FC869090 | Citrus Genome Database

Overview


Name	FC869090
Unique Name	FC869090
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	598

Libraries


Library Name	Type
AbioticL1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig10231	contig	Ccv1_Contig10231:806..1404.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC869090 vs. ExPASy Swiss-Prot
Match: DNAK_STACT (Chaperone protein dnaK OS=Staphylococcus carnosus (strain TM300) GN=dnaK PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 5.962e-62
Identity = 110/180 (61.11%), Postives = 140/180 (77.78%), Query Frame = 3

Query:    3 LGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNTLLEFLVSEFKRTEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQ 542
            LGGGTFDVSILE+ +GVFEV +T GD  LGG+DFD  ++++LV EFK+  GIDLS+D++ALQRL++AAEKAK +LS  +QT I+LPFI+A  SG  HL ITLTRSKFE L + L+ RT  P +  L DA +++ D+DEV+LVGG TR+P VQE V +  GK P+K VNPDE VA+GAAIQ
Sbjct:  169 LGGGTFDVSILELGDGVFEVLSTAGDNKLGGDDFDQVIIDYLVEEFKKENGIDLSQDKMALQRLKDAAEKAKKDLSGVSQTQISLPFISAGESGPLHLEITLTRSKFEELSDELVRRTMGPTRQALSDAGLSSNDIDEVILVGGSTRIPAVQEAVKKEVGKEPNKSVNPDEVVAMGAAIQ 348

HSP 2 Score: 33.4982 bits (75), Expect = 5.962e-62
Identity = 13/19 (68.42%), Postives = 18/19 (94.74%), Query Frame = 2

Query:  542 GGILRGDVKELLLLDVTPL 598
            GG++ GDVK+++LLDVTPL
Sbjct:  349 GGVISGDVKDVVLLDVTPL 367

[Close]

BLAST of FC869090 vs. ExPASy Swiss-Prot
Match: DNAK_AZOPC (Chaperone protein dnaK OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=dnaK PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 7.770e-62
Identity = 114/180 (63.33%), Postives = 143/180 (79.44%), Query Frame = 3

Query:    3 LGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNTLLEFLVSEFKRTEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQ 542
            LGGGTFD+SILE+ +GVFEV +TNGDT LGG+DFD+ +++FL  EF+R EG+DL KD +A+QRL+EAAEKAKIELSS+T T+INLP+I       KHL +TLTRSKFE L + LI  T  PC+  LK A +T KD++E++LVGG TR+P +Q  V +IFGK PSKGVNPDE VA+GAAIQ
Sbjct:  192 LGGGTFDISILELGSGVFEVLSTNGDTHLGGDDFDHVIIDFLADEFQRNEGLDLRKDAMAMQRLKEAAEKAKIELSSSTSTEINLPYIMPVDGMPKHLIVTLTRSKFEQLSDKLIRSTVDPCEKALKGAGLTAKDINEIILVGGSTRIPIIQTEVEKIFGKVPSKGVNPDEVVAVGAAIQ 371

HSP 2 Score: 25.0238 bits (53), Expect = 7.770e-62
Identity = 13/21 (61.90%), Postives = 16/21 (76.19%), Query Frame = 2

Query:  542 GGILRGD--VKELLLLDVTPL 598
            G IL GD  + E++LLDVTPL
Sbjct:  372 GAILSGDSNLGEMVLLDVTPL 392

[Close]

BLAST of FC869090 vs. ExPASy Swiss-Prot
Match: DNAK_SHEPW (Chaperone protein dnaK OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=dnaK PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 7.770e-62
Identity = 113/184 (61.41%), Postives = 144/184 (78.26%), Query Frame = 3

Query:    3 LGGGTFDVSILEISN----GVFEVKATNGDTFLGGEDFDNTLLEFLVSEFKRTEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQ 542
            LGGGTFD+SI+EI +      FEV ATNGDT LGGEDFDN L+ +L  EFK+ + +DL  D LA+QRL+EAAEKAKIELSSTTQT++NLP+ITADA+G KHL + +TR+K E+LV +LI R+  P K  L DA+++  D++EV+LVGG TR+PKV+E VS  FGK   + VNPDEAVA+GAA+Q
Sbjct:  194 LGGGTFDISIIEIDSVDGEQTFEVLATNGDTHLGGEDFDNRLINYLADEFKKEQSLDLRNDPLAMQRLKEAAEKAKIELSSTTQTEVNLPYITADATGPKHLVVKITRAKLESLVEDLITRSLEPLKVALADADLSVSDINEVILVGGQTRMPKVREEVSSFFGKELRQDVNPDEAVAIGAAVQ 377

HSP 2 Score: 33.113 bits (74), Expect = 7.770e-62
Identity = 14/18 (77.78%), Postives = 17/18 (94.44%), Query Frame = 2

Query:  545 GILRGDVKELLLLDVTPL 598
            G+L GDVK++LLLDVTPL
Sbjct:  379 GVLSGDVKDVLLLDVTPL 396

[Close]

BLAST of FC869090 vs. ExPASy Swiss-Prot
Match: DNAK_AKKM8 (Chaperone protein dnaK OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=dnaK PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 7.770e-62
Identity = 107/180 (59.44%), Postives = 141/180 (78.33%), Query Frame = 3

Query:    3 LGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNTLLEFLVSEFKRTEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQ 542
            LGGGTFD+S+LEI +GVFEVKA++GDT LGG+D+DN ++ +++ EFK+  G+DLS    A+QR++E AEKAKI LSST   DI+LPFITADASG KH+ +TL+R K E L  +L++RTR P  +C+  + + T D+DE++LVGGMTR+P VQE+   + GK P KGVNPDE VALGAAIQ
Sbjct:  196 LGGGTFDISVLEIGDGVFEVKASDGDTHLGGDDWDNAIINWIIGEFKKDSGMDLSNQPDAIQRIKEEAEKAKIALSSTQSYDISLPFITADASGPKHIQLTLSRPKLEQLTEDLLDRTRKPVLDCIAASGLKTGDIDELVLVGGMTRMPAVQEMAHTLAGKEPHKGVNPDEVVALGAAIQ 375

HSP 2 Score: 34.2686 bits (77), Expect = 7.770e-62
Identity = 14/19 (73.68%), Postives = 18/19 (94.74%), Query Frame = 2

Query:  542 GGILRGDVKELLLLDVTPL 598
            GG+L+GDV ++LLLDVTPL
Sbjct:  376 GGVLQGDVNDVLLLDVTPL 394

[Close]

BLAST of FC869090 vs. ExPASy Swiss-Prot
Match: DNAK_CLOB8 (Chaperone protein dnaK OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=dnaK PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 7.773e-62
Identity = 106/180 (58.89%), Postives = 146/180 (81.11%), Query Frame = 3

Query:    3 LGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNTLLEFLVSEFKRTEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQ 542
            LGGGTFDVSIL++ +GVFEV +TNGDT LGG+DFD  +++++  EFK + GIDL +D++A+QRL+EA+EKAKIELS++ QT+INLPFITADA+G KH+++TL+R+KF  + ++L+ER+  P +  L DA ++  D+D+++LVGG TR+P V E V    GK PSKGVNPDE VA+GAAIQ
Sbjct:  171 LGGGTFDVSILDLGDGVFEVLSTNGDTKLGGDDFDEKIMKYIADEFKASNGIDLMQDKMAVQRLKEASEKAKIELSASQQTNINLPFITADATGPKHIDLTLSRAKFNEITHDLVERSIEPMRKALADAKLSLNDIDKIILVGGSTRIPAVVEAVKNFTGKEPSKGVNPDECVAVGAAIQ 350

HSP 2 Score: 30.4166 bits (67), Expect = 7.773e-62
Identity = 12/18 (66.67%), Postives = 17/18 (94.44%), Query Frame = 2

Query:  545 GILRGDVKELLLLDVTPL 598
            G+L G+VK+++LLDVTPL
Sbjct:  352 GVLTGEVKDVVLLDVTPL 369

[Close]

BLAST of FC869090 vs. ExPASy Swiss-Prot
Match: DNAK_STAS1 (Chaperone protein dnaK OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=dnaK PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 7.773e-62
Identity = 109/180 (60.56%), Postives = 141/180 (78.33%), Query Frame = 3

Query:    3 LGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNTLLEFLVSEFKRTEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQ 542
            LGGGTFDVSILE+ +GVFEV +T GD  LGG+DFD  +++ LV+EFK+   +DLSKD++ALQRL++AAEKAK +LS  +QT I+LPFI+A  +G  HL +TLTRSKFE L ++LI RT  P +  +KDA +++ D+DEV+LVGG TR+P VQE V +  GK P KGVNPDE VA+GAAIQ
Sbjct:  169 LGGGTFDVSILELGDGVFEVLSTAGDNKLGGDDFDQVIIDHLVAEFKKENSVDLSKDKMALQRLKDAAEKAKKDLSGVSQTQISLPFISAGENGPLHLELTLTRSKFEELADSLIRRTMEPTRQAMKDAGLSSSDIDEVILVGGSTRIPAVQEAVKKEVGKDPHKGVNPDEVVAMGAAIQ 348

HSP 2 Score: 33.4982 bits (75), Expect = 7.773e-62
Identity = 13/19 (68.42%), Postives = 18/19 (94.74%), Query Frame = 2

Query:  542 GGILRGDVKELLLLDVTPL 598
            GG++ GDVK+++LLDVTPL
Sbjct:  349 GGVITGDVKDVVLLDVTPL 367

[Close]

BLAST of FC869090 vs. ExPASy Swiss-Prot
Match: DNAK_ACIBY (Chaperone protein dnaK OS=Acinetobacter baumannii (strain AYE) GN=dnaK PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.013e-61
Identity = 116/184 (63.04%), Postives = 145/184 (78.80%), Query Frame = 3

Query:    3 LGGGTFDVSILEISN----GVFEVKATNGDTFLGGEDFDNTLLEFLVSEFKRTEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQ 542
            LGGGTFDVSI+EI++       EV +TNGDTFLGGEDFDN L+E+LV EFK+ + ++L  D LALQRL+EAAEKAKIELSS+  T+INLP+ITADA+G KHL I +TR+K E LV +L+ RT  PCK  LKDA ++T D+ +V+LVGG +R+P VQ+ V E FG+ P K VNPDEAVA+GAAIQ
Sbjct:  194 LGGGTFDVSIIEIADLDGDQQIEVLSTNGDTFLGGEDFDNALIEYLVEEFKKEQNVNLKNDPLALQRLKEAAEKAKIELSSSNATEINLPYITADATGPKHLVINVTRAKLEGLVADLVARTIEPCKIALKDAGLSTSDISDVILVGGQSRMPLVQQKVQEFFGREPRKDVNPDEAVAIGAAIQ 377

HSP 2 Score: 28.8758 bits (63), Expect = 1.013e-61
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = 2

Query:  542 GGILRGDVKELLLLDVTPL 598
            G +L GD  ++LLLDVTPL
Sbjct:  378 GAVLSGDKNDVLLLDVTPL 396

[Close]

BLAST of FC869090 vs. ExPASy Swiss-Prot
Match: DNAK_ACIBT (Chaperone protein dnaK OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=dnaK PE=2 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.013e-61
Identity = 116/184 (63.04%), Postives = 145/184 (78.80%), Query Frame = 3

Query:    3 LGGGTFDVSILEISN----GVFEVKATNGDTFLGGEDFDNTLLEFLVSEFKRTEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQ 542
            LGGGTFDVSI+EI++       EV +TNGDTFLGGEDFDN L+E+LV EFK+ + ++L  D LALQRL+EAAEKAKIELSS+  T+INLP+ITADA+G KHL I +TR+K E LV +L+ RT  PCK  LKDA ++T D+ +V+LVGG +R+P VQ+ V E FG+ P K VNPDEAVA+GAAIQ
Sbjct:  194 LGGGTFDVSIIEIADLDGDQQIEVLSTNGDTFLGGEDFDNALIEYLVEEFKKEQNVNLKNDPLALQRLKEAAEKAKIELSSSNATEINLPYITADATGPKHLVINVTRAKLEGLVADLVARTIEPCKIALKDAGLSTSDISDVILVGGQSRMPLVQQKVQEFFGREPRKDVNPDEAVAIGAAIQ 377

HSP 2 Score: 28.8758 bits (63), Expect = 1.013e-61
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = 2

Query:  542 GGILRGDVKELLLLDVTPL 598
            G +L GD  ++LLLDVTPL
Sbjct:  378 GAVLSGDKNDVLLLDVTPL 396

[Close]

BLAST of FC869090 vs. ExPASy Swiss-Prot
Match: DNAK_ACIBC (Chaperone protein dnaK OS=Acinetobacter baumannii (strain ACICU) GN=dnaK PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.013e-61
Identity = 116/184 (63.04%), Postives = 145/184 (78.80%), Query Frame = 3

Query:    3 LGGGTFDVSILEISN----GVFEVKATNGDTFLGGEDFDNTLLEFLVSEFKRTEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQ 542
            LGGGTFDVSI+EI++       EV +TNGDTFLGGEDFDN L+E+LV EFK+ + ++L  D LALQRL+EAAEKAKIELSS+  T+INLP+ITADA+G KHL I +TR+K E LV +L+ RT  PCK  LKDA ++T D+ +V+LVGG +R+P VQ+ V E FG+ P K VNPDEAVA+GAAIQ
Sbjct:  194 LGGGTFDVSIIEIADLDGDQQIEVLSTNGDTFLGGEDFDNALIEYLVEEFKKEQNVNLKNDPLALQRLKEAAEKAKIELSSSNATEINLPYITADATGPKHLVINVTRAKLEGLVADLVARTIEPCKIALKDAGLSTSDISDVILVGGQSRMPLVQQKVQEFFGREPRKDVNPDEAVAIGAAIQ 377

HSP 2 Score: 28.8758 bits (63), Expect = 1.013e-61
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = 2

Query:  542 GGILRGDVKELLLLDVTPL 598
            G +L GD  ++LLLDVTPL
Sbjct:  378 GAVLSGDKNDVLLLDVTPL 396

[Close]

BLAST of FC869090 vs. ExPASy Swiss-Prot
Match: DNAK_ACIB5 (Chaperone protein dnaK OS=Acinetobacter baumannii (strain AB0057) GN=dnaK PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.013e-61
Identity = 116/184 (63.04%), Postives = 145/184 (78.80%), Query Frame = 3

Query:    3 LGGGTFDVSILEISN----GVFEVKATNGDTFLGGEDFDNTLLEFLVSEFKRTEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQ 542
            LGGGTFDVSI+EI++       EV +TNGDTFLGGEDFDN L+E+LV EFK+ + ++L  D LALQRL+EAAEKAKIELSS+  T+INLP+ITADA+G KHL I +TR+K E LV +L+ RT  PCK  LKDA ++T D+ +V+LVGG +R+P VQ+ V E FG+ P K VNPDEAVA+GAAIQ
Sbjct:  194 LGGGTFDVSIIEIADLDGDQQIEVLSTNGDTFLGGEDFDNALIEYLVEEFKKEQNVNLKNDPLALQRLKEAAEKAKIELSSSNATEINLPYITADATGPKHLVINVTRAKLEGLVADLVARTIEPCKIALKDAGLSTSDISDVILVGGQSRMPLVQQKVQEFFGREPRKDVNPDEAVAIGAAIQ 377

HSP 2 Score: 28.8758 bits (63), Expect = 1.013e-61
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = 2

Query:  542 GGILRGDVKELLLLDVTPL 598
            G +L GD  ++LLLDVTPL
Sbjct:  378 GAVLSGDKNDVLLLDVTPL 396

The following BLAST results are available for this feature:

BLAST of FC869090 vs. ExPASy Swiss-Prot

BLAST of FC869090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
DNAK_STACT	5.962e-62	61.11	Chaperone protein dnaK OS=Staphylococcus carnosus ...	[more]
DNAK_AZOPC	7.770e-62	63.33	Chaperone protein dnaK OS=Azobacteroides pseudotri...	[more]
DNAK_SHEPW	7.770e-62	61.41	Chaperone protein dnaK OS=Shewanella piezotolerans...	[more]
DNAK_AKKM8	7.770e-62	59.44	Chaperone protein dnaK OS=Akkermansia muciniphila ...	[more]
DNAK_CLOB8	7.773e-62	58.89	Chaperone protein dnaK OS=Clostridium beijerinckii...	[more]
DNAK_STAS1	7.773e-62	60.56	Chaperone protein dnaK OS=Staphylococcus saprophyt...	[more]
DNAK_ACIBY	1.013e-61	63.04	Chaperone protein dnaK OS=Acinetobacter baumannii ...	[more]
DNAK_ACIBT	1.013e-61	63.04	Chaperone protein dnaK OS=Acinetobacter baumannii ...	[more]
DNAK_ACIBC	1.013e-61	63.04	Chaperone protein dnaK OS=Acinetobacter baumannii ...	[more]
DNAK_ACIB5	1.013e-61	63.04	Chaperone protein dnaK OS=Acinetobacter baumannii ...	[more]

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Properties


Property Name	Value
Genbank description	C31008D09EF AbioticL1 Citrus clementina cDNA clone C31008D09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC869090 ID=FC869090; Name=FC869090; organism=Citrus clementina; type=EST; length=598bp
ATCTTGGTGGCGGAACATTTGATGTCTCAATCCTTGAAATTTCTAATGGA
GTATTTGAGGTGAAAGCAACAAATGGTGACACGTTCTTGGGGGGAGAGGA
TTTTGACAACACTTTGTTGGAGTTTTTAGTGAGTGAATTTAAGAGGACCG
AAGGAATTGATCTGTCAAAGGATAGGCTTGCATTGCAGAGGCTTCGTGAG
GCTGCCGAGAAGGCGAAGATTGAACTTTCATCAACAACCCAGACTGACAT
TAATCTTCCATTCATCACAGCTGATGCGTCAGGTGCAAAGCATTTGAATA
TCACACTTACTAGATCCAAATTTGAGACTTTGGTGAATAACCTGATTGAG
AGGACCAGAGCCCCTTGTAAGAACTGTTTGAAGGATGCCAACATTACCAC
AAAGGATGTGGATGAGGTGCTTTTGGTTGGAGGAATGACCCGTGTGCCAA
AGGTGCAGGAAGTGGTCTCAGAAATCTTTGGTAAGAGTCCAAGCAAGGGA
GTAAATCCTGATGAGGCAGTTGCCCTTGGTGCTGCTATTCAGGTGGTATT
CTTCGTGGCGACGTCAAAGAGTTGCTTCTCTTGGATGTTACACCTCTG