FC869110

Overview
NameFC869110
Unique NameFC869110
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length629
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRIA_ANAVT (Cytochrome b6-f complex iron-sulfur subunit 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petC PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.189e-51
Identity = 92/144 (63.89%), Postives = 109/144 (75.69%), Query Frame = 3
Query:  180 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHA 611
            VPDMG+RQ MNLL  G V+      L P   +F PP  G AGGGTTAKD +GND+  + +L +H  GDRTL +GLKGDPTY+VVE  + +  YGI+AVCTHLGCVVPWN+AENKF CPCHGSQY+  G+VVRGPAP SLAL+HA
Sbjct:   10 VPDMGRRQFMNLLTFGTVTGVALGALYPVVNYFIPPATGGAGGGTTAKDELGNDVSVSKFLESHNVGDRTLVQGLKGDPTYIVVESKEAITDYGINAVCTHLGCVVPWNAAENKFKCPCHGSQYDATGKVVRGPAPKSLALSHA 153          
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRIA_ANASP (Cytochrome b6-f complex iron-sulfur subunit 1 OS=Anabaena sp. (strain PCC 7120) GN=petC1 PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.189e-51
Identity = 92/144 (63.89%), Postives = 109/144 (75.69%), Query Frame = 3
Query:  180 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHA 611
            VPDMG+RQ MNLL  G V+      L P   +F PP  G AGGGTTAKD +GND+  + +L +H  GDRTL +GLKGDPTY+VVE  + +  YGI+AVCTHLGCVVPWN+AENKF CPCHGSQY+  G+VVRGPAP SLAL+HA
Sbjct:   10 VPDMGRRQFMNLLTFGTVTGVALGALYPVVNYFIPPAAGGAGGGTTAKDELGNDVSVSKFLESHNVGDRTLVQGLKGDPTYIVVESKEAITDYGINAVCTHLGCVVPWNAAENKFKCPCHGSQYDATGKVVRGPAPKSLALSHA 153          
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRI_SYNS3 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain CC9311) GN=petC PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 6.777e-51
Identity = 91/153 (59.48%), Postives = 114/153 (74.51%), Query Frame = 3
Query:  159 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHATL 617
            T +PA  VP MG+RQ MNLL  G+V+      L P A +F PP     GGGT+AKD +GN + A+ WL++H  GDR+L +GLKGDPTYL+VE    + SYGI+A+CTHLGCVVPWNS  NKF+CPCHGSQY+  G+VVRGPAPLSLALA+ ++
Sbjct:    2 TQMPASDVPGMGRRQFMNLLTFGSVTGVALGALYPVANYFIPPRAAGGGGGTSAKDELGNSVTASGWLSSHAEGDRSLVQGLKGDPTYLIVEGVDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDATGKVVRGPAPLSLALANVSV 154          
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRI_SYNSC (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain CC9605) GN=petC PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.156e-50
Identity = 90/154 (58.44%), Postives = 117/154 (75.97%), Query Frame = 3
Query:  159 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHATLK 620
            T + +  VP MG+RQ MNLL  G+V+      L P A +F PP    +GGGT+AKD +GN I A+ WL++H  GDR+L +GLKGDPTYL+VE +  + SYGI+A+CTHLGCVVPWNS  NKF+CPCHGSQY++ G+VVRGPAPLSLALA+ +++
Sbjct:    2 TQLSSSDVPGMGRRQFMNLLTFGSVTGVALGALYPVANYFIPPKAAGSGGGTSAKDELGNPITASGWLSSHPEGDRSLVQGLKGDPTYLIVEGEDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDSTGKVVRGPAPLSLALANVSVE 155          
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRI_PROMM (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9313) GN=petC PE=3 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.156e-50
Identity = 90/154 (58.44%), Postives = 113/154 (73.38%), Query Frame = 3
Query:  159 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHATLK 620
            T + +  VP MG+RQ MNLL  G+V+      L P   +F PP    +GGGT+AKD +GN + A+ WL  H  GDR+L +GLKGDPTYL+VE D  + SYGI+A+CTHLGCVVPWNS  NKF+CPCHGSQYN+ G+VVRGPAPLSLALA+  ++
Sbjct:    2 TQMTSSDVPGMGRRQFMNLLTFGSVTGVALGSLYPVVKYFIPPRASGSGGGTSAKDELGNSVTASGWLANHSDGDRSLVQGLKGDPTYLIVEGDDAIGSYGINAICTHLGCVVPWNSGVNKFVCPCHGSQYNSTGKVVRGPAPLSLALANIAVE 155          
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRI_PROM3 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9303) GN=petC PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.156e-50
Identity = 90/154 (58.44%), Postives = 113/154 (73.38%), Query Frame = 3
Query:  159 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHATLK 620
            T + +  VP MG+RQ MNLL  G+V+      L P   +F PP    +GGGT+AKD +GN + A+ WL  H  GDR+L +GLKGDPTYL+VE D  + SYGI+A+CTHLGCVVPWNS  NKF+CPCHGSQYN+ G+VVRGPAPLSLALA+  ++
Sbjct:    2 TQMTSSDVPGMGRRQFMNLLTFGSVTGVALGSLYPVVKYFIPPRASGSGGGTSAKDELGNSVTASGWLANHSDGDRSLVQGLKGDPTYLIVEGDDAIGSYGINAICTHLGCVVPWNSGVNKFVCPCHGSQYNSTGKVVRGPAPLSLALANIAVE 155          
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRI_SYNR3 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain RCC307) GN=petC PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.510e-50
Identity = 91/154 (59.09%), Postives = 112/154 (72.73%), Query Frame = 3
Query:  159 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHATLK 620
            T I A  VP MG+RQ MNLL  G+V+      L P   +F PP    AGGGTTAKD +GND+ A+ WL  H  GDR+L +GLKGDPTYL+V+   ++  YGI+A+CTHLGCVVPWN+  NKF+CPCHGSQY+  G+VVRGPAPLSLALAH  ++
Sbjct:    2 TQISAKDVPGMGRRQFMNLLTFGSVTGVALGALYPVVNYFIPPKASGAGGGTTAKDELGNDVTASGWLADHKEGDRSLVQGLKGDPTYLIVDGPDSIGDYGINAICTHLGCVVPWNAGANKFMCPCHGSQYDATGKVVRGPAPLSLALAHVNVE 155          
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRI_SYNP6 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petC PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.972e-50
Identity = 91/149 (61.07%), Postives = 111/149 (74.50%), Query Frame = 3
Query:  171 ADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHATL 617
            A  VP MG+RQ MNLL  G+V+      L P   +F PP  G +GGG  AKDA+GND++ + +L  H  GDRTL +GLKGDPTYLVVE  + +  YGI+AVCTHLGCVVPWN++ENKF CPCHGSQY+  G+VVRGPAPLSLALAH ++
Sbjct:    7 ASDVPSMGRRQFMNLLTFGSVTGVALGALYPVVNYFIPPSSGGSGGGVAAKDALGNDVVLSKFLADHNVGDRTLVQGLKGDPTYLVVESSEAIGDYGINAVCTHLGCVVPWNASENKFKCPCHGSQYDATGKVVRGPAPLSLALAHVSV 155          
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRI_SYNE7 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus elongatus (strain PCC 7942) GN=petC PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.972e-50
Identity = 91/149 (61.07%), Postives = 111/149 (74.50%), Query Frame = 3
Query:  171 ADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHATL 617
            A  VP MG+RQ MNLL  G+V+      L P   +F PP  G +GGG  AKDA+GND++ + +L  H  GDRTL +GLKGDPTYLVVE  + +  YGI+AVCTHLGCVVPWN++ENKF CPCHGSQY+  G+VVRGPAPLSLALAH ++
Sbjct:    7 ASDVPSMGRRQFMNLLTFGSVTGVALGALYPVVNYFIPPSSGGSGGGVAAKDALGNDVVLSKFLADHNVGDRTLVQGLKGDPTYLVVESSEAIGDYGINAVCTHLGCVVPWNASENKFKCPCHGSQYDATGKVVRGPAPLSLALAHVSV 155          
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRI_MASLA (Cytochrome b6-f complex iron-sulfur subunit OS=Mastigocladus laminosus GN=petC PE=1 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 1.972e-50
Identity = 90/147 (61.22%), Postives = 111/147 (75.51%), Query Frame = 3
Query:  180 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHATLK 620
            VPDMG+RQ MNLL  G V+      L P   +F PP  G+ GGGTTAKD +GN++  + +L +H  GDR L +GLKGDPTY+VVE  + +  YGI+AVCTHLGCVVPWN+AENKF CPCHGSQY+  G+V+RGPAPLSLAL HAT++
Sbjct:   10 VPDMGRRQFMNLLAFGTVTGVALGALYPLVKYFIPPSGGAVGGGTTAKDKLGNNVKVSKFLESHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNAAENKFKCPCHGSQYDETGKVIRGPAPLSLALCHATVQ 156          
The following BLAST results are available for this feature:
BLAST of FC869110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
UCRIA_ANAVT5.189e-5163.89Cytochrome b6-f complex iron-sulfur subunit 1 OS=A... [more]
UCRIA_ANASP5.189e-5163.89Cytochrome b6-f complex iron-sulfur subunit 1 OS=A... [more]
UCRI_SYNS36.777e-5159.48Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNSC1.156e-5058.44Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_PROMM1.156e-5058.44Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM31.156e-5058.44Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_SYNR31.510e-5059.09Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNP61.972e-5061.07Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNE71.972e-5061.07Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_MASLA1.972e-5061.22Cytochrome b6-f complex iron-sulfur subunit OS=Mas... [more]

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Properties
Property NameValue
Genbank descriptionC31008F05EF AbioticL1 Citrus clementina cDNA clone C31008F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869110 ID=FC869110; Name=FC869110; organism=Citrus clementina; type=EST; length=629bp
CAATGGCTTCCTCCTCTTCTCTCTCCTCAGCAACTCCTTCCCAGCTATGC
TCAAGCAAGAGTGGTATGTTCTGTCCATCGAGAGCTTTTCTTGTGAAACC
AGCAAGGACCCAGATGGTGACAAAGAATCCAATGGGAATGAAGATCAAGT
GCCAGGCTACAAGTATTCCAGCTGATAGAGTGCCTGATATGGGCAAGAGG
CAGCTCATGAATTTGCTTCTCTTGGGTGCTGTTTCTCTTCCCACTGGATT
TATGTTGGTTCCTTATGCGACCTTCTTTGCCCCACCCGGTTTAGGAAGTG
CTGGTGGTGGTACTACTGCCAAGGATGCCATTGGCAATGACATCATTGCC
GCTGATTGGCTTAACACGCACGGCCCTGGGGACCGAACCCTCACCGAAGG
ATTGAAGGGAGATCCAACCTACCTTGTTGTGGAAAAAGACAAAACACTTG
CATCATATGGAATCGATGCTGTCTGCACTCACCTTGGATGTGTGGTGCCA
TGGAATTCAGCTGAGAACAAGTTCATCTGTCCCTGCCACGGATCCCAATA
CAATAACCAAGGAAGAGTTGTGAGAGGGCCTGCTCCATTGTCATTGGCAT
TGGCTCATGCCACATTGAAAATGGTAAGG
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