FC869113

Overview
NameFC869113
Unique NameFC869113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14169 contig Ccv1_Contig14169:6..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869113 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 3.328e-71
Identity = 129/159 (81.13%), Postives = 137/159 (86.16%), Query Frame = 1
Query:  235 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLWLADDPDQFAELKVKELKNGR 711
            PFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS WAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYRI                +FDPL LADDP+ FAELKVKELKNGR
Sbjct:    1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGR 159          
BLAST of FC869113 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.826e-69
Identity = 134/197 (68.02%), Postives = 146/197 (74.11%), Query Frame = 1
Query:  127 VRKVGVADGGRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPLWLADDPDQFAELKVKELKNGR 711
            +R +  A  GRITM          +WYGPDR KYLGPFS QTPSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCVFPE+L K  GV+F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+   QV+LMG VEG+RI                  FDPL LADDP  FAELKVKE+KNGR
Sbjct:   32 LRDIAAATNGRITMGN-------DLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGR 221          
BLAST of FC869113 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.546e-68
Identity = 137/219 (62.56%), Postives = 154/219 (70.32%), Query Frame = 1
Query:   61 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPLWLADDPDQFAELKVKELKNGR 711
            +T+ ++ + F GQT  + +N  +R V      R TM          +WYGPDR KYLGPFS QTPSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+L K   V F E VWFKAG+QIFS+GGLDYLGNPNL+HAQSILA+   QVVLMG VEG+RI                  FDPL LADDP  FAELKVKE+KNGR
Sbjct:   10 STTVVKATPFLGQT--KNANP-LRDVVAMGSARFTMSN-------DLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGR 218          
BLAST of FC869113 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.915e-67
Identity = 121/171 (70.76%), Postives = 141/171 (82.46%), Query Frame = 1
Query:  202 WYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLWLADDPDQFAELKVKELKNGR 711
            +YGP+R K+LGP+SE  TP+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH+RWAMLGALGC  PE+L+K+G KFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQ+I+A  A QV+LMG +EGYR+                +FDPL LADDPD FAELKVKE+KNGR
Sbjct:   36 FYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGR 206          
BLAST of FC869113 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 8.482e-67
Identity = 124/171 (72.51%), Postives = 137/171 (80.12%), Query Frame = 1
Query:  202 WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLWLADDPDQFAELKVKELKNGR 711
            WYGPDR K+LGPFS  TP+YLTGEFPGDYGWDTAGLSADPETF K RELEVIH+RWA+LGALG + PE+LS   GVKFGE VWFKAGAQIFSEGGLDYLG+P LIHAQ+I+A  A QVVLMG +EGYR+                +FDPL LADDPD FAELKVKE+KNGR
Sbjct:   39 WYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGR 209          
BLAST of FC869113 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.824e-62
Identity = 121/165 (73.33%), Postives = 131/165 (79.39%), Query Frame = 1
Query:  217 RPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLWLADDPDQFAELKVKELKNGR 711
            R KYLGPFS + PSYLTGEFPGDYGWDTAGLSA PETFAKNRELEVIHSR AM  ALGC+FPE+LS  G  FGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIW  +V+LMG VEGYRI                +FD L LA+D + FAELKVKELKNGR
Sbjct:   58 RVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRI-ARGPLGEVTDPLYPGSFDSLGLAEDTEAFAELKVKELKNGR 221          
BLAST of FC869113 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.024e-60
Identity = 120/191 (62.83%), Postives = 144/191 (75.39%), Query Frame = 1
Query:  157 RITMRRTVKSTPQSI--WYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA--FDPLWLADDPDQFAELKVKELKNGR 711
            R T ++ + + P++   +YGPDR K+LGPFSE  TP YLTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH+RWA+LGALG + PE+LS+  GV+FGE VWFKAGAQIF++GGL+YLGN +LIHAQSI+A  A QVVLMG  E YR                    FDPL LADDPD FAELKVKE+KNGR
Sbjct:   16 RQTRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGR 206          
BLAST of FC869113 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 9.105e-53
Identity = 108/178 (60.67%), Postives = 129/178 (72.47%), Query Frame = 1
Query:  184 STPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS-KNGVKFGE-AVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLWLADDPDQFAELKVKELKNGR 711
            S+  + +YGPD          Q P   TGEFPGDYGWDTAGLSADPETF + RELE+IH+R  +LGALG V PE+L+ ++G+KFG+ A+WFKAGA IF +GGL+YLGNP+LIHAQ+I+A  A QVVLMG VEGYR+                AFDPL LADDPD FAELKVKE+KNGR
Sbjct:   51 SSSANQFYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGR 227          
BLAST of FC869113 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.411e-37
Identity = 77/103 (74.76%), Postives = 82/103 (79.61%), Query Frame = 1
Query:  403 EILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLWLADDPDQFAELKVKELKNGR 711
            E+L KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMG +EGYR+                AFDPL LADDP+  AELKVKE+KNGR
Sbjct:    1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKEIKNGR 103          
BLAST of FC869113 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.157e-31
Identity = 83/174 (47.70%), Postives = 99/174 (56.90%), Query Frame = 1
Query:  202 WYGPDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLWLADDPDQFAELKVKELKNGR 711
            WYGPDR  +L        + P YL GE  GDYG+D  GL   PE FAK +  E+IH+RWAMLGA G + PE L+K G   G EAVWFK GA +     L+Y G    I    +LA+ A +VVL+G  E YRI                 FDPL LA DP+Q A LKVKE+KNGR
Sbjct:   62 WYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVA-EVVLLGGAEYYRI--TNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGR 230          
The following BLAST results are available for this feature:
BLAST of FC869113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
CB22_CUCSA3.328e-7181.13Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB23_HORVU1.826e-6968.02Chlorophyll a-b binding protein of LHCII type III,... [more]
CB23_SOLLC1.546e-6862.56Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_CHLRE2.915e-6770.76Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLMO8.482e-6772.51Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO2.824e-6273.33Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB2_DUNTE2.024e-6062.83Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNSA9.105e-5360.67Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_PINSY1.411e-3774.76Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB26_ARATH1.157e-3147.70Chlorophyll a-b binding protein CP26, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionC31008F08EF AbioticL1 Citrus clementina cDNA clone C31008F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869113 ID=FC869113; Name=FC869113; organism=Citrus clementina; type=EST; length=713bp
TTCAGAGTGCGAAAAGATCCTTCAGCAACAAAAGGAAAAGCTTTCGCATA
AGAACATATGGCAACCTCTGCTATCCAACAATCAGCATTTGCTGGCCAGA
CCGCCTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGCTGAC
GGTGGCCGTATCACCATGAGGAGGACTGTCAAATCCACTCCCCAGAGCAT
CTGGTACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGAGCAAA
CACCATCATACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGATACC
GCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGA
GGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCC
CTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTGGTTC
AAGGCTGGCGCTCAAATCTTCTCTGAAGGTGGCCTTGACTATCTTGGCAA
CCCCAACCTCATTCATGCTCAGAGCATTTTGGCTATCTGGGCCTGCCAGG
TTGTGCTCATGGGTTTTGTTGAAGGATACAGAATTGGTGGCGGTCCTCTT
GGTGAAGGACTTGACCCACTTTACCCTGGTGGTGCTTTTGACCCACTTTG
GTTGGCTGATGACCCCGATCAATTTGCTGAGTTGAAGGTCAAGGAGCTCA
AGAATGGCCGTCT
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