FC869102

Overview
NameFC869102
Unique NameFC869102
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length610
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869102 vs. ExPASy Swiss-Prot
Match: LLDD_YERPE (L-lactate dehydrogenase [cytochrome] OS=Yersinia pestis GN=lldD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.476e-18
Identity = 52/160 (32.50%), Postives = 80/160 (50.00%), Query Frame = 1
Query:  109 EYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 588
            +Y A A+ KLP  ++ Y   GA ++ TL+ N    + I  R R+L+++S++ + T + G   +MP+++ P     M    GE          G   TLS+ +   +EEV+       +FQLYV KDR      + RA+ AG K +  TVD P  G R  D
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYNEQTLRRNTADLADIALRQRVLKNMSELSLETQLFGETQAMPVVLGPVGLSGMYARRGEVQAARAADKKGIPFTLSTLSVCPIEEVAPAIARPMWFQLYVLKDRGFMRNALTRAQAAGVKTLVFTVDMPVPGARYRD 167          
BLAST of FC869102 vs. ExPASy Swiss-Prot
Match: LLDD_YERPB (L-lactate dehydrogenase [cytochrome] OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=lldD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.476e-18
Identity = 52/160 (32.50%), Postives = 80/160 (50.00%), Query Frame = 1
Query:  109 EYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 588
            +Y A A+ KLP  ++ Y   GA ++ TL+ N    + I  R R+L+++S++ + T + G   +MP+++ P     M    GE          G   TLS+ +   +EEV+       +FQLYV KDR      + RA+ AG K +  TVD P  G R  D
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYNEQTLRRNTADLADIALRQRVLKNMSELSLETQLFGETQAMPVVLGPVGLSGMYARRGEVQAARAADKKGIPFTLSTLSVCPIEEVAPAIARPMWFQLYVLKDRGFMRNALTRAQAAGVKTLVFTVDMPVPGARYRD 167          
BLAST of FC869102 vs. ExPASy Swiss-Prot
Match: LLDD_YERPA (L-lactate dehydrogenase [cytochrome] OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=lldD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.476e-18
Identity = 52/160 (32.50%), Postives = 80/160 (50.00%), Query Frame = 1
Query:  109 EYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 588
            +Y A A+ KLP  ++ Y   GA ++ TL+ N    + I  R R+L+++S++ + T + G   +MP+++ P     M    GE          G   TLS+ +   +EEV+       +FQLYV KDR      + RA+ AG K +  TVD P  G R  D
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYNEQTLRRNTADLADIALRQRVLKNMSELSLETQLFGETQAMPVVLGPVGLSGMYARRGEVQAARAADKKGIPFTLSTLSVCPIEEVAPAIARPMWFQLYVLKDRGFMRNALTRAQAAGVKTLVFTVDMPVPGARYRD 167          
BLAST of FC869102 vs. ExPASy Swiss-Prot
Match: LLDD_YERP3 (L-lactate dehydrogenase [cytochrome] OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=lldD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.476e-18
Identity = 52/160 (32.50%), Postives = 80/160 (50.00%), Query Frame = 1
Query:  109 EYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 588
            +Y A A+ KLP  ++ Y   GA ++ TL+ N    + I  R R+L+++S++ + T + G   +MP+++ P     M    GE          G   TLS+ +   +EEV+       +FQLYV KDR      + RA+ AG K +  TVD P  G R  D
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYNEQTLRRNTADLADIALRQRVLKNMSELSLETQLFGETQAMPVVLGPVGLSGMYARRGEVQAARAADKKGIPFTLSTLSVCPIEEVAPAIARPMWFQLYVLKDRGFMRNALTRAQAAGVKTLVFTVDMPVPGARYRD 167          
BLAST of FC869102 vs. ExPASy Swiss-Prot
Match: LLDD_SHISS (L-lactate dehydrogenase [cytochrome] OS=Shigella sonnei (strain Ss046) GN=lldD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.476e-18
Identity = 53/165 (32.12%), Postives = 81/165 (49.09%), Query Frame = 1
Query:   94 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 588
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S +  R RIL+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+       +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC869102 vs. ExPASy Swiss-Prot
Match: LLDD_SHIFL (L-lactate dehydrogenase [cytochrome] OS=Shigella flexneri GN=lldD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.476e-18
Identity = 53/165 (32.12%), Postives = 81/165 (49.09%), Query Frame = 1
Query:   94 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 588
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S +  R RIL+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+       +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC869102 vs. ExPASy Swiss-Prot
Match: LLDD_SHIF8 (L-lactate dehydrogenase [cytochrome] OS=Shigella flexneri serotype 5b (strain 8401) GN=lldD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.476e-18
Identity = 53/165 (32.12%), Postives = 81/165 (49.09%), Query Frame = 1
Query:   94 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 588
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S +  R RIL+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+       +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC869102 vs. ExPASy Swiss-Prot
Match: LLDD_SHIDS (L-lactate dehydrogenase [cytochrome] OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=lldD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.476e-18
Identity = 53/165 (32.12%), Postives = 81/165 (49.09%), Query Frame = 1
Query:   94 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 588
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S +  R RIL+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+       +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC869102 vs. ExPASy Swiss-Prot
Match: LLDD_SHIBS (L-lactate dehydrogenase [cytochrome] OS=Shigella boydii serotype 4 (strain Sb227) GN=lldD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.476e-18
Identity = 53/165 (32.12%), Postives = 81/165 (49.09%), Query Frame = 1
Query:   94 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 588
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S +  R RIL+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+       +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADTHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC869102 vs. ExPASy Swiss-Prot
Match: LLDD_SHIB3 (L-lactate dehydrogenase [cytochrome] OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=lldD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.476e-18
Identity = 53/165 (32.12%), Postives = 81/165 (49.09%), Query Frame = 1
Query:   94 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 588
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S +  R RIL+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+       +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRD 167          
The following BLAST results are available for this feature:
BLAST of FC869102 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_YERPE2.476e-1832.50L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPB2.476e-1832.50L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPA2.476e-1832.50L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERP32.476e-1832.50L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_SHISS2.476e-1832.12L-lactate dehydrogenase [cytochrome] OS=Shigella s... [more]
LLDD_SHIFL2.476e-1832.12L-lactate dehydrogenase [cytochrome] OS=Shigella f... [more]
LLDD_SHIF82.476e-1832.12L-lactate dehydrogenase [cytochrome] OS=Shigella f... [more]
LLDD_SHIDS2.476e-1832.12L-lactate dehydrogenase [cytochrome] OS=Shigella d... [more]
LLDD_SHIBS2.476e-1832.12L-lactate dehydrogenase [cytochrome] OS=Shigella b... [more]
LLDD_SHIB32.476e-1832.12L-lactate dehydrogenase [cytochrome] OS=Shigella b... [more]

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Properties
Property NameValue
Genbank descriptionC31008E09EF AbioticL1 Citrus clementina cDNA clone C31008E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869102 ID=FC869102; Name=FC869102; organism=Citrus clementina; type=EST; length=610bp
CTTTATTGCTTTGCGCTCCCTTCACTGATTCATTTCTGCTTCCCTTGTTG
TTCAAGGAAGCCAAGCGATAGCATTATGACTTATATATCGGAGATCACCA
ATGTTATGGAGTATGAGGCTCTTGCAAAGGAGAAATTGCCGAAGATGGTT
TATGACTACTATGCATCAGGTGCTGAGGACCAGTGGACTCTTCAGGAAAA
CCGTAATGCATTCTCTAGGATTCTATTTCGACCACGCATTCTTAGAGATG
TAAGCAAGATTGACATGACTACAACAGTCTTGGGCTTCAACATTTCCATG
CCCATCATGATTGCTCCAACGGCATTTCAGAAAATGGCTCATCCTGAAGG
GGAGTGTGCAACAGCAAGGGCAGCCTCAGCAGCTGGCACAATCATGACAT
TATCTTCATGGGCCACTTCCAGTGTCGAGGAAGTTTCTTCAACGGGACCT
GGAATTCGCTTTTTCCAACTCTATGTGACCAAGGACAGGAATGTGGACGC
ACAGCTAGTAAAAAGAGCTGAAAGGGCTGGTTTTAAGGCGATTGCCCTTA
CCGTCGATACTCCAAGGCTTGGCCGTCGGGAAGCTGATATTAAGAACAGA
TTTGTTTTGC
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