FC869093

Overview
NameFC869093
Unique NameFC869093
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length653
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869093 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.341e-19
Identity = 53/138 (38.41%), Postives = 77/138 (55.80%), Query Frame = 2
Query:  239 VAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRVYVGNLSW 652
            VA+S+E ++E +   +   S      +L+VGNLPFS+ S+QL+ +F  AG V  VE++YD+VT RSRGF FVTM SVEE + A + F+G ++ GR ++VN                             ++YV NLSW
Sbjct:   89 VALSAEEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSW 226          

HSP 2 Score: 69.3218 bits (168), Expect = 1.953e-11
Identity = 35/74 (47.30%), Postives = 46/74 (62.16%), Query Frame = 2
Query:  317 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 538
            KL+V NL +++ S  L   F         +VIYD+ +GRSRGFGF+T SS E + +A    N  ELEGRPLR+N
Sbjct:  218 KLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLN 291          
BLAST of FC869093 vs. ExPASy Swiss-Prot
Match: RBM39_PONAB (RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.598e-13
Identity = 32/74 (43.24%), Postives = 52/74 (70.27%), Query Frame = 2
Query:  314 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRV 535
            ++L+VG+L F++    L G+FE  G +E ++++ D  TGRS+G+GF+T S  E  + A +Q NG+EL GRP++V
Sbjct:  250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323          
BLAST of FC869093 vs. ExPASy Swiss-Prot
Match: RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.598e-13
Identity = 32/74 (43.24%), Postives = 52/74 (70.27%), Query Frame = 2
Query:  314 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRV 535
            ++L+VG+L F++    L G+FE  G +E ++++ D  TGRS+G+GF+T S  E  + A +Q NG+EL GRP++V
Sbjct:  250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323          
BLAST of FC869093 vs. ExPASy Swiss-Prot
Match: RBM39_HUMAN (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.598e-13
Identity = 32/74 (43.24%), Postives = 52/74 (70.27%), Query Frame = 2
Query:  314 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRV 535
            ++L+VG+L F++    L G+FE  G +E ++++ D  TGRS+G+GF+T S  E  + A +Q NG+EL GRP++V
Sbjct:  250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323          
BLAST of FC869093 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.087e-13
Identity = 39/109 (35.78%), Postives = 62/109 (56.88%), Query Frame = 2
Query:  212 SSPSRFARNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 538
            ++P        V+ E        S  DG       +L+VGN+P ++++ +L  + E  G +E+ EV+YDK +GRSR FGFVTM +VE+  A  ++ N  E+ GR ++VN
Sbjct:   53 TNPPLLKVRAVVTEETSSSSTASSSSDGEGAR---RLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVN 158          
BLAST of FC869093 vs. ExPASy Swiss-Prot
Match: RBM23_HUMAN (Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.353e-12
Identity = 32/74 (43.24%), Postives = 50/74 (67.57%), Query Frame = 2
Query:  314 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRV 535
            ++L+VG+L F++    L G+FE  G ++ + ++ D  TGRS+G+GF+T S  E    A +Q NG+EL GRP+RV
Sbjct:  263 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 336          
The following BLAST results are available for this feature:
BLAST of FC869093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
ROC5_NICSY4.341e-1938.4133 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
RBM39_PONAB1.598e-1343.24RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE... [more]
RBM39_MOUSE1.598e-1343.24RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE... [more]
RBM39_HUMAN1.598e-1343.24RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE... [more]
RRP2_SPIOL2.087e-1335.7830S ribosomal protein 2, chloroplastic OS=Spinacia... [more]
RBM23_HUMAN1.353e-1243.24Probable RNA-binding protein 23 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionC31008D12EF AbioticL1 Citrus clementina cDNA clone C31008D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869093 ID=FC869093; Name=FC869093; organism=Citrus clementina; type=EST; length=653bp
CAAAGAAACTCAAAAACCCTTGAGCCAGTAGCCATGTCTACGACGTCAGC
TTCTTCGCTGGTGCTCCCAGTCTCTCAGTCCCAAAACCCTAGCCTTCTAC
AACTCAAAACCCACTTCATTTTCTCTCTTATCTTCCTCCTCTTCTCACAA
ACTTCTAGCGAAGCCCATCTCGATATCCTCTTCTTTCATCCATTCTTTTC
AACCCTTGCCCTCTTCCCCCTCTCGTTTCGCCAGAAACGTAGCCGTTTCG
TCCGAGTTTGACCAGGAAGAGGACCTTTTGAGCGATGAAGACGGTTCGAA
TTTCTCCCCCGACTTGAAACTTTTTGTGGGTAACCTTCCTTTTAGCGTTG
ACAGTGCTCAGCTTGCTGGCTTGTTTGAAACCGCTGGAAATGTTGAGATG
GTTGAGGTAATATATGACAAGGTCACTGGGAGAAGCAGAGGATTTGGTTT
TGTGACCATGTCAAGTGTTGAGGAAGTTGAAGCAGCTGCTCAGCAGTTCA
ATGGCTATGAACTCGAGGGCCGACCCCTGAGGGTGAACTCTGGACCTCCT
CCTCCTAGGAGGGAAGAATTCTCTCCCAGAGGGCCCAGAGGAGGTGGTGC
TGGTGCGCCTTCTAGTGGTGGCACCCGTGTTTATGTTGGTAACCTTTCAT
GGG
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