FC869113

Overview
NameFC869113
Unique NameFC869113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869113 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.269e-18
Identity = 69/231 (29.87%), Postives = 102/231 (44.16%), Query Frame = 1
Query:   61 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQS-------IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPL-WLADDPDQFAELKVKELKNGR 711
            A+S I   AF+  ++ R  +          GGR        +TP +       +   PDRP +        P +L G  PGD+G+D  GL++DPE+   N++ E++H RWAMLGA G   PE+L+K G+      W+ AG Q +      +     L   + +L  WA       ++  G V    I                  FDPL W +  P +  EL+ KE+KNGR
Sbjct:    6 ASSTIAAVAFSSPSSRRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGR 227          
BLAST of FC869113 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.575e-18
Identity = 60/154 (38.96%), Postives = 76/154 (49.35%), Query Frame = 1
Query:  253 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLWLADDPDQFAELKVKELKNGR 711
            PSYL G  PGD+G+D+ GL   P    + +E E+IH RWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + + FVE  R                 AFDPL  + DP +F ELKVKE+KNGR
Sbjct:   56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGR 197          
BLAST of FC869113 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.281e-18
Identity = 60/174 (34.48%), Postives = 81/174 (46.55%), Query Frame = 1
Query:  211 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPL-WLADDPDQFAELKVKELKNGR 711
            PDRP +        P +L G  PGD+G+D  GL +DPE+   N + E++HSRWAMLGA G   PE L+K GV      W+ AG Q +      +     L   + +L  WA       ++  G V    I                  FDPL W +  P +  EL+ KE+KNGR
Sbjct:   63 PDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGR 227          
BLAST of FC869113 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.119e-17
Identity = 64/187 (34.22%), Postives = 89/187 (47.59%), Query Frame = 1
Query:  154 GRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLWLADDPDQFAELKVKELKNGR 711
            GR+TM         + W+ P +P+         P++L G  PGD+G+D  GL+  PE F + +E E+ H RWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + + F E  R                 AFDPL  + DP +F ELK+KE+KNGR
Sbjct:   40 GRVTM--------SAEWF-PGQPR---------PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQR---TMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGR 196          
BLAST of FC869113 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.767e-17
Identity = 46/77 (59.74%), Postives = 53/77 (68.83%), Query Frame = 1
Query:  484 LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI-XXXXXXXXXXXXXXXXAFDPLWLADDPDQFAELKVKELKNGR 711
            LDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+                 +FDPL    DP+ FAELKVKE+KNGR
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGR 77          
BLAST of FC869113 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.614e-17
Identity = 44/69 (63.77%), Postives = 50/69 (72.46%), Query Frame = 1
Query:  505 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLWLADDPDQFAELKVKELKNGR 711
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPL LA+DP+ FAELKVKE+KNGR
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGR 220          
BLAST of FC869113 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.614e-17
Identity = 44/69 (63.77%), Postives = 50/69 (72.46%), Query Frame = 1
Query:  505 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLWLADDPDQFAELKVKELKNGR 711
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPL LA+DP+ FAELKVKE+KNGR
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGR 220          
BLAST of FC869113 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.614e-17
Identity = 44/69 (63.77%), Postives = 50/69 (72.46%), Query Frame = 1
Query:  505 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLWLADDPDQFAELKVKELKNGR 711
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPL LA+DP+ FAELKVKE+KNGR
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGR 69          
BLAST of FC869113 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.614e-17
Identity = 44/69 (63.77%), Postives = 50/69 (72.46%), Query Frame = 1
Query:  505 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLWLADDPDQFAELKVKELKNGR 711
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPL LA+DP+ FAELKVKE+KNGR
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGR 218          
BLAST of FC869113 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.614e-17
Identity = 44/69 (63.77%), Postives = 50/69 (72.46%), Query Frame = 1
Query:  505 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLWLADDPDQFAELKVKELKNGR 711
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPL LA+DP+ FAELKVKE+KNGR
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGR 218          
The following BLAST results are available for this feature:
BLAST of FC869113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
CB12_SOLLC3.269e-1829.87Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB11_SOLLC5.575e-1838.96Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB12_PETHY7.281e-1834.48Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB121_HORVU2.119e-1734.22Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB21_RAPSA2.767e-1759.74Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB2F_SOLLC3.614e-1763.77Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC3.614e-1763.77Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC3.614e-1763.77Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC3.614e-1763.77Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC3.614e-1763.77Chlorophyll a-b binding protein 1A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC31008F08EF AbioticL1 Citrus clementina cDNA clone C31008F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869113 ID=FC869113; Name=FC869113; organism=Citrus clementina; type=EST; length=713bp
TTCAGAGTGCGAAAAGATCCTTCAGCAACAAAAGGAAAAGCTTTCGCATA
AGAACATATGGCAACCTCTGCTATCCAACAATCAGCATTTGCTGGCCAGA
CCGCCTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGCTGAC
GGTGGCCGTATCACCATGAGGAGGACTGTCAAATCCACTCCCCAGAGCAT
CTGGTACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGAGCAAA
CACCATCATACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGATACC
GCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGA
GGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCC
CTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTGGTTC
AAGGCTGGCGCTCAAATCTTCTCTGAAGGTGGCCTTGACTATCTTGGCAA
CCCCAACCTCATTCATGCTCAGAGCATTTTGGCTATCTGGGCCTGCCAGG
TTGTGCTCATGGGTTTTGTTGAAGGATACAGAATTGGTGGCGGTCCTCTT
GGTGAAGGACTTGACCCACTTTACCCTGGTGGTGCTTTTGACCCACTTTG
GTTGGCTGATGACCCCGATCAATTTGCTGAGTTGAAGGTCAAGGAGCTCA
AGAATGGCCGTCT
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