FC869110

Overview
NameFC869110
Unique NameFC869110
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length629
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRI_PROM9 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9312) GN=petC PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.562e-47
Identity = 85/154 (55.19%), Postives = 108/154 (70.13%), Query Frame = 3
Query:  159 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHATLK 620
            T + ++ VP MG+RQ MNLL  G  +      L P A +F P   G  GGGT+AKD +GN +    WL TH  GDR+L +GLKGDPTYL+V +   +  +G++A+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH  ++
Sbjct:    2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPVTKTGWLATHQAGDRSLVQGLKGDPTYLIVNEGGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIE 155          
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRI_PROM0 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9301) GN=petC PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.041e-47
Identity = 86/154 (55.84%), Postives = 108/154 (70.13%), Query Frame = 3
Query:  159 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHATLK 620
            T + ++ VP MG+RQ MNLL  G  +      L P A +F P   G  GGGT+AKD +GN I    WL TH  GDR+L +GLKGDPTYL+V +   +  +G++A+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH  ++
Sbjct:    2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPITKTGWLATHQAGDRSLVQGLKGDPTYLIVNEVGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIE 155          
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRI_PROM2 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9215) GN=petC PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.665e-47
Identity = 86/154 (55.84%), Postives = 107/154 (69.48%), Query Frame = 3
Query:  159 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHATLK 620
            T + +  VP MG+RQ MNLL  G  +      L P A +F P   G  GGGT+AKD +GN I    WL TH  GDR+L +GLKGDPTYL+V +   +  +G++A+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH  ++
Sbjct:    2 TQLSSKDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPITKTGWLATHQAGDRSLVQGLKGDPTYLIVNEGGGIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIE 155          
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRI_PROMP (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=petC PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.546e-47
Identity = 84/150 (56.00%), Postives = 106/150 (70.67%), Query Frame = 3
Query:  159 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAH 608
            T + ++ VP MG+RQ MNLL  G  +      L P A +F P   G  GGGT+AKD +GN +    WL +H  GDR+L +GLKGDPTYL+V  +  +  +G++A+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH
Sbjct:    2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPVTKTGWLASHQAGDRSLVQGLKGDPTYLIVNSEGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAH 151          
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRI_PROM5 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9515) GN=petC PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 5.937e-47
Identity = 84/150 (56.00%), Postives = 105/150 (70.00%), Query Frame = 3
Query:  159 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAH 608
            T + ++ VP MG+RQ MNLL  G  +      L P A +F P   G  GGGT+AKD +GN +    WL  H  GDR+L +GLKGDPTYL+V  +  +  +G++A+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH
Sbjct:    2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPVTKTGWLANHQAGDRSLVQGLKGDPTYLIVNSEGDIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAH 151          
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRIA_BIGNA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Bigelowiella natans GN=petC PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 9.809e-42
Identity = 85/157 (54.14%), Postives = 100/157 (63.69%), Query Frame = 3
Query:  141 KIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKD-KTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAH 608
            K   QA     D VPDMGKR+LMN L+L AV+         Y  +F PP  G  GG   A DA+GN + A  W  +H    R L +G+KGDPTYL+V  D  TL SYG++A+CTHLGCVVPW++A NKF CPCHGSQY   G VVRGPAP  L LAH
Sbjct:   69 KAVAQAFLSNPDMVPDMGKRKLMNNLVLAAVAPVVASAGGCYLYYFYPPQTGGGGGAVGALDALGNPVSAESWFKSHKKNARDLVQGIKGDPTYLIVNDDGSTLNSYGLNAICTHLGCVVPWDAASNKFKCPCHGSQYAPDGHVVRGPAPRPLQLAH 225          
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRI_SYNJB (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. GN=petC PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.015e-38
Identity = 76/145 (52.41%), Postives = 96/145 (66.21%), Query Frame = 3
Query:  183 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHATL 617
            P M +R L+N LL G+V +     L P   +F PP  G  G G  A+DA+G  I  ++ L TH   DR L +GLKGDPTY+V++    +A+YG++AVCTHLGCVVPWN  EN F CPCHGSQY   G+V+RGPAP SL L  AT+
Sbjct:   11 PPMSRRVLLNALLSGSVGVVVVGALYPVVKYFIPPSAGGGGEGLIAQDALGKPISVSELLATHAATDRVLAQGLKGDPTYIVIDNG-AVANYGLNAVCTHLGCVVPWNVGENLFKCPCHGSQYAANGKVIRGPAPRSLELVSATV 154          
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRI_SYNJA (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain JA-3-3Ab) GN=petC PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.261e-38
Identity = 75/145 (51.72%), Postives = 96/145 (66.21%), Query Frame = 3
Query:  183 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHATL 617
            P M +R  +N LL  +V +     L P   +F PP  G AG G  A+DA+G  I  ++ L TH   DR L +GLKGDPTY+V++    +A+YG++AVCTHLGCVVPWN+ EN F CPCHGSQY   G+V+RGPAP SL L  AT+
Sbjct:   11 PPMSRRVFLNALLSSSVGVVVVGTLYPVVKYFIPPSSGGAGEGVIAQDALGKPISVSELLATHAATDRVLAQGLKGDPTYIVIDNG-AVANYGLNAVCTHLGCVVPWNAGENLFKCPCHGSQYAANGKVIRGPAPRSLELVSATV 154          
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRI_GLOVI (Cytochrome b6-f complex iron-sulfur subunit OS=Gloeobacter violaceus GN=petC PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.422e-32
Identity = 70/152 (46.05%), Postives = 91/152 (59.87%), Query Frame = 3
Query:  171 ADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK---GDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHATL 617
            A  +P M +RQL++ +  GA++  T   L P   +F PP     G G  AKD  G DI  +  L    PG+  LT GL    GD TY+V+   K +A++GI+AVCTHLGCVVPW++   +F CPCHGS YN  G + RGPAP  LAL  AT+
Sbjct:    6 AQEIP-MSRRQLLSFVTGGAIAATTAATLYPVVLYFLPPSTAGGGEGVAAKDKEGKDISVSKLLAAATPGEPVLTLGLDVNGGDATYIVINDQKEIANFGINAVCTHLGCVVPWDNGAKQFKCPCHGSVYNADGGLERGPAPQPLALVKATV 156          
BLAST of FC869110 vs. ExPASy Swiss-Prot
Match: UCRIA_SYNY3 (Cytochrome b6-f complex iron-sulfur subunit 1 OS=Synechocystis sp. (strain PCC 6803) GN=petC1 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.017e-30
Identity = 68/146 (46.58%), Postives = 84/146 (57.53%), Query Frame = 3
Query:  183 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPG-LGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGIDAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHATL 617
            P   +RQL+N L    V++           FF PP   G AGGG  AKD +GN I A+  L    PG R L  GL GDPTYL+V++D +L S GI   CTHLGC  PWN  + +F CPCHGS+Y+  G V RGPAPL L +    +
Sbjct:   10 PSYSRRQLLNFLAGTTVAVTASAGAYAMGKFFVPPAEKGGAGGGIIAKDVLGNPIPASQIL-AEAPGTRALVAGLAGDPTYLIVKEDGSLDSIGIVDSCTHLGCTFPWNGNDQEFQCPCHGSRYHPDGSVARGPAPLPLKIVQVAV 154          
The following BLAST results are available for this feature:
BLAST of FC869110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
UCRI_PROM91.562e-4755.19Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM02.041e-4755.84Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM22.665e-4755.84Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROMP4.546e-4756.00Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM55.937e-4756.00Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRIA_BIGNA9.809e-4254.14Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRI_SYNJB1.015e-3852.41Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNJA2.261e-3851.72Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_GLOVI2.422e-3246.05Cytochrome b6-f complex iron-sulfur subunit OS=Glo... [more]
UCRIA_SYNY31.017e-3046.58Cytochrome b6-f complex iron-sulfur subunit 1 OS=S... [more]

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Properties
Property NameValue
Genbank descriptionC31008F05EF AbioticL1 Citrus clementina cDNA clone C31008F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869110 ID=FC869110; Name=FC869110; organism=Citrus clementina; type=EST; length=629bp
CAATGGCTTCCTCCTCTTCTCTCTCCTCAGCAACTCCTTCCCAGCTATGC
TCAAGCAAGAGTGGTATGTTCTGTCCATCGAGAGCTTTTCTTGTGAAACC
AGCAAGGACCCAGATGGTGACAAAGAATCCAATGGGAATGAAGATCAAGT
GCCAGGCTACAAGTATTCCAGCTGATAGAGTGCCTGATATGGGCAAGAGG
CAGCTCATGAATTTGCTTCTCTTGGGTGCTGTTTCTCTTCCCACTGGATT
TATGTTGGTTCCTTATGCGACCTTCTTTGCCCCACCCGGTTTAGGAAGTG
CTGGTGGTGGTACTACTGCCAAGGATGCCATTGGCAATGACATCATTGCC
GCTGATTGGCTTAACACGCACGGCCCTGGGGACCGAACCCTCACCGAAGG
ATTGAAGGGAGATCCAACCTACCTTGTTGTGGAAAAAGACAAAACACTTG
CATCATATGGAATCGATGCTGTCTGCACTCACCTTGGATGTGTGGTGCCA
TGGAATTCAGCTGAGAACAAGTTCATCTGTCCCTGCCACGGATCCCAATA
CAATAACCAAGGAAGAGTTGTGAGAGGGCCTGCTCCATTGTCATTGGCAT
TGGCTCATGCCACATTGAAAATGGTAAGG
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