FC869102

Overview
NameFC869102
Unique NameFC869102
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length610
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869102 vs. ExPASy Swiss-Prot
Match: CYB2_YEAST (Cytochrome b2, mitochondrial OS=Saccharomyces cerevisiae GN=CYB2 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.159e-30
Identity = 71/184 (38.59%), Postives = 111/184 (60.33%), Query Frame = 1
Query:   70 SIMTYISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHP-EGECXXXXXXXXXGT-----IMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRF 603
            S++  +  I N+ ++E LA + L K  + YY+SGA D+ T +EN NA+ RI F+P+IL DV K+D++T +LG ++ +P  ++ TA  K+ +P EGE           T     I TL+S +   + E + +   I+++QLYV  DR +   LVK  E+ G KA+ +TVD P LG+RE D+K +F
Sbjct:  194 SLLPPLDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKF 377          
BLAST of FC869102 vs. ExPASy Swiss-Prot
Match: HAOX2_MOUSE (Hydroxyacid oxidase 2 OS=Mus musculus GN=Hao2 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.310e-27
Identity = 66/161 (40.99%), Postives = 98/161 (60.87%), Query Frame = 1
Query:  109 EYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGP-GIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 588
            +++A A+++L K  +D+    A+D  T  +N  AF RI  RPR LRDVSKID  TT+ G  I+ PI I+PTAF  +A  +GE               +SS+A+ +VE++ +  P G+ +FQLYV  D +++ Q+V+R E  GFKA+ +TVD P LG R  +
Sbjct:    8 DFKAQAQKQLSKTSWDFIEGEADDGITYNDNLAAFRRIRLRPRYLRDVSKIDTRTTIQGQEINAPICISPTAFHSIAWADGEKSTAKAAQKANICYVISSYASYTVEDIVAAAPGGLHWFQLYVQPDWDINKQMVQRIEALGFKALVVTVDAPVLGNRRGN 168          
BLAST of FC869102 vs. ExPASy Swiss-Prot
Match: MDLB_PSEPU ((S)-mandelate dehydrogenase OS=Pseudomonas putida GN=mdlB PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.784e-24
Identity = 61/168 (36.31%), Postives = 92/168 (54.76%), Query Frame = 1
Query:  100 NVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRF 603
            NV +Y  L +++LPKMVYDY   GAED++ ++ NR+ F +  F+P+ L DVS+  +   VLG   SMP++I PT       P+G+          G    LS+ +  S+E+++    G  +FQLYV   R +   +V +A   G+  + LT D    G RE D+ NRF
Sbjct:    7 NVEDYRKLRQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQAEVLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCDGDLWFQLYVI-HREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRF 173          
BLAST of FC869102 vs. ExPASy Swiss-Prot
Match: LLDD2_MYCTU (Putative L-lactate dehydrogenase [cytochrome] 2 OS=Mycobacterium tuberculosis GN=lldD2 PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 8.784e-24
Identity = 62/183 (33.88%), Postives = 95/183 (51.91%), Query Frame = 1
Query:   52 SRKPSDSIMTYISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGP-GIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKN 597
            +R   D+    +     + +   +AK + P+  +DY   GAED+ ++   R  F  I F P ILRDV+ +     VLG    +P  IAPT F ++ H EGE          G   +LS+ AT ++E++    P G ++FQLY+ +DR+    LV+R   AGF  + +TVD P  G R  D++N
Sbjct:   20 NRPQFDTSKRRLGAALTIQDLRRIAKRRTPRAAFDYADGGAEDELSIARARQGFRDIEFHPTILRDVTTVCAGWNVLGQPTVLPFGIAPTGFTRLMHTEGEIAGARAAAAAGIPFSLSTLATCAIEDLVIAVPQGRKWFQLYMWRDRDRSMALVRRVAAAGFDTMLVTVDVPVAGARLRDVRN 202          
BLAST of FC869102 vs. ExPASy Swiss-Prot
Match: LLDD_PSEFS (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas fluorescens (strain SBW25) GN=lldD PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.402e-21
Identity = 56/165 (33.94%), Postives = 85/165 (51.52%), Query Frame = 1
Query:   94 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 588
            I++  +Y A A+ KLP+ ++DY   GA  + T++ N +  + I  R RILR+V  + + TTV G  + MP++++P     M    GE          G    LS+ +   +EEV+S      +FQLYV KDR      ++RA+ AG   +  TVD P  G R  D
Sbjct:    3 ISSASDYRAAAQRKLPRFLFDYIDGGAYAEHTMRANSSDLAEISLRQRILRNVDNLSLKTTVFGQELDMPVILSPVGLTGMYARRGEVQAAKAAANKGVPFCLSTVSVCPIEEVASQSARAIWFQLYVLKDRGFMRNALERAQAAGVTTLVFTVDMPTPGARYRD 167          
BLAST of FC869102 vs. ExPASy Swiss-Prot
Match: LLDD_PSEU2 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas syringae pv. syringae (strain B728a) GN=lldD PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.025e-20
Identity = 55/165 (33.33%), Postives = 86/165 (52.12%), Query Frame = 1
Query:   94 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 588
            I++  +Y A AK KLP+ ++DY   GA  + TL+ N +  + I  R R+L++V  + + T + G +++MPI+++P     M    GE               LS+ +  S+EEV+S      +FQLYV KDR      ++RA+ AG   +  TVD P  G R  D
Sbjct:    3 ISSASDYRAAAKRKLPRFLFDYIDGGAYAEHTLRANGSDLADISLRQRVLKNVDNVSLETRLFGESLAMPIILSPVGLSGMYARRGEVQVARAAANKRIPFCLSTVSVCSIEEVASQSDQAIWFQLYVLKDRGFMKNALERAKAAGVTTLVFTVDMPTPGARYRD 167          
BLAST of FC869102 vs. ExPASy Swiss-Prot
Match: LLDD_VIBPA (L-lactate dehydrogenase [cytochrome] OS=Vibrio parahaemolyticus GN=lldD PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.005e-19
Identity = 53/161 (32.92%), Postives = 82/161 (50.93%), Query Frame = 1
Query:  109 EYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADI 591
            +Y A AK KLP  ++ Y   G+ D+ TL+ N +    +  R R+LRD++ + + T + G  ++MPI +AP     M    GE          G   T+S+ +   +EEV+       +FQLYV KDR     +++RA+ AG   +  TVD P  G R  D+
Sbjct:    8 DYRAAAKAKLPPFLFHYIDGGSYDERTLKRNTDDLGDVALRQRVLRDMTDLSLETEIFGEKLAMPIALAPVGLTGMYARRGEVQAAKAAEKKGIPFTMSTVSVCPIEEVAPAIERPMWFQLYVLKDRGFMKNVLERAKAAGVTTLVFTVDMPVPGARYRDM 168          
BLAST of FC869102 vs. ExPASy Swiss-Prot
Match: LLDD_AZOC5 (L-lactate dehydrogenase [cytochrome] OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=lldD PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.005e-19
Identity = 55/165 (33.33%), Postives = 83/165 (50.30%), Query Frame = 1
Query:   94 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 588
            I++  +Y A AK +LP  ++ Y   GA  ++TL+ N    S I  R ++LR+V+ + + T + G  ++MP+ +AP     M    GE          G   TLS+ +   +EEV S      +FQLYV KDR      ++RA+ AG   +  TVD P  G R  D
Sbjct:    3 ISSPNDYRAAAKSRLPPFLFHYVDGGAYAEYTLRRNVEDLSHIALRQQVLRNVADLSLETELFGQKLTMPVALAPVGLTGMLARRGEVQAAKAAQAKGVPFTLSTVSVCPIEEVQSQCAKPIWFQLYVLKDRGFMRNALERAQAAGINTLIFTVDMPVPGARYRD 167          
BLAST of FC869102 vs. ExPASy Swiss-Prot
Match: LLDD_XANP2 (L-lactate dehydrogenase [cytochrome] OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=lldD PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.239e-19
Identity = 56/165 (33.94%), Postives = 84/165 (50.91%), Query Frame = 1
Query:   94 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 588
            I++  +Y   A+ +LP  ++ Y   GA  + TL+ N    S +  R R+L+ V ++D++TT+L   +SMP+ +AP     M    GE          G   TLS+ +  S+EEV S      +FQLYV KDR      ++RA  AG + +  TVD P  G R  D
Sbjct:    3 ISSSSDYREAARRRLPPFLFHYIDGGAYAEATLRRNVEDLSDLALRQRVLKSVGEVDLSTTLLKQQLSMPVGLAPVGLTGMYARRGEVQAAQAATQKGIPFTLSTVSVCSIEEVQSQVGKPIWFQLYVLKDRGFMKNALERAWAAGIRTLVFTVDMPVPGARYRD 167          
BLAST of FC869102 vs. ExPASy Swiss-Prot
Match: LLDD_CAUCR (L-lactate dehydrogenase [cytochrome] OS=Caulobacter crescentus GN=lldD PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.819e-19
Identity = 52/165 (31.52%), Postives = 82/165 (49.70%), Query Frame = 1
Query:   94 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 588
            +++  ++   A+ +LP+ ++DY   GA  + T+  N +  + I  R R+L DVS +D +TT+ G   ++P+ +AP     M    GEC         G    LS+ +   V+EV +      +FQLYV +DR     L+ RA  AG   +  TVD P  G R  D
Sbjct:    3 VSSTTDFREAARRRLPRFLFDYIDGGAYAERTMARNIDDLADIALRQRVLMDVSVVDPSTTLFGVRQALPVALAPVGLTGMYARRGECQAARAAAAKGVPFCLSTVSVCDVDEVRAASATPFWFQLYVLRDRGFMRDLLARASAAGATTLVFTVDMPVPGARYRD 167          
The following BLAST results are available for this feature:
BLAST of FC869102 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
CYB2_YEAST2.159e-3038.59Cytochrome b2, mitochondrial OS=Saccharomyces cere... [more]
HAOX2_MOUSE1.310e-2740.99Hydroxyacid oxidase 2 OS=Mus musculus GN=Hao2 PE=2... [more]
MDLB_PSEPU8.784e-2436.31(S)-mandelate dehydrogenase OS=Pseudomonas putida ... [more]
LLDD2_MYCTU8.784e-2433.88Putative L-lactate dehydrogenase [cytochrome] 2 OS... [more]
LLDD_PSEFS1.402e-2133.94L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEU22.025e-2033.33L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_VIBPA1.005e-1932.92L-lactate dehydrogenase [cytochrome] OS=Vibrio par... [more]
LLDD_AZOC51.005e-1933.33L-lactate dehydrogenase [cytochrome] OS=Azorhizobi... [more]
LLDD_XANP22.239e-1933.94L-lactate dehydrogenase [cytochrome] OS=Xanthobact... [more]
LLDD_CAUCR3.819e-1931.52L-lactate dehydrogenase [cytochrome] OS=Caulobacte... [more]

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Properties
Property NameValue
Genbank descriptionC31008E09EF AbioticL1 Citrus clementina cDNA clone C31008E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869102 ID=FC869102; Name=FC869102; organism=Citrus clementina; type=EST; length=610bp
CTTTATTGCTTTGCGCTCCCTTCACTGATTCATTTCTGCTTCCCTTGTTG
TTCAAGGAAGCCAAGCGATAGCATTATGACTTATATATCGGAGATCACCA
ATGTTATGGAGTATGAGGCTCTTGCAAAGGAGAAATTGCCGAAGATGGTT
TATGACTACTATGCATCAGGTGCTGAGGACCAGTGGACTCTTCAGGAAAA
CCGTAATGCATTCTCTAGGATTCTATTTCGACCACGCATTCTTAGAGATG
TAAGCAAGATTGACATGACTACAACAGTCTTGGGCTTCAACATTTCCATG
CCCATCATGATTGCTCCAACGGCATTTCAGAAAATGGCTCATCCTGAAGG
GGAGTGTGCAACAGCAAGGGCAGCCTCAGCAGCTGGCACAATCATGACAT
TATCTTCATGGGCCACTTCCAGTGTCGAGGAAGTTTCTTCAACGGGACCT
GGAATTCGCTTTTTCCAACTCTATGTGACCAAGGACAGGAATGTGGACGC
ACAGCTAGTAAAAAGAGCTGAAAGGGCTGGTTTTAAGGCGATTGCCCTTA
CCGTCGATACTCCAAGGCTTGGCCGTCGGGAAGCTGATATTAAGAACAGA
TTTGTTTTGC
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