FC869080

Overview
NameFC869080
Unique NameFC869080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: GHRB_SALNS (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella newport (strain SL254) GN=ghrB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 48/175 (27.43%), Postives = 73/175 (41.71%), Query Frame = 3
Query:  180 LIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN--GHFELGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSHANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            L++ +P L   ++ SVG             + + +TP                   RRV +  E VK+G+W    G    G     K++GIVG+GRIG A+A+R    F  P+ YH+R     A  ++   Y ++  L      + V   LT ET H+        +  S I IN
Sbjct:   60 LLEKMPALRAASTISVGYDNVEVDALTARKIVLMHTPAVLTETVADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFIN 234          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: GHRB_SALHS (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella heidelberg (strain SL476) GN=ghrB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 48/175 (27.43%), Postives = 73/175 (41.71%), Query Frame = 3
Query:  180 LIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN--GHFELGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSHANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            L++ +P L   ++ SVG             + + +TP                   RRV +  E VK+G+W    G    G     K++GIVG+GRIG A+A+R    F  P+ YH+R     A  ++   Y ++  L      + V   LT ET H+        +  S I IN
Sbjct:   60 LLEKMPALRAASTISVGYDNVEVDALTARKIVLMHTPAVLTETVADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFIN 234          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: GHRB_SALG2 (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=ghrB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 48/175 (27.43%), Postives = 73/175 (41.71%), Query Frame = 3
Query:  180 LIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN--GHFELGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSHANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            L++ +P L   ++ SVG             + + +TP                   RRV +  E VK+G+W    G    G     K++GIVG+GRIG A+A+R    F  P+ YH+R     A  ++   Y ++  L      + V   LT ET H+        +  S I IN
Sbjct:   60 LLEKMPALRAASTISVGYDNVEVDALTARKIVLMHTPAVLTETVADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFIN 234          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: GHRB_SALEP (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella enteritidis PT4 (strain P125109) GN=ghrB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 48/175 (27.43%), Postives = 73/175 (41.71%), Query Frame = 3
Query:  180 LIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN--GHFELGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSHANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            L++ +P L   ++ SVG             + + +TP                   RRV +  E VK+G+W    G    G     K++GIVG+GRIG A+A+R    F  P+ YH+R     A  ++   Y ++  L      + V   LT ET H+        +  S I IN
Sbjct:   60 LLEKMPALRAASTISVGYDNVEVDALTARKIVLMHTPAVLTETVADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFIN 234          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: GHRB_SALDC (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella dublin (strain CT_02021853) GN=ghrB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 48/175 (27.43%), Postives = 73/175 (41.71%), Query Frame = 3
Query:  180 LIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN--GHFELGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSHANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            L++ +P L   ++ SVG             + + +TP                   RRV +  E VK+G+W    G    G     K++GIVG+GRIG A+A+R    F  P+ YH+R     A  ++   Y ++  L      + V   LT ET H+        +  S I IN
Sbjct:   60 LLEKMPALRAASTISVGYDNVEVDALTARKIVLMHTPAVLTETVADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFIN 234          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: GHRB_SALCH (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella choleraesuis GN=ghrB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 48/175 (27.43%), Postives = 73/175 (41.71%), Query Frame = 3
Query:  180 LIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN--GHFELGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSHANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            L++ +P L   ++ SVG             + + +TP                   RRV +  E VK+G+W    G    G     K++GIVG+GRIG A+A+R    F  P+ YH+R     A  ++   Y ++  L      + V   LT ET H+        +  S I IN
Sbjct:   60 LLEKMPALRAASTISVGYDNVEVDALTARKIVLMHTPTVLTETVADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFIN 234          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: GHRB_SALA4 (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella agona (strain SL483) GN=ghrB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 48/175 (27.43%), Postives = 73/175 (41.71%), Query Frame = 3
Query:  180 LIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKN--GHFELGSKFSGKSVGIVGLGRIGTAIAKRVE-AFGCPISYHSRSEKSHANYKY---YTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            L++ +P L   ++ SVG             + + +TP                   RRV +  E VK+G+W    G    G     K++GIVG+GRIG A+A+R    F  P+ YH+R     A  ++   Y ++  L      + V   LT ET H+        +  S I IN
Sbjct:   60 LLEKMPALRAASTISVGYDNVEVDALTARKIVLMHTPAVLTETVADTVMALMLTTARRVVDVAERVKAGEWTESIGPAWFGIDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFIN 234          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: DHGY_HYPME (Glycerate dehydrogenase OS=Hyphomicrobium methylovorum PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 47/178 (26.40%), Postives = 78/178 (43.82%), Query Frame = 3
Query:  177 ELIDSLP-TLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKNGH-FEL-GSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPISY---HSRSEKSHANYK--YYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            E+ID +P  ++ +++YS+G             ++V N P                   RR  E ++ +++  W      EL G K   K++GI G G IG A+AKR + F   I Y   H  S    A+Y+  ++ ++  L S  Q   +    T ET +  N+  I +L    I++N
Sbjct:   61 EVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVN 238          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: SERA_MYCTU (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium tuberculosis GN=serA PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 47/176 (26.70%), Postives = 78/176 (44.32%), Query Frame = 3
Query:  171 DAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPI----SYHSRSEKSHANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            DAE++ + P L+IVA   VG             V V N P                   R++   D  ++   WK   F  G++  GK+VG+VGLGRIG  +A+R+ AFG  +     Y S +  +    +   ++ DL +    + V    T ET  +++++ +    P  I++N
Sbjct:   56 DAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFS-GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIE-LLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVN 229          
BLAST of FC869080 vs. ExPASy Swiss-Prot
Match: SERA_MYCBO (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium bovis GN=serA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 47/176 (26.70%), Postives = 78/176 (44.32%), Query Frame = 3
Query:  171 DAELIDSLPTLEIVASYSVGXXXXXXXXXXXXAVRVTNTPXXXXXXXXXXXXXXXXXXXRRVCEFDEFVKSGKWKNGHFELGSKFSGKSVGIVGLGRIGTAIAKRVEAFGCPI----SYHSRSEKSHANYKYYTNIIDLASNCQILIVACSLTEETHHIVNRKVIDALXPSGILIN 686
            DAE++ + P L+IVA   VG             V V N P                   R++   D  ++   WK   F  G++  GK+VG+VGLGRIG  +A+R+ AFG  +     Y S +  +    +   ++ DL +    + V    T ET  +++++ +    P  I++N
Sbjct:   56 DAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFS-GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIE-LLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVN 229          
The following BLAST results are available for this feature:
BLAST of FC869080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
GHRB_SALNS6.198e-1127.43Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALHS6.198e-1127.43Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALG26.198e-1127.43Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALEP6.198e-1127.43Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALDC6.198e-1127.43Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALCH6.198e-1127.43Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALA46.198e-1127.43Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
DHGY_HYPME6.198e-1126.40Glycerate dehydrogenase OS=Hyphomicrobium methylov... [more]
SERA_MYCTU8.094e-1126.70D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
SERA_MYCBO8.094e-1126.70D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]

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Properties
Property NameValue
Genbank descriptionC31008C10EF AbioticL1 Citrus clementina cDNA clone C31008C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869080 ID=FC869080; Name=FC869080; organism=Citrus clementina; type=EST; length=688bp
TGGAGAAAATATCTGTTCTTATGACGACTCCAATGTCAAATTACCTCGAA
CAAGAACTCGCAGCCCGCTTCACTCTCTTTAAACTCTGGACTCAATCTTG
CAAAAACAAATTTTTCCAAGAGAATTCAAGTGCCATCAGAGCTGTGGTAG
GTGACACAAAATGTGGGGCTGATGCAGAGCTGATAGATTCACTTCCCACC
TTGGAGATAGTGGCAAGTTACAGTGTGGGATTGGACAAGATTGACTTGGA
CAAGTGTAAAGACAAGGCTGTTAGAGTTACTAACACTCCTGATGTGTTGA
CTGATGACGTGGCAGACTTGGCTGTTGGATTGGTTTTGGCTGTTCTGAGA
AGGGTTTGTGAGTTTGATGAGTTTGTTAAGTCTGGCAAGTGGAAAAATGG
TCACTTCGAATTGGGTTCTAAGTTCAGTGGTAAATCTGTCGGCATTGTTG
GGCTGGGCAGGATTGGAACAGCAATTGCAAAGAGAGTAGAAGCTTTTGGT
TGCCCAATTAGTTATCACTCCAGGTCGGAGAAATCACATGCAAATTATAA
ATACTACACAAACATTATTGACTTAGCCTCCAATTGTCAAATCCTCATTG
TGGCTTGCTCTCTAACAGAGGAAACTCACCACATTGTCAATCGCAAAGTC
ATTGATGCATTANGTCCCAGTGGCATTCTCATCAACAT
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