FC869080

Overview
NameFC869080
Unique NameFC869080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: GHRB_ERWT9 (Glyoxylate/hydroxypyruvate reductase B OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=ghrB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.787e-17
Identity = 56/178 (31.46%), Postives = 83/178 (46.63%), Query Frame = 3
Query:  171 DAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKNGHFE--LGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSHANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            DAE +   P L + +S SVG             V + +TP                   RRV E  E VKSG+W+        G     K +GI+G+GRIG A+A+R    FG PI Y++R     A  ++   Y ++  L +    L ++  LTE+THH++ R+ +  +  S ILIN
Sbjct:   57 DAEFLRQAPKLRVASSISVGYDNFDVAALNDRGVLLMHTPTVLTETVADTMMALVLSSARRVVEMAERVKSGEWRGSISSDWFGIDVHHKKLGILGMGRIGLALAQRAHLGFGMPILYNARKHHDEAEQRFDAEYCDLDTLLAESDFLCISLPLTEQTHHLIGREQLAKMKRSAILIN 234          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: GHRB_PECCP (Glyoxylate/hydroxypyruvate reductase B OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=ghrB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.872e-16
Identity = 65/235 (27.66%), Postives = 103/235 (43.83%), Query Frame = 3
Query:    6 KISVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGA--DAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKNGHFE--LGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSHANYKYYTNIIDL---ASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            K SV++   +++ L   L   FT+ +L      + F   +  A+    G    G   D + +   P L   ++ SVG             V + +TP                   RRV E  E VK+G+WK G      G+    K++GI+G+GRIG A+A+R    F  P+ Y++R   + A  ++     DL    +    L +   LT ETHH++ R+ +  + PS ILIN
Sbjct:    2 KPSVILYKKIADDLRARLDQHFTVTEL------DAFPSLDHPALATAEGIIGSGGKVDKDFLQHAPRLRAASTISVGYDTFNVDALNEKGVILMHTPTVLTETVADTVLALMLASARRVVEVAERVKAGEWKGGVDSDWFGTDVHHKTIGILGMGRIGLAVAQRAHFGFSMPVLYNARRHHAEAEQRFNARHCDLDTLLAESDFLCITLPLTTETHHLIGREQLAKMKPSAILIN 230          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: GHRB_ERWCT (Glyoxylate/hydroxypyruvate reductase B OS=Erwinia carotovora subsp. atroseptica GN=ghrB PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.751e-16
Identity = 67/238 (28.15%), Postives = 106/238 (44.54%), Query Frame = 3
Query:    6 KISVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGA--DAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKNGHFELGSKFSG-----KSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSHANYKYYTNIIDL---ASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            K SV++   +++ L   L   FT+ +L      + F   +  A+    G    G   D + +   P L   ++ SVG             V + +TP                   RRV E  E VK+G+WK G   +GS + G     K++GI+G+GRIG A+A+R    F  P+ Y++R   + A  ++     DL    +    L +   LT ETHH++ R+ +  + PS ILIN
Sbjct:    2 KPSVILYKKVADDLRARLDQHFTVTEL------DAFPALDHPALATAEGIIGSGGKVDKDFLQHAPRLRAASTISVGYDTFNVDALNEKGVILMHTPTVLTETVADTVLALMLASARRVVEVVERVKAGEWKGG---VGSDWFGTDVHHKTIGILGMGRIGLAVAQRAHFGFSMPVLYNARRHHAEAEERFNARHCDLDTLLAESDFLCITLPLTAETHHLIGREQLAKMKPSAILIN 230          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: GHRB_ENT38 (Glyoxylate/hydroxypyruvate reductase B OS=Enterobacter sp. (strain 638) GN=ghrB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.751e-16
Identity = 62/235 (26.38%), Postives = 106/235 (45.11%), Query Frame = 3
Query:    6 KISVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVG--DTKCGADAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN--GHFELGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSHANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            K SV++   + + L++ L   FT+ ++  ++   +   E++ A  +  G   +    D  L++ +P L   ++ SVG             + + +TP                   RRV E  E VK+G+W    G    G    GK++GIVG+GRIG A+A+R    F  PI Y++R   S A  ++   Y  +  L      + +   LT+ETHH++ +   + +  S I IN
Sbjct:    2 KPSVILYKTLPDDLQKRLEEHFTVTQM--KNLNPETVAEHADAFASAAGLLGSSEKVDTALLEKMPKLRATSTISVGYDNFDVDALNTRKILLMHTPYALTETVADTLMALVLSTARRVVEVAERVKAGEWTKSIGPDWFGVDVHGKTLGIVGMGRIGLALAQRAHFGFNMPILYNARRHHSEAEERFEARYCELETLLQEADYVCLILPLTDETHHLIGKAEFEKMKKSAIFIN 234          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: Y752_STAHJ (Putative 2-hydroxyacid dehydrogenase SH0752 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH0752 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.417e-15
Identity = 51/187 (27.27%), Postives = 83/187 (44.39%), Query Frame = 3
Query:  141 AVVGDTKCGADAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKNGH--FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISY---HSRSEKSHANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            A++       D E+IDS   L+I+A+Y  G             + VTNTP                   RR+ E D+  ++  +      F  G + SGK++GI+GLG IG+A+AKR +AF   I Y   H + EK       Y ++  L  N   + +  +   + HH+++ +    +  +  LIN
Sbjct:   47 ALISILSTNVDQEVIDSASNLKIIANYGAGFNNVDVKYAREKDIDVTNTPKASTASTAELTFGLVLAVARRIVEGDKLSRTQGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAKRAKAFDMDILYTGPHQKKEKEREIGAKYVDLNTLLENADFITINAAYNPDLHHMIDTEQFKLMKSTAYLIN 233          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: GHRB_SHIBS (Glyoxylate/hydroxypyruvate reductase B OS=Shigella boydii serotype 4 (strain Sb227) GN=ghrB PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.075e-15
Identity = 66/237 (27.85%), Postives = 107/237 (45.15%), Query Frame = 3
Query:    6 KISVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRA----VVGDTKCGADAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN--GHFELGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSHANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            K SV++   + + L Q L   FT+ ++   S +     E ++AI A    ++G  +   DA L++ +P L   ++ SVG             + + +TP                   RRV E  E VK+G+W    G    G+    K++GIVG+GRIG A+A+R    F  PI Y++R     A  ++   Y ++  L      + +   LT+ETHH+   +    + PS I IN
Sbjct:    2 KPSVILYKALPDDLLQRLQEHFTVHQVANLSPQTV---EQNAAIFAEAEGLLGSNE-NVDAALLEKMPKLRATSTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKPSAIFIN 234          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: GHRB_KLEP3 (Glyoxylate/hydroxypyruvate reductase B OS=Klebsiella pneumoniae (strain 342) GN=ghrB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.240e-15
Identity = 63/235 (26.81%), Postives = 106/235 (45.11%), Query Frame = 3
Query:    6 KISVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVG--DTKCGADAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN--GHFELGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSHANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            K SV++   + + L Q L   F++ ++  ++ + +   +++ A     G   +    DA L++ +P L   ++ SVG             V + +TP                   RRV E  E VK+G+W    G    GS    K++GIVG+GRIG A+A+R    FG PI Y++R +   A  ++   Y ++  L      + +   L+EETHH+  +     +  S I IN
Sbjct:    2 KPSVILYKTLPDDLLQRLEEHFSVTQV--KNLRPETVSQHAEAFAQAEGLLGSSEKVDAALLEKMPKLRATSTVSVGYDNFDVEALNARRVLLMHTPTVLTETVADTVMALVLSTARRVVEVAERVKAGEWTKSIGPDWFGSDVHHKTLGIVGMGRIGMALAQRAHFGFGMPILYNARRQHPQAEERFNARYCDLDTLLQEADFVCLILPLSEETHHLFGQAQFAKMKSSAIFIN 234          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: GHRB_SHIFL (Glyoxylate/hydroxypyruvate reductase B OS=Shigella flexneri GN=ghrB PE=3 SV=4)

HSP 1 Score: 79.7221 bits (195), Expect = 1.576e-14
Identity = 64/235 (27.23%), Postives = 104/235 (44.26%), Query Frame = 3
Query:    6 KISVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVG--DTKCGADAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN--GHFELGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSHANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            K SV++   + + L Q L A FT+ ++   S +     +N++      G   +    DA L++ +P L   ++ SVG             + + +TP                   RRV E  E VK+G+W    G    G+    K++GIVG+GRIG A+A+RV   F  PI Y++R     A  ++   Y ++  L      + +   LT+ETHH+   +    +  S I IN
Sbjct:    2 KPSVILYKALPDDLLQRLQAHFTVHQVANLSPQTVV--QNAAIFAEAEGLLGSNENVDAALLEKMPKLRATSTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRVHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFIN 234          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: GHRB_ECOL6 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O6 GN=ghrB PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.576e-14
Identity = 66/237 (27.85%), Postives = 106/237 (44.73%), Query Frame = 3
Query:    6 KISVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRA----VVGDTKCGADAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN--GHFELGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSHANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            K SV++   + + L Q L   FT+ ++   S +     E ++AI A    ++G  +   DA L++ +P L   ++ SVG             + + +TP                   RRV E  E VK+G+W    G    G+    K++GIVG+GRIG A+A+R    F  PI Y++R     A  ++   Y N+  L      + +   LT+ETHH+   +    +  S I IN
Sbjct:    2 KPSVILYKALPDDLLQRLQEHFTVHQVANLSPQTV---EQNAAIFAEAEGLLGSNE-NVDAALLEKMPKLRATSTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCNLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFIN 234          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: GHRB_KLEP7 (Glyoxylate/hydroxypyruvate reductase B OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=ghrB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.058e-14
Identity = 62/235 (26.38%), Postives = 106/235 (45.11%), Query Frame = 3
Query:    6 KISVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVG--DTKCGADAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN--GHFELGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSHANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            K SV++   + + L Q L   F++ ++  ++ + +   +++ A     G   +    DA L++ +P L   ++ SVG             V + +TP                   RRV E  E VK+G+W    G    G+    K++GIVG+GRIG A+A+R    FG PI Y++R +   A  ++   Y ++  L      + +   L+EETHH+  +     +  S I IN
Sbjct:    2 KPSVILYKTLPDDLLQRLEEHFSVTQV--KNLRPETVSQHAEAFAQAEGLLGSSEKVDAALLEKMPKLRATSTVSVGYDNFDVEALNARRVLLMHTPTVLTETVADTVMALVLSTARRVVEVAERVKAGEWTKSIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFGMPILYNARRQHPQAEERFNARYCDLDTLLQEADFVCLILPLSEETHHLFGQAQFAKMKSSAIFIN 234          
The following BLAST results are available for this feature:
BLAST of FC869080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
GHRB_ERWT95.787e-1731.46Glyoxylate/hydroxypyruvate reductase B OS=Erwinia ... [more]
GHRB_PECCP2.872e-1627.66Glyoxylate/hydroxypyruvate reductase B OS=Pectobac... [more]
GHRB_ERWCT3.751e-1628.15Glyoxylate/hydroxypyruvate reductase B OS=Erwinia ... [more]
GHRB_ENT383.751e-1626.38Glyoxylate/hydroxypyruvate reductase B OS=Enteroba... [more]
Y752_STAHJ5.417e-1527.27Putative 2-hydroxyacid dehydrogenase SH0752 OS=Sta... [more]
GHRB_SHIBS7.075e-1527.85Glyoxylate/hydroxypyruvate reductase B OS=Shigella... [more]
GHRB_KLEP39.240e-1526.81Glyoxylate/hydroxypyruvate reductase B OS=Klebsiel... [more]
GHRB_SHIFL1.576e-1427.23Glyoxylate/hydroxypyruvate reductase B OS=Shigella... [more]
GHRB_ECOL61.576e-1427.85Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_KLEP72.058e-1426.38Glyoxylate/hydroxypyruvate reductase B OS=Klebsiel... [more]

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Properties
Property NameValue
Genbank descriptionC31008C10EF AbioticL1 Citrus clementina cDNA clone C31008C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869080 ID=FC869080; Name=FC869080; organism=Citrus clementina; type=EST; length=688bp
TGGAGAAAATATCTGTTCTTATGACGACTCCAATGTCAAATTACCTCGAA
CAAGAACTCGCAGCCCGCTTCACTCTCTTTAAACTCTGGACTCAATCTTG
CAAAAACAAATTTTTCCAAGAGAATTCAAGTGCCATCAGAGCTGTGGTAG
GTGACACAAAATGTGGGGCTGATGCAGAGCTGATAGATTCACTTCCCACC
TTGGAGATAGTGGCAAGTTACAGTGTGGGATTGGACAAGATTGACTTGGA
CAAGTGTAAAGACAAGGCTGTTAGAGTTACTAACACTCCTGATGTGTTGA
CTGATGACGTGGCAGACTTGGCTGTTGGATTGGTTTTGGCTGTTCTGAGA
AGGGTTTGTGAGTTTGATGAGTTTGTTAAGTCTGGCAAGTGGAAAAATGG
TCACTTCGAATTGGGTTCTAAGTTCAGTGGTAAATCTGTCGGCATTGTTG
GGCTGGGCAGGATTGGAACAGCAATTGCAAAGAGAGTAGAAGCTTTTGGT
TGCCCAATTAGTTATCACTCCAGGTCGGAGAAATCACATGCAAATTATAA
ATACTACACAAACATTATTGACTTAGCCTCCAATTGTCAAATCCTCATTG
TGGCTTGCTCTCTAACAGAGGAAACTCACCACATTGTCAATCGCAAAGTC
ATTGATGCATTANGTCCCAGTGGCATTCTCATCAACAT
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