FC869080

Overview
NameFC869080
Unique NameFC869080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: TKRA_BACSU (Probable 2-ketogluconate reductase OS=Bacillus subtilis GN=yvcT PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 48/176 (27.27%), Postives = 77/176 (43.75%), Query Frame = 3
Query:  177 ELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKNGHFE--LGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSHANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            EL++  P L++V++ SVG             V  T+TP                   RRV E D FV++GKW     E   G     +++GI+G+GRIG   A+R +  F   + YH+R  K          Y  +  L      +++   LT+ET+H++  +    +  S I +N
Sbjct:   62 ELLEHAPKLKVVSNQSVGYDNFDIEAMKERGVVGTHTPYTLDDTVADLAFSLILSSARRVAELDRFVRAGKWGTVEEEALFGIDVHHQTLGIIGMGRIGEQAARRAKFGFDMEVLYHNRHRKQETEDSIGVKYAELDTLLEQSDFILLITPLTDETYHMIGEREFKLMKNSAIFVN 237          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: GHRB_SHIDS (Glyoxylate/hydroxypyruvate reductase B OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=ghrB PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.622e-13
Identity = 61/235 (25.96%), Postives = 102/235 (43.40%), Query Frame = 3
Query:    6 KISVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVG--DTKCGADAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN--GHFELGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSHANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            K SV++   + + L Q L   FT+ ++   S +     +N++      G   +    DA L++ +P L   ++ SVG             + + +TP                   RRV E  E VK+G+W    G    G+    K++GIVG+GRIG A+A+R    F  PI Y++R     A  ++   Y ++  L      + +   LT+ET+H+   +    +  S I IN
Sbjct:    2 KPSVILYKALPDDLLQRLQEHFTVHQVANLSPQT--VDQNAAIFAEAEGLLGSNENVDAALLEKMPRLRATSTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVYHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETYHLFGAEQFAKMKSSAIFIN 234          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: GHRB_CITK8 (Glyoxylate/hydroxypyruvate reductase B OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=ghrB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.622e-13
Identity = 61/235 (25.96%), Postives = 102/235 (43.40%), Query Frame = 3
Query:    6 KISVLMTTPMSNYLEQELAARFTLFKLWTQSCKNKFFQENSSAIRAVVG--DTKCGADAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN--GHFELGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSHANYKYYTNIIDLASNCQILIVAC---SLTEETHHIVNRKVIDALXPSGILIN 686
            K S+++   + + L   L   FT+ ++   + + +  ++++ A  +  G   +    ++ L++ +P L   ++ SVG            +V + +TP                   RRV E  E VK G+W    G    G+    K++GIVG+GRIG A+A+R    F  PI Y++R     A  ++     DL +  Q     C    LTEETHH+        +  S I IN
Sbjct:    2 KPSIILYKALPDDLLHRLEEHFTVTQV--PNLRPETVEQHAQAFASAEGLLGSSETVNSALLEKMPKLRAASTVSVGYDNFDVAALNARSVLLMHTPTVLTETVADTVMALVLSTARRVVEVAERVKVGEWTKSIGPDWFGTDVHHKTLGIVGMGRIGLALAQRAHFGFNMPILYNARRHHPEAEERFNARYCDLDTLLQAADFVCLILPLTEETHHLFGAAQFAKMKSSAIFIN 234          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: Y2577_STAA8 (Putative 2-hydroxyacid dehydrogenase SAOUHSC_02577 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_02577 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.129e-12
Identity = 46/187 (24.60%), Postives = 83/187 (44.39%), Query Frame = 3
Query:  141 AVVGDTKCGADAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKNGH--FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISY---HSRSEKSHANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            A++       D ++ID+   L+I+A+Y  G            ++ VTNTP                   RR+ E D+  ++  +      F  G + SGK++GI+GLG IG+A+A+R  AF   + Y   + + EK       Y ++  L  N   + +  +   + HH+++ +    +  +  LIN
Sbjct:   47 ALISLLSTNVDKDVIDAGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTAYLIN 233          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: Y2389_STAAR (Putative 2-hydroxyacid dehydrogenase SAR2389 OS=Staphylococcus aureus (strain MRSA252) GN=SAR2389 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.129e-12
Identity = 46/187 (24.60%), Postives = 83/187 (44.39%), Query Frame = 3
Query:  141 AVVGDTKCGADAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKNGH--FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISY---HSRSEKSHANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            A++       D ++ID+   L+I+A+Y  G            ++ VTNTP                   RR+ E D+  ++  +      F  G + SGK++GI+GLG IG+A+A+R  AF   + Y   + + EK       Y ++  L  N   + +  +   + HH+++ +    +  +  LIN
Sbjct:   47 ALISLLSTNVDKDVIDAGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTAYLIN 233          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: Y2296_STAAC (Putative 2-hydroxyacid dehydrogenase SACOL2296 OS=Staphylococcus aureus (strain COL) GN=SACOL2296 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.129e-12
Identity = 46/187 (24.60%), Postives = 83/187 (44.39%), Query Frame = 3
Query:  141 AVVGDTKCGADAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKNGH--FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISY---HSRSEKSHANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            A++       D ++ID+   L+I+A+Y  G            ++ VTNTP                   RR+ E D+  ++  +      F  G + SGK++GI+GLG IG+A+A+R  AF   + Y   + + EK       Y ++  L  N   + +  +   + HH+++ +    +  +  LIN
Sbjct:   47 ALISLLSTNVDKDVIDAGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTAYLIN 233          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: Y2254_STAA3 (Putative 2-hydroxyacid dehydrogenase SAUSA300_2254 OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_2254 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.129e-12
Identity = 46/187 (24.60%), Postives = 83/187 (44.39%), Query Frame = 3
Query:  141 AVVGDTKCGADAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKNGH--FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISY---HSRSEKSHANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            A++       D ++ID+   L+I+A+Y  G            ++ VTNTP                   RR+ E D+  ++  +      F  G + SGK++GI+GLG IG+A+A+R  AF   + Y   + + EK       Y ++  L  N   + +  +   + HH+++ +    +  +  LIN
Sbjct:   47 ALISLLSTNVDKDVIDAGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTAYLIN 233          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: Y2224_STAAW (Putative 2-hydroxyacid dehydrogenase MW2224 OS=Staphylococcus aureus (strain MW2) GN=MW2224 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.129e-12
Identity = 46/187 (24.60%), Postives = 83/187 (44.39%), Query Frame = 3
Query:  141 AVVGDTKCGADAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKNGH--FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISY---HSRSEKSHANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            A++       D ++ID+   L+I+A+Y  G            ++ VTNTP                   RR+ E D+  ++  +      F  G + SGK++GI+GLG IG+A+A+R  AF   + Y   + + EK       Y ++  L  N   + +  +   + HH+++ +    +  +  LIN
Sbjct:   47 ALISLLSTNVDKDVIDAGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTAYLIN 233          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: Y2196_STAAS (Putative 2-hydroxyacid dehydrogenase SAS2196 OS=Staphylococcus aureus (strain MSSA476) GN=SAS2196 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.129e-12
Identity = 46/187 (24.60%), Postives = 83/187 (44.39%), Query Frame = 3
Query:  141 AVVGDTKCGADAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKNGH--FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISY---HSRSEKSHANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            A++       D ++ID+   L+I+A+Y  G            ++ VTNTP                   RR+ E D+  ++  +      F  G + SGK++GI+GLG IG+A+A+R  AF   + Y   + + EK       Y ++  L  N   + +  +   + HH+++ +    +  +  LIN
Sbjct:   47 ALISLLSTNVDKDVIDAGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTAYLIN 233          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: Y2178_STAAB (Putative 2-hydroxyacid dehydrogenase SAB2178 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB2178 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.129e-12
Identity = 46/187 (24.60%), Postives = 83/187 (44.39%), Query Frame = 3
Query:  141 AVVGDTKCGADAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKNGH--FELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISY---HSRSEKSHANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            A++       D ++ID+   L+I+A+Y  G            ++ VTNTP                   RR+ E D+  ++  +      F  G + SGK++GI+GLG IG+A+A+R  AF   + Y   + + EK       Y ++  L  N   + +  +   + HH+++ +    +  +  LIN
Sbjct:   47 ALISLLSTNVDKDVIDAGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAIARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTAYLIN 233          
The following BLAST results are available for this feature:
BLAST of FC869080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
TKRA_BACSU3.882e-1327.27Probable 2-ketogluconate reductase OS=Bacillus sub... [more]
GHRB_SHIDS6.622e-1325.96Glyoxylate/hydroxypyruvate reductase B OS=Shigella... [more]
GHRB_CITK86.622e-1325.96Glyoxylate/hydroxypyruvate reductase B OS=Citrobac... [more]
Y2577_STAA81.129e-1224.60Putative 2-hydroxyacid dehydrogenase SAOUHSC_02577... [more]
Y2389_STAAR1.129e-1224.60Putative 2-hydroxyacid dehydrogenase SAR2389 OS=St... [more]
Y2296_STAAC1.129e-1224.60Putative 2-hydroxyacid dehydrogenase SACOL2296 OS=... [more]
Y2254_STAA31.129e-1224.60Putative 2-hydroxyacid dehydrogenase SAUSA300_2254... [more]
Y2224_STAAW1.129e-1224.60Putative 2-hydroxyacid dehydrogenase MW2224 OS=Sta... [more]
Y2196_STAAS1.129e-1224.60Putative 2-hydroxyacid dehydrogenase SAS2196 OS=St... [more]
Y2178_STAAB1.129e-1224.60Putative 2-hydroxyacid dehydrogenase SAB2178 OS=St... [more]

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Properties
Property NameValue
Genbank descriptionC31008C10EF AbioticL1 Citrus clementina cDNA clone C31008C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869080 ID=FC869080; Name=FC869080; organism=Citrus clementina; type=EST; length=688bp
TGGAGAAAATATCTGTTCTTATGACGACTCCAATGTCAAATTACCTCGAA
CAAGAACTCGCAGCCCGCTTCACTCTCTTTAAACTCTGGACTCAATCTTG
CAAAAACAAATTTTTCCAAGAGAATTCAAGTGCCATCAGAGCTGTGGTAG
GTGACACAAAATGTGGGGCTGATGCAGAGCTGATAGATTCACTTCCCACC
TTGGAGATAGTGGCAAGTTACAGTGTGGGATTGGACAAGATTGACTTGGA
CAAGTGTAAAGACAAGGCTGTTAGAGTTACTAACACTCCTGATGTGTTGA
CTGATGACGTGGCAGACTTGGCTGTTGGATTGGTTTTGGCTGTTCTGAGA
AGGGTTTGTGAGTTTGATGAGTTTGTTAAGTCTGGCAAGTGGAAAAATGG
TCACTTCGAATTGGGTTCTAAGTTCAGTGGTAAATCTGTCGGCATTGTTG
GGCTGGGCAGGATTGGAACAGCAATTGCAAAGAGAGTAGAAGCTTTTGGT
TGCCCAATTAGTTATCACTCCAGGTCGGAGAAATCACATGCAAATTATAA
ATACTACACAAACATTATTGACTTAGCCTCCAATTGTCAAATCCTCATTG
TGGCTTGCTCTCTAACAGAGGAAACTCACCACATTGTCAATCGCAAAGTC
ATTGATGCATTANGTCCCAGTGGCATTCTCATCAACAT
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