FC869110

Overview
NameFC869110
Unique NameFC869110
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length629
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRI_THEEB (Cytochrome b6-f complex iron-sulfur subunit OS=Thermosynechococcus elongatus (strain BP-1) GN=petC PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.575e-50
Identity = 89/146 (60.96%), Postives = 112/146 (76.71%), Query Frame = 3
Query:  180 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHATL 617
            VPDMG+RQ MNLL  G ++      L P   +F PP  G  GGG  AKDA+GNDI  +++L  H PGDR+L +G+KGDPTY++V +D  +A+YG++AVCTHLGCVVPWN +ENKFICPCHGSQY++ G+VVRGPAPLSLAL  AT+
Sbjct:   10 VPDMGRRQFMNLLTFGTITGTALGALYPVVKYFIPPASGGTGGGAVAKDALGNDIKVSEYLAKHLPGDRSLAQGIKGDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNVSENKFICPCHGSQYDSTGKVVRGPAPLSLALVKATV 155          
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRI_SYNEL (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus elongatus GN=petC PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.575e-50
Identity = 89/146 (60.96%), Postives = 112/146 (76.71%), Query Frame = 3
Query:  180 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHATL 617
            VPDMG+RQ MNLL  G ++      L P   +F PP  G  GGG  AKDA+GNDI  +++L  H PGDR+L +G+KGDPTY++V +D  +A+YG++AVCTHLGCVVPWN +ENKFICPCHGSQY++ G+VVRGPAPLSLAL  AT+
Sbjct:   10 VPDMGRRQFMNLLTFGTITGTALGALYPVVKYFIPPASGGTGGGAVAKDALGNDIKVSEYLAKHLPGDRSLAQGIKGDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNVSENKFICPCHGSQYDSTGKVVRGPAPLSLALVKATV 155          
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRI_PROMT (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain NATL2A) GN=petC PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.363e-50
Identity = 89/154 (57.79%), Postives = 114/154 (74.03%), Query Frame = 3
Query:  159 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHATLK 620
            T +    VP MG+RQ MNLL  G V+      L P A +F P   G  GGGT AKD +GN++ A+ WL+TH  GDR+L +GLKGDPTYL+VE +  + SYGI+A+CTHLGCVVPWNS  NK++CPCHGSQY++ G+VVRGPAPLSLA+AH +++
Sbjct:    2 TQMTTADVPSMGRRQFMNLLTFGTVTGVALGALYPVAQYFTPYRAGGGGGGTNAKDELGNNVSASGWLSTHPVGDRSLVQGLKGDPTYLIVEGEDAITSYGINAICTHLGCVVPWNSGANKYMCPCHGSQYDSTGKVVRGPAPLSLAIAHVSIE 155          
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRI_PROM1 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain NATL1A) GN=petC PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.363e-50
Identity = 89/154 (57.79%), Postives = 114/154 (74.03%), Query Frame = 3
Query:  159 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHATLK 620
            T +    VP MG+RQ MNLL  G V+      L P A +F P   G  GGGT AKD +GN++ A+ WL+TH  GDR+L +GLKGDPTYL+VE +  + SYGI+A+CTHLGCVVPWNS  NK++CPCHGSQY++ G+VVRGPAPLSLA+AH +++
Sbjct:    2 TQMTTADVPSMGRRQFMNLLTFGTVTGVALGALYPVAQYFTPYRAGGGGGGTNAKDELGNNVSASGWLSTHPVGDRSLVQGLKGDPTYLIVEGEDAITSYGINAICTHLGCVVPWNSGANKYMCPCHGSQYDSTGKVVRGPAPLSLAIAHVSIE 155          
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRI_SYNPX (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain WH8102) GN=petC PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.393e-50
Identity = 91/154 (59.09%), Postives = 113/154 (73.38%), Query Frame = 3
Query:  159 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHATLK 620
            T + +  VP MG+RQ MNLL  G+V+      L P   +F PP    AGGGTTAKD +GN I A  WL++H  GDR+L +GLKGDPTYL+VE    + SYGI+A+CTHLGCVVPWNS  NKF+CPCHGSQY+  G+VVRGPAPLSLALA+ +++
Sbjct:    2 TQLSSSDVPGMGRRQFMNLLTFGSVTGVALGALYPVVNYFIPPRAAGAGGGTTAKDELGNAITATGWLSSHPEGDRSLVQGLKGDPTYLIVEGPDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDATGKVVRGPAPLSLALANVSVE 155          
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRI_NOSSP (Cytochrome b6-f complex iron-sulfur subunit OS=Nostoc sp. (strain PCC 7906) GN=petC PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 7.493e-50
Identity = 91/144 (63.19%), Postives = 106/144 (73.61%), Query Frame = 3
Query:  180 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHA 611
            VPDMG+RQ MNLL  G V+      L P   +F PP  G AGGGTTAKD +GND+  + +L     GDR L +GLKGDPTY+VVE  + +  YGI+A+CTHLGCVVPWN AENKF CPCHGSQY+  G+VVRGPAPLSLALAHA
Sbjct:   10 VPDMGRRQFMNLLTFGTVTGVALGALYPVVKYFIPPASGGAGGGTTAKDELGNDVSLSKFLENRNAGDRALVQGLKGDPTYIVVENKQAIKDYGINAICTHLGCVVPWNVAENKFKCPCHGSQYDETGKVVRGPAPLSLALAHA 153          
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRI_NOSP7 (Cytochrome b6-f complex iron-sulfur subunit OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=petC PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.180e-49
Identity = 89/146 (60.96%), Postives = 105/146 (71.92%), Query Frame = 3
Query:  180 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHATL 617
            VPDMG+RQ MNLL  G V+      L P   +F PP  G AGGGTTAKD +GND+    +L     GDR L +GLKGDPTY+VV+  + +  YGI+A+CTHLGCVVPWN AENKF CPCHGSQY+  G+VVRGPAPLSLALAH  +
Sbjct:   10 VPDMGRRQFMNLLTFGTVTGVALGALYPVVNYFIPPATGGAGGGTTAKDELGNDVSVTKFLENRNAGDRNLVQGLKGDPTYIVVDSKEAIKDYGINAICTHLGCVVPWNVAENKFKCPCHGSQYDETGKVVRGPAPLSLALAHTNV 155          
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRI_PROM4 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9211) GN=petC PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.413e-48
Identity = 89/147 (60.54%), Postives = 109/147 (74.15%), Query Frame = 3
Query:  168 PADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAH 608
            P+D VP MG+RQ MNLL  G  +      L P A +F P   G  GGGT+AKD +GN I A+ WL+ H  GDR+L +GLKGDPTYL+VE  + + ++GI+A+CTHLGCVVPWNS  NK+ICPCHGSQY+  G+VVRGPAPLSLALAH
Sbjct:    6 PSD-VPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPITASGWLSNHPAGDRSLVQGLKGDPTYLIVEGSEAIGNFGINAICTHLGCVVPWNSGANKYICPCHGSQYDANGKVVRGPAPLSLALAH 151          
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRI_PROMA (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus GN=petC PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 9.159e-48
Identity = 88/147 (59.86%), Postives = 106/147 (72.11%), Query Frame = 3
Query:  168 PADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAH 608
            P+D VP MG+RQ MNLL  G  +      L P A FF P   G   GGTTAKD +GN + A  WL+ H  GDR+L +GLKGDPTYL+V+ D  + ++GI+A+CTHLGCVVPWNS  NK+ICPCHGSQY+  G+VVRGPAPLSLAL H
Sbjct:    6 PSD-VPSMGRRQFMNLLTFGTATGVALGALYPVANFFMPLRAGGGTGGTTAKDELGNAVTATGWLSNHPAGDRSLVQGLKGDPTYLIVDGDAAIGNFGINAICTHLGCVVPWNSGANKYICPCHGSQYDANGKVVRGPAPLSLALTH 151          
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRI_PROMS (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain AS9601) GN=petC PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.196e-47
Identity = 86/154 (55.84%), Postives = 108/154 (70.13%), Query Frame = 3
Query:  159 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHATLK 620
            T + ++ VP MG+RQ MNLL  G  +      L P A +F P   G  GGGT+AKD +GN I    WL TH  GDR+L +GLKGDPTYL+V +   +  +G++A+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH  ++
Sbjct:    2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPITKTGWLATHQAGDRSLVQGLKGDPTYLIVNEGGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIE 155          
The following BLAST results are available for this feature:
BLAST of FC869110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
UCRI_THEEB2.575e-5060.96Cytochrome b6-f complex iron-sulfur subunit OS=The... [more]
UCRI_SYNEL2.575e-5060.96Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_PROMT3.363e-5057.79Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM13.363e-5057.79Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_SYNPX4.393e-5059.09Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_NOSSP7.493e-5063.19Cytochrome b6-f complex iron-sulfur subunit OS=Nos... [more]
UCRI_NOSP72.180e-4960.96Cytochrome b6-f complex iron-sulfur subunit OS=Nos... [more]
UCRI_PROM41.413e-4860.54Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROMA9.159e-4859.86Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROMS1.196e-4755.84Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]

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Properties
Property NameValue
Genbank descriptionC31008F05EF AbioticL1 Citrus clementina cDNA clone C31008F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869110 ID=FC869110; Name=FC869110; organism=Citrus clementina; type=EST; length=629bp
CAATGGCTTCCTCCTCTTCTCTCTCCTCAGCAACTCCTTCCCAGCTATGC
TCAAGCAAGAGTGGTATGTTCTGTCCATCGAGAGCTTTTCTTGTGAAACC
AGCAAGGACCCAGATGGTGACAAAGAATCCAATGGGAATGAAGATCAAGT
GCCAGGCTACAAGTATTCCAGCTGATAGAGTGCCTGATATGGGCAAGAGG
CAGCTCATGAATTTGCTTCTCTTGGGTGCTGTTTCTCTTCCCACTGGATT
TATGTTGGTTCCTTATGCGACCTTCTTTGCCCCACCCGGTTTAGGAAGTG
CTGGTGGTGGTACTACTGCCAAGGATGCCATTGGCAATGACATCATTGCC
GCTGATTGGCTTAACACGCACGGCCCTGGGGACCGAACCCTCACCGAAGG
ATTGAAGGGAGATCCAACCTACCTTGTTGTGGAAAAAGACAAAACACTTG
CATCATATGGAATCGATGCTGTCTGCACTCACCTTGGATGTGTGGTGCCA
TGGAATTCAGCTGAGAACAAGTTCATCTGTCCCTGCCACGGATCCCAATA
CAATAACCAAGGAAGAGTTGTGAGAGGGCCTGCTCCATTGTCATTGGCAT
TGGCTCATGCCACATTGAAAATGGTAAGG
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