=Dictyostelium discoideum GN=pks44 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.153e-13
Identity = 50/164 (30.49%), Postives = 82/164 (50.00%), Query Frame = 1
Query:  172 EVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKG------ASPHLGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLS--PGESFLVHGGSSGIGTFAIQMGKCQGV--RVFVTAG 633
            E +   +K++E+ ++V AT +N  D+L  +   PP         + P  G ECSG +  +G  V ++KVGD V  +      +  +      VL  P  +S  +AA+ P V CT + ++F + +LS    ES L+H  S GIG   + + K  G   +++VT G
Sbjct: 1890 EAKQSNLKENEIEVQVVATGINFKDSLIFRNLVPPVLANHEGDFSKPEFGFECSGIVSRIGSKVKKFKVGDSVLGISWKSTSSHAINYQDAFVLK-PDNISFVEAASIPIVYCTSFYSLFYSGNLSIKNNESVLIHQASGGIGLACLNILKSCGFKSKLYVTVG 2052          
The following BLAST results are available for this feature:
BLAST of FC869053 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
VAT1_TORCA1.901e-1631.40Synaptic vesicle membrane protein VAT-1 OS=Torpedo... [more]
QOR_SALTY2.483e-1633.54Quinone oxidoreductase OS=Salmonella typhimurium G... [more]
RT4I1_DANRE7.988e-1534.80Reticulon-4-interacting protein 1 homolog, mitocho... [more]
QOR_YEAST3.964e-1429.71Probable quinone oxidoreductase OS=Saccharomyces c... [more]
PKS14_DICDI3.964e-1431.01Probable polyketide synthase 14 OS=Dictyostelium d... [more]
QORL_ARATH6.762e-1432.56Quinone oxidoreductase-like protein At1g23740, chl... [more]
MCAS_MYCBO6.762e-1423.91Mycocerosic acid synthase OS=Mycobacterium bovis G... [more]
QORH_SPIOL8.831e-1431.21Quinone-oxidoreductase homolog, chloroplastic OS=S... [more]
PKS1_DICDI8.831e-1429.27Probable polyketide synthase 1 OS=Dictyostelium di... [more]
PKS44_DICDI1.153e-1330.49Probable polyketide synthase 44 OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionC31008A05EF AbioticL1 Citrus clementina cDNA clone C31008A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869053 ID=FC869053; Name=FC869053; organism=Citrus clementina; type=EST; length=634bp
ATTTTTCATGAAGTCAAAGGGGAAATGGGAAATGGGAAAAACATCATCAT
TTGCATTAGAATTGTATAAATAAATATTTTGGAATCATTTACTTCTACTC
TGGAAAGTGTAGGCACAATGAAGGCAATAGTGATAACTCAACCCGGTAGC
CCAGAAGTGCTGCAGTTGCAAGAAGTAGAAGACCCTCAAATCAAAGATGA
CGAAGTGTTGATCAAAGTCGAAGCTACTGCCCTGAACCGGGCCGACACTC
TTCAACGAAAAGGCTCCTACCCTCCACCCAAAGGCGCCAGCCCTCACCTG
GGTCTCGAATGTTCCGGAACCATCCTGTCCGTTGGTAAAAACGTCTCTAG
ATGGAAAGTCGGCGACCAGGTGTGTGCTCTGCTTGGTGGAGGAGGGTATG
CTGAGAAAGTGGCTGTTCCAGCTGGACAAGTTCTTCCCGTTCCATCTGGT
GTCTCACTCAAAGATGCTGCTGCGTTTCCGGAGGTGGCCTGCACTGTTTG
GTCAACGGTTTTCATGACCAGTCACCTATCCCCAGGGGAGTCATTTCTGG
TTCATGGGGGCTCTAGTGGAATTGGTACATTTGCGATTCAGATGGGAAAA
TGCCAAGGAGTGAGAGTCTTTGTTACAGCAGGGA
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