FC869102

Overview
NameFC869102
Unique NameFC869102
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length610
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869102 vs. ExPASy Swiss-Prot
Match: LLDD_ECO5E (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.476e-18
Identity = 53/165 (32.12%), Postives = 81/165 (49.09%), Query Frame = 1
Query:   94 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 588
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S +  R RIL+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+       +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC869102 vs. ExPASy Swiss-Prot
Match: LLDD_ECO57 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O157:H7 GN=lldD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.476e-18
Identity = 53/165 (32.12%), Postives = 81/165 (49.09%), Query Frame = 1
Query:   94 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 588
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S +  R RIL+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+       +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC869102 vs. ExPASy Swiss-Prot
Match: LLDD_ECO55 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain 55989 / EAEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.476e-18
Identity = 53/165 (32.12%), Postives = 81/165 (49.09%), Query Frame = 1
Query:   94 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 588
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S +  R RIL+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+       +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC869102 vs. ExPASy Swiss-Prot
Match: LLDD_ECO24 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.476e-18
Identity = 53/165 (32.12%), Postives = 81/165 (49.09%), Query Frame = 1
Query:   94 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 588
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S +  R RIL+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+       +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC869102 vs. ExPASy Swiss-Prot
Match: LLDD_ALCFA (L-lactate dehydrogenase [cytochrome] OS=Alcaligenes faecalis GN=lldD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.476e-18
Identity = 51/165 (30.91%), Postives = 84/165 (50.91%), Query Frame = 1
Query:   94 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 588
            I++  +Y   A+++LP  ++ Y   GA  + TL+ N +  + +  R R+L+D+S++D +  + G  +SMP+ ++P     M    GE          G   T+SS +   +EEV+       +FQLYV KDR      ++RA+ AG   +  TVD P  G R  D
Sbjct:    3 ISSSTDYRRAAQKRLPPFLFHYIDGGAYAEHTLRRNVDDLAEVALRQRVLKDMSQLDTSIDLFGEKLSMPVALSPVGLTGMYARRGEVQAARAADARGIPFTMSSVSVCPIEEVAPRLSRPMWFQLYVLKDRGFMRNALERAQAAGCSTLVFTVDMPVPGARYRD 167          
BLAST of FC869102 vs. ExPASy Swiss-Prot
Match: LLDD_SALNS (L-lactate dehydrogenase [cytochrome] OS=Salmonella newport (strain SL254) GN=lldD PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.233e-18
Identity = 52/165 (31.52%), Postives = 82/165 (49.70%), Query Frame = 1
Query:   94 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 588
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S++  R R+L+++S + + T +    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+ T     +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D
Sbjct:    3 ISAASDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETPLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC869102 vs. ExPASy Swiss-Prot
Match: LLDD_PSEAE (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa GN=lldD PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.233e-18
Identity = 52/160 (32.50%), Postives = 80/160 (50.00%), Query Frame = 1
Query:  109 EYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 588
            +Y A A+ KLP  ++ Y   GA  ++TL+ N    S I  R R+L+++S++ + T +    ++MP+ +AP     M    GE          G   TLS+ +   +EEV+       +FQLYV KDR      ++RA+ AG   +  TVD P  G R  D
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYAEYTLRRNVEDLSAIALRQRVLKNMSELSLETRLFDETLAMPVALAPVGLTGMYARRGEVQAARAAAAKGVPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKAAGVTTLVFTVDMPVPGARYRD 167          
BLAST of FC869102 vs. ExPASy Swiss-Prot
Match: LLDD_PSEAB (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=lldD PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.233e-18
Identity = 52/160 (32.50%), Postives = 80/160 (50.00%), Query Frame = 1
Query:  109 EYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 588
            +Y A A+ KLP  ++ Y   GA  ++TL+ N    S I  R R+L+++S++ + T +    ++MP+ +AP     M    GE          G   TLS+ +   +EEV+       +FQLYV KDR      ++RA+ AG   +  TVD P  G R  D
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYAEYTLRRNVEDLSAIALRQRVLKNMSELSLETRLFDETLAMPVALAPVGLTGMYARRGEVQAARAAAAKGVPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKAAGVTTLVFTVDMPVPGARYRD 167          
BLAST of FC869102 vs. ExPASy Swiss-Prot
Match: LLDD_PSEA8 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa (strain LESB58) GN=lldD PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.233e-18
Identity = 52/160 (32.50%), Postives = 80/160 (50.00%), Query Frame = 1
Query:  109 EYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 588
            +Y A A+ KLP  ++ Y   GA  ++TL+ N    S I  R R+L+++S++ + T +    ++MP+ +AP     M    GE          G   TLS+ +   +EEV+       +FQLYV KDR      ++RA+ AG   +  TVD P  G R  D
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYAEYTLRRNVEDLSAIALRQRVLKNMSELSLETRLFDETLAMPVALAPVGLTGMYARRGEVQAARAAAAKGVPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKAAGVTTLVFTVDMPVPGARYRD 167          
BLAST of FC869102 vs. ExPASy Swiss-Prot
Match: LLDD_PSEA7 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa (strain PA7) GN=lldD PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.233e-18
Identity = 52/160 (32.50%), Postives = 80/160 (50.00%), Query Frame = 1
Query:  109 EYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 588
            +Y A A+ KLP  ++ Y   GA  ++TL+ N    S I  R R+L+++S++ + T +    ++MP+ +AP     M    GE          G   TLS+ +   +EEV+       +FQLYV KDR      ++RA+ AG   +  TVD P  G R  D
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYAEYTLRRNVEDLSAIALRQRVLKNMSELSLETRLFDETLAMPVALAPVGLTGMYARRGEVQAARAAAAKGVPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKAAGVTTLVFTVDMPVPGARYRD 167          
The following BLAST results are available for this feature:
BLAST of FC869102 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_ECO5E2.476e-1832.12L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECO572.476e-1832.12L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECO552.476e-1832.12L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECO242.476e-1832.12L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ALCFA2.476e-1830.91L-lactate dehydrogenase [cytochrome] OS=Alcaligene... [more]
LLDD_SALNS3.233e-1831.52L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_PSEAE3.233e-1832.50L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEAB3.233e-1832.50L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEA83.233e-1832.50L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEA73.233e-1832.50L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]

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Properties
Property NameValue
Genbank descriptionC31008E09EF AbioticL1 Citrus clementina cDNA clone C31008E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869102 ID=FC869102; Name=FC869102; organism=Citrus clementina; type=EST; length=610bp
CTTTATTGCTTTGCGCTCCCTTCACTGATTCATTTCTGCTTCCCTTGTTG
TTCAAGGAAGCCAAGCGATAGCATTATGACTTATATATCGGAGATCACCA
ATGTTATGGAGTATGAGGCTCTTGCAAAGGAGAAATTGCCGAAGATGGTT
TATGACTACTATGCATCAGGTGCTGAGGACCAGTGGACTCTTCAGGAAAA
CCGTAATGCATTCTCTAGGATTCTATTTCGACCACGCATTCTTAGAGATG
TAAGCAAGATTGACATGACTACAACAGTCTTGGGCTTCAACATTTCCATG
CCCATCATGATTGCTCCAACGGCATTTCAGAAAATGGCTCATCCTGAAGG
GGAGTGTGCAACAGCAAGGGCAGCCTCAGCAGCTGGCACAATCATGACAT
TATCTTCATGGGCCACTTCCAGTGTCGAGGAAGTTTCTTCAACGGGACCT
GGAATTCGCTTTTTCCAACTCTATGTGACCAAGGACAGGAATGTGGACGC
ACAGCTAGTAAAAAGAGCTGAAAGGGCTGGTTTTAAGGCGATTGCCCTTA
CCGTCGATACTCCAAGGCTTGGCCGTCGGGAAGCTGATATTAAGAACAGA
TTTGTTTTGC
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