FC869087

Overview
NameFC869087
Unique NameFC869087
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length652
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15308 contig Ccv1_Contig15308:44..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC869087 vs. ExPASy Swiss-Prot
Match: NCASE_PSEAE (Neutral ceramidase OS=Pseudomonas aeruginosa GN=PA0845 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.478e-22
Identity = 67/191 (35.08%), Postives = 99/191 (51.83%), Query Frame = 1 
Query:   79 GPGYPDEFESTRIIGERQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVAIPKQNGGSETVKTCXXXXXXXXXXXXXXXXXXXXFTQGDDKGNPFWRLVRDLLKK-PDKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQILQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVLAG 648
            GP + +EF++TR IG RQF KA ++  +A E++ G++D R  ++DF++L +     +G    + T                         ++  NPF   +  LL   P +E + CQ  K IL DTG  K+PY W P++LPIQ+ ++GQL +L  P EFT MAG R+R AV+      G      HVV  G
Sbjct:  284 GP-FDNEFDNTREIGLRQFAKAYEIAGQAQEEVLGELDSRFRFVDFTRLPIRPEFTDGQPRQLCTAAIGTSLAAGSTEDGPGPLGL----EEGNNPFLSALGGLLTGVPPQELVQCQAEKTILADTGN-KKPYPWTPTVLPIQMFRIGQLELLGAPAEFTVMAGVRIRRAVQAASEAAGIR----HVVFNG 464
The following BLAST results are available for this feature:
BLAST of FC869087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
NCASE_PSEAE5.478e-2235.08Neutral ceramidase OS=Pseudomonas aeruginosa GN=PA... [more]

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Properties
Property NameValue
Genbank descriptionC31008D06EF AbioticL1 Citrus clementina cDNA clone C31008D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869087 ID=FC869087; Name=FC869087; organism=Citrus clementina; type=EST; length=652bp
TTCTGTATAGTTTCTGGGCTACCTAGAGACTTCAATCATAGTACCTGTGG
TGGGAAGAATGAGATGTGCTACCCCCGAGGACCTGGTTACCCAGACGAAT
TTGAAAGTACACGTATTATTGGAGAGAGGCAATTTAGAAAAGCTGTAGAT
CTTTTCAATAAAGCATCCGAAAAATTAGAAGGAAAGATTGACTACCGTCA
CAGTTATCTGGACTTCTCCCAGCTTGAGGTGGCAATTCCTAAACAAAATG
GAGGATCAGAGACAGTAAAAACATGTCCTGCTGCTATGGGGTTTGCATTT
GCTGCAGGAACAACTGATGGACCAGGAGCATTTGATTTTACCCAAGGAGA
TGACAAGGGCAATCCTTTTTGGAGGCTGGTACGCGACTTACTTAAAAAAC
CAGATAAGGAACAAATTAATTGTCAGTACCCAAAGCCCATCTTACTCGAT
ACTGGTGAAATGAAGCAACCATACGACTGGGCACCTTCAATACTTCCAAT
TCAGATCCTCCAAGTAGGGCAGCTAGTCATTCTTAGTGTACCTGGAGAGT
TTACGACAATGGCTGGGAGGCGACTTCGTGATGCTGTGAAGACGGTGGTC
ACTACTACTGGTGAATCCAATAGCAATGTTCATGTTGTTTTAGCTGGCTT
GA
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