FC869080

Overview
NameFC869080
Unique NameFC869080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: Y1888_STAEQ (Putative 2-hydroxyacid dehydrogenase SERP1888 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP1888 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 49/187 (26.20%), Postives = 80/187 (42.78%), Query Frame = 3
Query:  141 AVVGDTKCGADAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKNGH--FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISY---HSRSEKSHANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            A++       D ++IDS   L+I+A+Y  G             + VTNTP                   RR+ E D   ++  +      F  G + SGK++GI+GLG IG A+AKR  AF   + Y   H + EK       Y ++  L  N   + +  +     HH+++ +  + +  +  LIN
Sbjct:   47 ALISLLSTSVDKDIIDSANNLKIIANYGAGFNNIDVEYARQQNIDVTNTPHASTNATADLTIGLILSVARRIVEGDHLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGGAVAKRARAFDMDVLYTGPHRKEEKERDIGAKYVDLDTLLKNADFITINAAYNPSLHHMIDTEQFNKMKSTAYLIN 233          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: GHRB_ECOHS (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O9:H4 (strain HS) GN=ghrB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 65/237 (27.43%), Postives = 105/237 (44.30%), Query Frame = 3
Query:    6 KISVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRA----VVGDTKCGADAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN--GHFELGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSHANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            K SV++   + + L Q L   FT+ ++   S +     E ++AI A    ++G  +   DA L++ +P L   ++ SVG             + + +TP                   RRV E  E VK+G W    G    G+    K++GIVG+GRIG A+A+R    F  PI Y++R     A  ++   Y ++  L      + +   LT+ETHH+   +    +  S I IN
Sbjct:    2 KPSVILYKALPDDLLQRLQEHFTVHQVANLSPQTV---EQNAAIFAEAEGLLGSNE-NVDAALLEKMPKLRATSTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGGWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFIN 234          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: GHRB_ECOLU (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.743e-13
Identity = 64/235 (27.23%), Postives = 101/235 (42.98%), Query Frame = 3
Query:    6 KISVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVG--DTKCGADAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN--GHFELGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSHANYKYYTNIIDLASNCQILIVAC---SLTEETHHIVNRKVIDALXPSGILIN 686
            K SV++   + + L Q L   FT+ ++   S +    ++N++      G   +    DA L+  +P L   ++ SVG             + + +TP                   RRV E  E VK+G+W    G    G+    K++GIVG+GRIG A+A+R    F  PI Y++R     A  ++     DL S  Q     C    LT+ET+H+   +    +  S I IN
Sbjct:    2 KPSVILYKALPDDLLQRLQEHFTVHQVANLSPQT--IEQNAAIFAEAEGLLGSNENVDAALLGKMPKLRATSTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDSLLQESDFVCLILPLTDETYHLFGAEQFGKMKSSAIFIN 234          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: Y606_STAS1 (Putative 2-hydroxyacid dehydrogenase SSP0606 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP0606 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 48/187 (25.67%), Postives = 82/187 (43.85%), Query Frame = 3
Query:  141 AVVGDTKCGADAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKNGH--FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISY---HSRSEKSHANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            A++       D E+ID+   L+I+ +Y  G             + VTNTP                   RR+ E D+  ++  +      F  G + SGK++GI+GLG IG+A+A+R +AF   I Y   H + +K       Y ++  L  N   + +  +     HH +++   + + P+  LIN
Sbjct:   48 ALISLLSTSVDKEVIDAANNLKIITNYGAGFNNVDIDYARQQNIDVTNTPKASTNSTAELTFALVLAVARRIPEGDKLCRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVARRAKAFDMNILYTGPHQKVDKEREIGAKYVDLETLLKNADFVTINAAYNPSLHHQIDKAQFEMMKPTSYLIN 234          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: GHRB_ECOLI (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli (strain K12) GN=ghrB PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 64/237 (27.00%), Postives = 106/237 (44.73%), Query Frame = 3
Query:    6 KISVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRA----VVGDTKCGADAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN--GHFELGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSHANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            K SV++   + + L Q L   FT+ ++   S +     E ++AI A    ++G  +   +A L++ +P L   ++ SVG             + + +TP                   RRV E  E VK+G+W    G    G+    K++GIVG+GRIG A+A+R    F  PI Y++R     A  ++   Y ++  L      + +   LT+ETHH+   +    +  S I IN
Sbjct:    2 KPSVILYKALPDDLLQRLQEHFTVHQVANLSPQTV---EQNAAIFAEAEGLLGSNE-NVNAALLEKMPKLRATSTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFIN 234          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: GHRB_ECOL5 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 64/237 (27.00%), Postives = 106/237 (44.73%), Query Frame = 3
Query:    6 KISVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRA----VVGDTKCGADAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN--GHFELGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSHANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            K SV++   + + L Q L   FT+ ++   S +     E ++AI A    ++G  +   DA L++ +P L   ++ SVG             + + +TP                   RRV E  E VK+G+W    G    G+    K++GIVG+GRIG A+A+R    F  PI Y++R     A  ++   Y ++  L      + +   LT+ET+H+   +    +  S I IN
Sbjct:    2 KPSVILYKALPDDLLQRLQEHFTVHQVANLSPQTV---EQNAAIFAEAEGLLGSNE-NVDAALLEKMPKLRATSTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETYHLFGAEQFGKMKSSAIFIN 234          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: GHRB_ECODH (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli (strain K12 / DH10B) GN=ghrB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 64/237 (27.00%), Postives = 106/237 (44.73%), Query Frame = 3
Query:    6 KISVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRA----VVGDTKCGADAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN--GHFELGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSHANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            K SV++   + + L Q L   FT+ ++   S +     E ++AI A    ++G  +   +A L++ +P L   ++ SVG             + + +TP                   RRV E  E VK+G+W    G    G+    K++GIVG+GRIG A+A+R    F  PI Y++R     A  ++   Y ++  L      + +   LT+ETHH+   +    +  S I IN
Sbjct:    2 KPSVILYKALPDDLLQRLQEHFTVHQVANLSPQTV---EQNAAIFAEAEGLLGSNE-NVNAALLEKMPKLRATSTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFIN 234          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: GHRB_ECOBW (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli (strain K12 / BW2952) GN=ghrB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 64/237 (27.00%), Postives = 106/237 (44.73%), Query Frame = 3
Query:    6 KISVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRA----VVGDTKCGADAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN--GHFELGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSHANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            K SV++   + + L Q L   FT+ ++   S +     E ++AI A    ++G  +   +A L++ +P L   ++ SVG             + + +TP                   RRV E  E VK+G+W    G    G+    K++GIVG+GRIG A+A+R    F  PI Y++R     A  ++   Y ++  L      + +   LT+ETHH+   +    +  S I IN
Sbjct:    2 KPSVILYKALPDDLLQRLQEHFTVHQVANLSPQTV---EQNAAIFAEAEGLLGSNE-NVNAALLEKMPKLRATSTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFIN 234          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: SERA_METTH (D-3-phosphoglycerate dehydrogenase OS=Methanobacterium thermoautotrophicum GN=serA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.972e-13
Identity = 46/185 (24.86%), Postives = 81/185 (43.78%), Query Frame = 3
Query:  141 AVVGDTKCGADAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISYHSRSEKSHANYKYYTNIIDLAS---NCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            A+V  ++     E+I++ P L+I+A   VG             + V N P                   R++   D  VK GKW+   F +G + +GK++GI+G+GRIG+ +  R +AFG  I  +       A  +    + DL +      I+ +   LT ET H+++      +  +  ++N
Sbjct:   46 AIVVRSRTKVTREVIEAAPRLKIIARAGVGVDNVDVKAATDRGIMVINAPESTSITVAEHSIGLMLALARKIAIADRSVKEGKWEKNRF-MGIELNGKTLGIIGMGRIGSQVVVRTKAFGMDIMVYDPYISKEAAEEMGVTVTDLETLLRESDIVTIHVPLTPETRHLISEDEFKLMKDTAFIVN 229          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: GHRB_SERP5 (Glyoxylate/hydroxypyruvate reductase B OS=Serratia proteamaculans (strain 568) GN=ghrB PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.972e-13
Identity = 51/178 (28.65%), Postives = 79/178 (44.38%), Query Frame = 3
Query:  171 DAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN--GHFELGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSHANYKYYTNIIDL---ASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            D   +   P L   ++ SVG             V + +TP                   RRV E  E VK+G+W+   G    G     K++GI+G+GRIG A+A+R    FG P+ Y++R     A  ++     DL    +    + +   LT+ET H+++R  +  +  SGILIN
Sbjct:   57 DEAFLQQTPKLRAASTISVGYDNFDVDALNAHNVLLMHTPTVLTETVADTIMSLVLATARRVVEVAERVKAGEWQGSIGADWFGVDVHHKTIGILGMGRIGLALAQRAHFGFGMPVLYNARRTHEEAEQRFNARRCDLDTLLAESDFICITLPLTDETFHMISRDQLAKMKKSGILIN 234          
The following BLAST results are available for this feature:
BLAST of FC869080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
Y1888_STAEQ1.334e-1326.20Putative 2-hydroxyacid dehydrogenase SERP1888 OS=S... [more]
GHRB_ECOHS1.334e-1327.43Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECOLU1.743e-1327.23Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
Y606_STAS12.276e-1325.67Putative 2-hydroxyacid dehydrogenase SSP0606 OS=St... [more]
GHRB_ECOLI2.276e-1327.00Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECOL52.276e-1327.00Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECODH2.276e-1327.00Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECOBW2.276e-1327.00Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
SERA_METTH2.972e-1324.86D-3-phosphoglycerate dehydrogenase OS=Methanobacte... [more]
GHRB_SERP52.972e-1328.65Glyoxylate/hydroxypyruvate reductase B OS=Serratia... [more]

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Properties
Property NameValue
Genbank descriptionC31008C10EF AbioticL1 Citrus clementina cDNA clone C31008C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869080 ID=FC869080; Name=FC869080; organism=Citrus clementina; type=EST; length=688bp
TGGAGAAAATATCTGTTCTTATGACGACTCCAATGTCAAATTACCTCGAA
CAAGAACTCGCAGCCCGCTTCACTCTCTTTAAACTCTGGACTCAATCTTG
CAAAAACAAATTTTTCCAAGAGAATTCAAGTGCCATCAGAGCTGTGGTAG
GTGACACAAAATGTGGGGCTGATGCAGAGCTGATAGATTCACTTCCCACC
TTGGAGATAGTGGCAAGTTACAGTGTGGGATTGGACAAGATTGACTTGGA
CAAGTGTAAAGACAAGGCTGTTAGAGTTACTAACACTCCTGATGTGTTGA
CTGATGACGTGGCAGACTTGGCTGTTGGATTGGTTTTGGCTGTTCTGAGA
AGGGTTTGTGAGTTTGATGAGTTTGTTAAGTCTGGCAAGTGGAAAAATGG
TCACTTCGAATTGGGTTCTAAGTTCAGTGGTAAATCTGTCGGCATTGTTG
GGCTGGGCAGGATTGGAACAGCAATTGCAAAGAGAGTAGAAGCTTTTGGT
TGCCCAATTAGTTATCACTCCAGGTCGGAGAAATCACATGCAAATTATAA
ATACTACACAAACATTATTGACTTAGCCTCCAATTGTCAAATCCTCATTG
TGGCTTGCTCTCTAACAGAGGAAACTCACCACATTGTCAATCGCAAAGTC
ATTGATGCATTANGTCCCAGTGGCATTCTCATCAACAT
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