FC869115

Overview
NameFC869115
Unique NameFC869115
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length408
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDHM_BRANA (Malate dehydrogenase, mitochondrial OS=Brassica napus GN=MDH PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.947e-32
Identity = 67/98 (68.37%), Postives = 76/98 (77.55%), Query Frame = 3
Query:  114 AKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSILHLYDVVNTPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            + G     KVAILGAAGGIGQPLA+LMK+NPLVS L LYD+ NTPGV AD+ H +T + V G++G   L  AL G DLVIIPAGVPRKPGMTRDDLFN
Sbjct:   23 SSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSQVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFN 120          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDHM_CITLA (Malate dehydrogenase, mitochondrial OS=Citrullus lanatus GN=MMDH PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.260e-31
Identity = 64/90 (71.11%), Postives = 75/90 (83.33%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKINPLVSILHLYDVVNTPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+  TPGV AD+ H +T + V G++G+ QL  AL G D+VIIPAGVPRKPGMTRDDLFN
Sbjct:   36 KVAVLGAAGGIGQPLALLMKLNPLVSKLALYDIAGTPGVAADVGHVNTRSEVTGYVGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFN 125          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDHM_EUCGU (Malate dehydrogenase, mitochondrial OS=Eucalyptus gunnii GN=MDH PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.951e-31
Identity = 64/90 (71.11%), Postives = 75/90 (83.33%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKINPLVSILHLYDVVNTPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+  TPGV AD+ H +T + V G++G+ QL  AL G D+VIIPAGVPRKPGMTRDDLFN
Sbjct:   36 KVAVLGAAGGIGQPLALLMKLNPLVSQLALYDIAGTPGVAADVGHINTRSEVAGYVGEEQLGQALEGSDVVIIPAGVPRKPGMTRDDLFN 125          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDHM2_ARATH (Malate dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=At3g15020 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.855e-31
Identity = 64/90 (71.11%), Postives = 73/90 (81.11%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKINPLVSILHLYDVVNTPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KV ILGAAGGIGQPL++LMK+NPLVS L LYD+ NTPGV AD+ H +T + V G++G   L  AL G DLVIIPAGVPRKPGMTRDDLFN
Sbjct:   31 KVVILGAAGGIGQPLSLLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSQVSGYMGDDDLGKALEGADLVIIPAGVPRKPGMTRDDLFN 120          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDHM_MACFA (Malate dehydrogenase, mitochondrial OS=Macaca fascicularis GN=MDH2 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.122e-30
Identity = 62/90 (68.89%), Postives = 77/90 (85.56%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKINPLVSILHLYDVVNTPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH +T AVV+G+LG  QL + L G D+V+IPAGVPRKPGMTRDDLFN
Sbjct:   26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAVVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFN 115          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDHM_PONAB (Malate dehydrogenase, mitochondrial OS=Pongo abelii GN=MDH2 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.263e-30
Identity = 61/90 (67.78%), Postives = 76/90 (84.44%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKINPLVSILHLYDVVNTPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH +T A V+G+LG  QL + L G D+V+IPAGVPRKPGMTRDDLFN
Sbjct:   26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFN 115          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDHM_PIG (Malate dehydrogenase, mitochondrial OS=Sus scrofa GN=MDH2 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 3.263e-30
Identity = 61/90 (67.78%), Postives = 76/90 (84.44%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKINPLVSILHLYDVVNTPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH +T A V+G+LG  QL + L G D+V+IPAGVPRKPGMTRDDLFN
Sbjct:   26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFN 115          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDHM_HUMAN (Malate dehydrogenase, mitochondrial OS=Homo sapiens GN=MDH2 PE=1 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 3.263e-30
Identity = 61/90 (67.78%), Postives = 76/90 (84.44%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKINPLVSILHLYDVVNTPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH +T A V+G+LG  QL + L G D+V+IPAGVPRKPGMTRDDLFN
Sbjct:   26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAAVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFN 115          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDHM_BOVIN (Malate dehydrogenase, mitochondrial OS=Bos taurus GN=MDH2 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.263e-30
Identity = 61/90 (67.78%), Postives = 76/90 (84.44%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKINPLVSILHLYDVVNTPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH +T A V+G+LG  QL + L G D+V+IPAGVPRKPGMTRDDLFN
Sbjct:   26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFN 115          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDHM_RAT (Malate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Mdh2 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 7.270e-30
Identity = 61/90 (67.78%), Postives = 76/90 (84.44%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKINPLVSILHLYDVVNTPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH +T A V+G+LG  QL + L G D+V+IPAGVPRKPGMTRDDLFN
Sbjct:   26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRANVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFN 115          
The following BLAST results are available for this feature:
BLAST of FC869115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
MDHM_BRANA5.947e-3268.37Malate dehydrogenase, mitochondrial OS=Brassica na... [more]
MDHM_CITLA2.260e-3171.11Malate dehydrogenase, mitochondrial OS=Citrullus l... [more]
MDHM_EUCGU2.951e-3171.11Malate dehydrogenase, mitochondrial OS=Eucalyptus ... [more]
MDHM2_ARATH3.855e-3171.11Malate dehydrogenase 2, mitochondrial OS=Arabidops... [more]
MDHM_MACFA1.122e-3068.89Malate dehydrogenase, mitochondrial OS=Macaca fasc... [more]
MDHM_PONAB3.263e-3067.78Malate dehydrogenase, mitochondrial OS=Pongo abeli... [more]
MDHM_PIG3.263e-3067.78Malate dehydrogenase, mitochondrial OS=Sus scrofa ... [more]
MDHM_HUMAN3.263e-3067.78Malate dehydrogenase, mitochondrial OS=Homo sapien... [more]
MDHM_BOVIN3.263e-3067.78Malate dehydrogenase, mitochondrial OS=Bos taurus ... [more]
MDHM_RAT7.270e-3067.78Malate dehydrogenase, mitochondrial OS=Rattus norv... [more]

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Properties
Property NameValue
Genbank descriptionC31008F10EF AbioticL1 Citrus clementina cDNA clone C31008F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869115 ID=FC869115; Name=FC869115; organism=Citrus clementina; type=EST; length=408bp
AAATGGAGTTTAGCTCAGAGGCTAATCAGCGCATTTTTCCCATCTCTGCT
CATCATTACCCTCCAAATCTCCAGATGGAGGAGAATTCTTGCTTGAGGCA
AGCTAAGTGCCGGGCAAAAGGCGGGGCAGCTGGATTCAAAGTAGCCATCT
TGGGTGCTGCTGGAGGCATTGGCCAACCCCTTGCAATGCTAATGAAGATA
AACCCCCTGGTCTCAATCCTTCACCTCTATGATGTTGTCAATACCCCTGG
TGTCACTGCTGATATTAGCCATACGGACACCGGCGCTGTGGTACGGGGTT
TCCTAGGCCAGCCACAGCTTGAGAATGCTCTCACAGGGATGGACCTTGTC
ATTATCCCTGCCGGCGTTCCGAGGAAGCCTGGAATGACCAGGGATGATCT
TTTCAATA
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