FC869080

Overview
NameFC869080
Unique NameFC869080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: GHRB_YERPS (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pseudotuberculosis GN=ghrB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.822e-14
Identity = 61/235 (25.96%), Postives = 103/235 (43.83%), Query Frame = 3
Query:    6 KISVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGA--DAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN--GHFELGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSHANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            K S+++   +   L Q LA  FT+      +  N+   E  +A++   G    G   D + +   P L   ++ SVG             + + +TP                   RRV E  E VK+G+W+   G    G     K++GI+G+GRIG A+A+R    F  P+ Y SR     A  ++   + ++  L +    L +   +TE+T+H++ R+ +  +  S ILIN
Sbjct:    2 KPSIVLYKSIPTDLHQRLAQHFTVNSFDGLTPDNQ--PELLAALQQAEGLIGSGGKIDQDFLQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILIN 234          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: GHRB_YERPP (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis (strain Pestoides F) GN=ghrB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.822e-14
Identity = 61/235 (25.96%), Postives = 103/235 (43.83%), Query Frame = 3
Query:    6 KISVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGA--DAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN--GHFELGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSHANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            K S+++   +   L Q LA  FT+      +  N+   E  +A++   G    G   D + +   P L   ++ SVG             + + +TP                   RRV E  E VK+G+W+   G    G     K++GI+G+GRIG A+A+R    F  P+ Y SR     A  ++   + ++  L +    L +   +TE+T+H++ R+ +  +  S ILIN
Sbjct:    2 KPSIVLYKSIPTDLHQRLAQHFTVNSFDGLTPDNQ--PELLAALQQAEGLIGSGGKIDQDFLQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILIN 234          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: GHRB_YERPN (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=ghrB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.822e-14
Identity = 61/235 (25.96%), Postives = 103/235 (43.83%), Query Frame = 3
Query:    6 KISVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGA--DAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN--GHFELGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSHANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            K S+++   +   L Q LA  FT+      +  N+   E  +A++   G    G   D + +   P L   ++ SVG             + + +TP                   RRV E  E VK+G+W+   G    G     K++GI+G+GRIG A+A+R    F  P+ Y SR     A  ++   + ++  L +    L +   +TE+T+H++ R+ +  +  S ILIN
Sbjct:    2 KPSIVLYKSIPTDLHQRLAQHFTVNSFDGLTPDNQ--PELLAALQQAEGLIGSGGKIDQDFLQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILIN 234          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: GHRB_YERPG (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis bv. Antiqua (strain Angola) GN=ghrB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.822e-14
Identity = 61/235 (25.96%), Postives = 103/235 (43.83%), Query Frame = 3
Query:    6 KISVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGA--DAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN--GHFELGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSHANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            K S+++   +   L Q LA  FT+      +  N+   E  +A++   G    G   D + +   P L   ++ SVG             + + +TP                   RRV E  E VK+G+W+   G    G     K++GI+G+GRIG A+A+R    F  P+ Y SR     A  ++   + ++  L +    L +   +TE+T+H++ R+ +  +  S ILIN
Sbjct:    2 KPSIVLYKSIPTDLHQRLAQHFTVNSFDGLTPDNQ--PELLAALQQAEGLIGSGGKIDQDFLQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILIN 234          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: GHRB_YERPE (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis GN=ghrB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.822e-14
Identity = 61/235 (25.96%), Postives = 103/235 (43.83%), Query Frame = 3
Query:    6 KISVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGA--DAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN--GHFELGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSHANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            K S+++   +   L Q LA  FT+      +  N+   E  +A++   G    G   D + +   P L   ++ SVG             + + +TP                   RRV E  E VK+G+W+   G    G     K++GI+G+GRIG A+A+R    F  P+ Y SR     A  ++   + ++  L +    L +   +TE+T+H++ R+ +  +  S ILIN
Sbjct:    2 KPSIVLYKSIPTDLHQRLAQHFTVNSFDGLTPDNQ--PELLAALQQAEGLIGSGGKIDQDFLQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILIN 234          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: GHRB_YERPB (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=ghrB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.822e-14
Identity = 61/235 (25.96%), Postives = 103/235 (43.83%), Query Frame = 3
Query:    6 KISVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGA--DAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN--GHFELGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSHANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            K S+++   +   L Q LA  FT+      +  N+   E  +A++   G    G   D + +   P L   ++ SVG             + + +TP                   RRV E  E VK+G+W+   G    G     K++GI+G+GRIG A+A+R    F  P+ Y SR     A  ++   + ++  L +    L +   +TE+T+H++ R+ +  +  S ILIN
Sbjct:    2 KPSIVLYKSIPTDLHQRLAQHFTVNSFDGLTPDNQ--PELLAALQQAEGLIGSGGKIDQDFLQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILIN 234          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: GHRB_YERPA (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=ghrB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.822e-14
Identity = 61/235 (25.96%), Postives = 103/235 (43.83%), Query Frame = 3
Query:    6 KISVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGA--DAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN--GHFELGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSHANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            K S+++   +   L Q LA  FT+      +  N+   E  +A++   G    G   D + +   P L   ++ SVG             + + +TP                   RRV E  E VK+G+W+   G    G     K++GI+G+GRIG A+A+R    F  P+ Y SR     A  ++   + ++  L +    L +   +TE+T+H++ R+ +  +  S ILIN
Sbjct:    2 KPSIVLYKSIPTDLHQRLAQHFTVNSFDGLTPDNQ--PELLAALQQAEGLIGSGGKIDQDFLQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILIN 234          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: GHRB_YERP3 (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=ghrB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.822e-14
Identity = 61/235 (25.96%), Postives = 103/235 (43.83%), Query Frame = 3
Query:    6 KISVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVGDTKCGA--DAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN--GHFELGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSHANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            K S+++   +   L Q LA  FT+      +  N+   E  +A++   G    G   D + +   P L   ++ SVG             + + +TP                   RRV E  E VK+G+W+   G    G     K++GI+G+GRIG A+A+R    F  P+ Y SR     A  ++   + ++  L +    L +   +TE+T+H++ R+ +  +  S ILIN
Sbjct:    2 KPSIVLYKSIPTDLHQRLAQHFTVNSFDGLTPDNQ--PELLAALQQAEGLIGSGGKIDQDFLQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILIN 234          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: GHRB_ECO7I (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.822e-14
Identity = 65/237 (27.43%), Postives = 106/237 (44.73%), Query Frame = 3
Query:    6 KISVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRA----VVGDTKCGADAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN--GHFELGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSHANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            K SV++   + + L Q L   FT+ ++   S +     E ++AI A    ++G  +   DA L++ +P L   ++ SVG             + + +TP                   RRV E  E VK+G+W    G    G+    K++GIVG+GRIG A+A+R    F  PI Y++R     A  ++   Y ++  L      + +   LT+ETHH+   +    +  S I IN
Sbjct:    2 KPSVILYKALPDDLLQRLQEHFTVHQVANLSPQTV---EQNAAIFAEAEGLLGSNE-NVDAVLLEKMPKLRATSTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFIN 234          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: Y1879_STAES (Putative 2-hydroxyacid dehydrogenase SE_1879 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_1879 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.022e-13
Identity = 50/187 (26.74%), Postives = 80/187 (42.78%), Query Frame = 3
Query:  141 AVVGDTKCGADAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKNGH--FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISY---HSRSEKSHANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            A+V       D ++IDS   L+I+A+Y  G             + VTNTP                   RR+ E D   ++  +      F  G + SGK++GI+GLG IG A+AKR  AF   + Y   H + EK       Y ++  L  N   + +  +     HH+++ +  + +  +  LIN
Sbjct:   47 ALVSLLSTSVDKDIIDSANNLKIIANYGAGFNNIDVEYARQQNIDVTNTPHASTNATADLTIGLILSVARRIVEGDHLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGGAVAKRARAFDMDVLYTGPHRKEEKERDIGAKYVDLDTLLKNADFITINAAYNPSLHHMIDTEQFNKMKSTAYLIN 233          
The following BLAST results are available for this feature:
BLAST of FC869080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
GHRB_YERPS7.822e-1425.96Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPP7.822e-1425.96Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPN7.822e-1425.96Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPG7.822e-1425.96Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPE7.822e-1425.96Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPB7.822e-1425.96Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPA7.822e-1425.96Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERP37.822e-1425.96Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_ECO7I7.822e-1427.43Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
Y1879_STAES1.022e-1326.74Putative 2-hydroxyacid dehydrogenase SE_1879 OS=St... [more]

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Properties
Property NameValue
Genbank descriptionC31008C10EF AbioticL1 Citrus clementina cDNA clone C31008C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869080 ID=FC869080; Name=FC869080; organism=Citrus clementina; type=EST; length=688bp
TGGAGAAAATATCTGTTCTTATGACGACTCCAATGTCAAATTACCTCGAA
CAAGAACTCGCAGCCCGCTTCACTCTCTTTAAACTCTGGACTCAATCTTG
CAAAAACAAATTTTTCCAAGAGAATTCAAGTGCCATCAGAGCTGTGGTAG
GTGACACAAAATGTGGGGCTGATGCAGAGCTGATAGATTCACTTCCCACC
TTGGAGATAGTGGCAAGTTACAGTGTGGGATTGGACAAGATTGACTTGGA
CAAGTGTAAAGACAAGGCTGTTAGAGTTACTAACACTCCTGATGTGTTGA
CTGATGACGTGGCAGACTTGGCTGTTGGATTGGTTTTGGCTGTTCTGAGA
AGGGTTTGTGAGTTTGATGAGTTTGTTAAGTCTGGCAAGTGGAAAAATGG
TCACTTCGAATTGGGTTCTAAGTTCAGTGGTAAATCTGTCGGCATTGTTG
GGCTGGGCAGGATTGGAACAGCAATTGCAAAGAGAGTAGAAGCTTTTGGT
TGCCCAATTAGTTATCACTCCAGGTCGGAGAAATCACATGCAAATTATAA
ATACTACACAAACATTATTGACTTAGCCTCCAATTGTCAAATCCTCATTG
TGGCTTGCTCTCTAACAGAGGAAACTCACCACATTGTCAATCGCAAAGTC
ATTGATGCATTANGTCCCAGTGGCATTCTCATCAACAT
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