FC869060

Overview
NameFC869060
Unique NameFC869060
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length601
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9408 contig Ccv1_Contig9408:14..614. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869060 vs. ExPASy Swiss-Prot
Match: CHS1_IPOBA (Chalcone synthase LF1 OS=Ipomoea batatas GN=CHS-LF1 PE=2 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 2.981e-69
Identity = 127/179 (70.95%), Postives = 145/179 (81.01%), Query Frame = 2
Query:   65 MVTTEEIRKAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAE 601
            MVT EE+RKAQRAEG ATILAI T TP NCV Q+ YPDYYF ITNSEH T            SMI KR+M LTEEILK NP+ C +M  SLDARQDI++VEVPKLGKEAA  AIKEWGQPKS ITH++FCT++G+DMPGADYQLT+L+GL P VKR+M+YQQGC+AG T+LRLAKDLAE
Sbjct:    1 MVTVEEVRKAQRAEGPATILAIGTVTPANCVNQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMITKRYMHLTEEILKENPSFCEYMAPSLDARQDIAVVEVPKLGKEAAQSAIKEWGQPKSKITHVVFCTTSGIDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAE 179          
BLAST of FC869060 vs. ExPASy Swiss-Prot
Match: CHSY_CARAN (Chalcone synthase OS=Cardamine amara GN=CHS PE=3 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 3.893e-69
Identity = 128/175 (73.14%), Postives = 143/175 (81.71%), Query Frame = 2
Query:   77 EEIRKAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAE 601
            +EIRKAQRA+G A ILAI TA P N VIQA+YPDYYF ITNSEHMT            S IRKRHM +TEE LK NPNMC +M  SLDARQDI +VEVPKLGKEAA KAIKEWGQPKS ITHL+FCT++GVDMPGADYQLT+L+GL P VKR+M+YQQGC+AG T+LRLAKDLAE
Sbjct:   10 DEIRKAQRADGPAGILAIGTANPANYVIQAEYPDYYFRITNSEHMTDLKEKFKRMCDKSTIRKRHMHVTEEFLKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAAVKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAE 184          
BLAST of FC869060 vs. ExPASy Swiss-Prot
Match: CHS4_SORBI (Chalcone synthase 4 OS=Sorghum bicolor GN=CHS4 PE=3 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 3.893e-69
Identity = 127/178 (71.35%), Postives = 143/178 (80.34%), Query Frame = 2
Query:   68 VTTEEIRKAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAE 601
            VT EE+RKAQRA G AT+LAI TATP NCV QADYPDYYF IT SEHMT            S IRKR+M LTEE L  NPNMC +M  SLDARQDI +VEVPKLGK AA KAIKEWGQPKS ITHL+FCT++GVDMPGADYQLT+++GL P VKR+M+YQQGC+AG T+LR+AKDLAE
Sbjct:    6 VTVEEVRKAQRATGPATVLAIGTATPANCVHQADYPDYYFRITKSEHMTELKEKFKRMCDKSQIRKRYMHLTEEYLAENPNMCAYMAPSLDARQDIVVVEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLGLRPSVKRLMMYQQGCFAGGTVLRVAKDLAE 183          
BLAST of FC869060 vs. ExPASy Swiss-Prot
Match: CHS3_GERHY (Chalcone synthase 3 OS=Gerbera hybrida GN=CHS3 PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 3.893e-69
Identity = 127/179 (70.95%), Postives = 144/179 (80.45%), Query Frame = 2
Query:   65 MVTTEEIRKAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAE 601
            ++  E IRKAQRAEG ATILAI TATP NCV QADYPDYYF +T SEHM             SMIRKR+M +TEE LK NP+MC  M  SLDARQD+ +VEVPKLGKEAATKAIKEWG PKS ITHL+FCT++GVDMPGADYQLT+L+GL P VKR+M+YQQGC+AG T+LRLAKDLAE
Sbjct:    7 VIDVETIRKAQRAEGPATILAIGTATPANCVYQADYPDYYFRVTESEHMVDLKEKFQRMCDKSMIRKRYMHITEEFLKENPSMCKFMAPSLDARQDLVVVEVPKLGKEAATKAIKEWGFPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAE 185          
BLAST of FC869060 vs. ExPASy Swiss-Prot
Match: CHS1_CITSI (Chalcone synthase 1 OS=Citrus sinensis GN=CHS1 PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 3.893e-69
Identity = 126/179 (70.39%), Postives = 149/179 (83.24%), Query Frame = 2
Query:   65 MVTTEEIRKAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAE 601
            MVT +E+RKAQRA+G ATI+AI TATPPNCV Q+ YPDYYF ITNSEHMT            SMI+KR+M LTEEILK NPN+C +M  SLD RQD+ +VEVP+LGK AAT+AIKEWGQPKS ITHL+FCT++GVDMPGADY+LT+L+GL P VKR+M+YQQGC+AG T+LRLAKDLAE
Sbjct:    1 MVTVDEVRKAQRAQGPATIMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYMYLTEEILKENPNVCAYMAPSLDTRQDMVVVEVPRLGK-AATEAIKEWGQPKSKITHLVFCTTSGVDMPGADYRLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAE 178          
BLAST of FC869060 vs. ExPASy Swiss-Prot
Match: CHS7_IPOBA (Chalcone synthase DIII OS=Ipomoea batatas GN=CHS-DIII PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 5.084e-69
Identity = 128/179 (71.51%), Postives = 145/179 (81.01%), Query Frame = 2
Query:   65 MVTTEEIRKAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAE 601
            MVT EE+RKA+RAEG ATILAI TATP NCV Q+ YPDYYF ITNSEH T            SMI KR+M LTEEILK NP+ C +M  SLDARQDI++VEVPKLGKEAA  AIKEWGQPKS ITH+ FCT++GVDMPGADYQLT+L+GL P VKR+M+YQQGC+AG T+LRLAKDLAE
Sbjct:    1 MVTVEEVRKAKRAEGPATILAIGTATPANCVNQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMITKRYMHLTEEILKENPSFCEYMAPSLDARQDIAVVEVPKLGKEAAQSAIKEWGQPKSKITHVFFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAE 179          
BLAST of FC869060 vs. ExPASy Swiss-Prot
Match: CHS1_HORVU (Chalcone synthase 1 OS=Hordeum vulgare GN=CHS1 PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 5.084e-69
Identity = 125/178 (70.22%), Postives = 144/178 (80.90%), Query Frame = 2
Query:   68 VTTEEIRKAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAE 601
            +T EE+R AQRAEG AT+LAI TATP NCV QADYPDYYF IT S+HM             S IRKR+M LTEEIL+ NPNMC +M  SLDARQDI +VEVPKLGK AA KAIKEWGQP+S ITHL+FCT++GVDMPGADYQLT+++GL P VKR+M+YQQGC+AG T+LRLAKDLAE
Sbjct:    5 MTVEEVRNAQRAEGPATVLAIGTATPANCVYQADYPDYYFKITKSDHMADLKEKFKRMCDKSQIRKRYMHLTEEILEENPNMCAYMAPSLDARQDIVVVEVPKLGKAAAQKAIKEWGQPRSKITHLVFCTTSGVDMPGADYQLTKMLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAE 182          
BLAST of FC869060 vs. ExPASy Swiss-Prot
Match: CHSY_MATIN (Chalcone synthase OS=Matthiola incana GN=CHS PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 6.640e-69
Identity = 127/175 (72.57%), Postives = 143/175 (81.71%), Query Frame = 2
Query:   77 EEIRKAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAE 601
            +EIRKAQRA+G A IL I TA P N VIQA+YPDYYF ITNSEHMT            SMIRKRHM LTE+ LK NPNMC +M  SLDARQDI +VEVPKLGKEAA +AIKEWGQPKS ITHL+FCT++GVDMPGADYQLT+L+GL P VKR+M+YQQGC+AG T+LRLAKDLAE
Sbjct:    9 DEIRKAQRADGPAGILGIGTANPANHVIQAEYPDYYFRITNSEHMTDLKEKFQRMCDKSMIRKRHMHLTEDFLKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAAVRAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAE 183          
BLAST of FC869060 vs. ExPASy Swiss-Prot
Match: CHS3_SINAL (Chalcone synthase 3 OS=Sinapis alba GN=CHS3 PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 6.640e-69
Identity = 128/175 (73.14%), Postives = 143/175 (81.71%), Query Frame = 2
Query:   77 EEIRKAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAE 601
            +EIRKAQRA+G A ILAI TA P N VIQA+YPDYYF ITNSEHMT            S IRKRHM LTEE LK NPNMC +M  SLDARQDI +VEVPKLGKEAA KAIKEWGQPKS ITH++FCT++GVDMPGADYQLT+L+GL P VKR+M+YQQGC+AG T+LRLAKDLAE
Sbjct:   10 DEIRKAQRADGPAGILAIGTANPANHVIQAEYPDYYFRITNSEHMTDLKEKFKRMCDKSTIRKRHMHLTEEFLKDNPNMCAYMAPSLDARQDIVVVEVPKLGKEAAVKAIKEWGQPKSKITHVVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAE 184          
BLAST of FC869060 vs. ExPASy Swiss-Prot
Match: CHS3_CAMSI (Chalcone synthase 3 OS=Camellia sinensis GN=CHS3 PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 6.640e-69
Identity = 126/179 (70.39%), Postives = 146/179 (81.56%), Query Frame = 2
Query:   65 MVTTEEIRKAQRAEGLATILAISTATPPNCVIQADYPDYYFGITNSEHMTXXXXXXXXXXXXSMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAE 601
            MVT E++ +AQRA G AT+LAI TATPPNCV Q+ YPDYYF ITNSEH              SMI+KR+M LTEEILK NP +C +M  SLDARQD+ +VEVPKLGKEAATKAIKEWGQPKS ITHL+FCT++GVDMPGADYQLT+L+GL P VKR+M+YQQGC+AG T+LRLAKDLAE
Sbjct:    1 MVTVEDVWRAQRARGPATVLAIGTATPPNCVDQSTYPDYYFRITNSEHKVELKEKFKRMCDKSMIKKRYMYLTEEILKENPLVCEYMAPSLDARQDMVVVEVPKLGKEAATKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAE 179          
The following BLAST results are available for this feature:
BLAST of FC869060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
CHS1_IPOBA2.981e-6970.95Chalcone synthase LF1 OS=Ipomoea batatas GN=CHS-LF... [more]
CHSY_CARAN3.893e-6973.14Chalcone synthase OS=Cardamine amara GN=CHS PE=3 S... [more]
CHS4_SORBI3.893e-6971.35Chalcone synthase 4 OS=Sorghum bicolor GN=CHS4 PE=... [more]
CHS3_GERHY3.893e-6970.95Chalcone synthase 3 OS=Gerbera hybrida GN=CHS3 PE=... [more]
CHS1_CITSI3.893e-6970.39Chalcone synthase 1 OS=Citrus sinensis GN=CHS1 PE=... [more]
CHS7_IPOBA5.084e-6971.51Chalcone synthase DIII OS=Ipomoea batatas GN=CHS-D... [more]
CHS1_HORVU5.084e-6970.22Chalcone synthase 1 OS=Hordeum vulgare GN=CHS1 PE=... [more]
CHSY_MATIN6.640e-6972.57Chalcone synthase OS=Matthiola incana GN=CHS PE=2 ... [more]
CHS3_SINAL6.640e-6973.14Chalcone synthase 3 OS=Sinapis alba GN=CHS3 PE=2 S... [more]
CHS3_CAMSI6.640e-6970.39Chalcone synthase 3 OS=Camellia sinensis GN=CHS3 P... [more]

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Properties
Property NameValue
Genbank descriptionC31008A12EF AbioticL1 Citrus clementina cDNA clone C31008A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869060 ID=FC869060; Name=FC869060; organism=Citrus clementina; type=EST; length=601bp
AAGCGCAAACTTATCAATTAACTAAGATATAAGTACTGTTTTGGAAGCAA
TCTGACGATCAGAGATGGTAACAACGGAGGAGATTAGAAAGGCTCAGCGA
GCCGAGGGCCTGGCGACCATCCTCGCCATCAGCACGGCAACGCCGCCCAA
TTGTGTCATCCAAGCTGATTATCCTGACTATTACTTCGGGATCACCAACA
GCGAGCACATGACTGAGCTCAAAGAGAAGTTCAAGCTCTTGTGTGAGAAG
TCGATGATAAGAAAGCGTCACATGTGCTTAACAGAAGAGATTTTAAAAGC
AAACCCTAATATGTGCTTACACATGGGGACATCACTCGATGCGCGCCAGG
ACATTTCTCTTGTTGAAGTACCAAAGCTTGGCAAAGAGGCGGCAACCAAA
GCTATCAAAGAATGGGGACAGCCCAAATCCAATATCACCCATCTCATTTT
CTGCACATCTGCAGGCGTCGACATGCCTGGCGCTGACTATCAGCTCACAA
GACTCATCGGCCTCAACCCGGATGTTAAGCGTATGATGATATATCAACAA
GGGTGTTATGCTGGCGCCACCATCCTTCGTCTTGCTAAAGATCTGGCTGA
A
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