FC869113
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC869113 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.269e-18 Identity = 69/231 (29.87%), Postives = 102/231 (44.16%), Query Frame = 1 Query: 61 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQS-------IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPL-WLADDPDQFAELKVKELKNGR 711 A+S I AF+ ++ R + GGR +TP + + PDRP + P +L G PGD+G+D GL++DPE+ N++ E++H RWAMLGA G PE+L+K G+ W+ AG Q + + L + +L WA ++ G V I FDPL W + P + EL+ KE+KNGR Sbjct: 6 ASSTIAAVAFSSPSSRRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGR 227
BLAST of FC869113 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.575e-18 Identity = 60/154 (38.96%), Postives = 76/154 (49.35%), Query Frame = 1 Query: 253 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLWLADDPDQFAELKVKELKNGR 711 PSYL G PGD+G+D+ GL P + +E E+IH RWAML G + PE L G W KA GG YLG P + ++ I A + + + FVE R AFDPL + DP +F ELKVKE+KNGR Sbjct: 56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGR 197
BLAST of FC869113 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 7.281e-18 Identity = 60/174 (34.48%), Postives = 81/174 (46.55%), Query Frame = 1 Query: 211 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPL-WLADDPDQFAELKVKELKNGR 711 PDRP + P +L G PGD+G+D GL +DPE+ N + E++HSRWAMLGA G PE L+K GV W+ AG Q + + L + +L WA ++ G V I FDPL W + P + EL+ KE+KNGR Sbjct: 63 PDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGR 227
BLAST of FC869113 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.119e-17 Identity = 64/187 (34.22%), Postives = 89/187 (47.59%), Query Frame = 1 Query: 154 GRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLWLADDPDQFAELKVKELKNGR 711 GR+TM + W+ P +P+ P++L G PGD+G+D GL+ PE F + +E E+ H RWAML G + PE L G W KA +G YLGNP + ++ I A + + + F E R AFDPL + DP +F ELK+KE+KNGR Sbjct: 40 GRVTM--------SAEWF-PGQPR---------PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQR---TMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGR 196
BLAST of FC869113 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.767e-17 Identity = 46/77 (59.74%), Postives = 53/77 (68.83%), Query Frame = 1 Query: 484 LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI-XXXXXXXXXXXXXXXXAFDPLWLADDPDQFAELKVKELKNGR 711 LDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+ +FDPL DP+ FAELKVKE+KNGR Sbjct: 1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGR 77
BLAST of FC869113 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.614e-17 Identity = 44/69 (63.77%), Postives = 50/69 (72.46%), Query Frame = 1 Query: 505 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLWLADDPDQFAELKVKELKNGR 711 +L+HAQSILAIWACQVVLMG VEGYRI +FDPL LA+DP+ FAELKVKE+KNGR Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGR 220
BLAST of FC869113 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.614e-17 Identity = 44/69 (63.77%), Postives = 50/69 (72.46%), Query Frame = 1 Query: 505 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLWLADDPDQFAELKVKELKNGR 711 +L+HAQSILAIWACQVVLMG VEGYRI +FDPL LA+DP+ FAELKVKE+KNGR Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGR 220
BLAST of FC869113 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.614e-17 Identity = 44/69 (63.77%), Postives = 50/69 (72.46%), Query Frame = 1 Query: 505 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLWLADDPDQFAELKVKELKNGR 711 +L+HAQSILAIWACQVVLMG VEGYRI +FDPL LA+DP+ FAELKVKE+KNGR Sbjct: 1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGR 69
BLAST of FC869113 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.614e-17 Identity = 44/69 (63.77%), Postives = 50/69 (72.46%), Query Frame = 1 Query: 505 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLWLADDPDQFAELKVKELKNGR 711 +L+HAQSILAIWACQVVLMG VEGYRI +FDPL LA+DP+ FAELKVKE+KNGR Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGR 218
BLAST of FC869113 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.614e-17 Identity = 44/69 (63.77%), Postives = 50/69 (72.46%), Query Frame = 1 Query: 505 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLWLADDPDQFAELKVKELKNGR 711 +L+HAQSILAIWACQVVLMG VEGYRI +FDPL LA+DP+ FAELKVKE+KNGR Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGR 218 The following BLAST results are available for this feature:
BLAST of FC869113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 74
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Sequences
The
following sequences are available for this feature:
EST sequence >FC869113 ID=FC869113; Name=FC869113; organism=Citrus clementina; type=EST; length=713bpback to top |