FC869115

Overview
NameFC869115
Unique NameFC869115
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length408
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_ECO5E (Malate dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.680e-18
Identity = 52/92 (56.52%), Postives = 62/92 (67.39%), Query Frame = 3 
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH  T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFN 92
[Close]
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_ECO57 (Malate dehydrogenase OS=Escherichia coli O157:H7 GN=mdh PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.680e-18
Identity = 52/92 (56.52%), Postives = 62/92 (67.39%), Query Frame = 3 
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH  T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFN 92
[Close]
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_ECO55 (Malate dehydrogenase OS=Escherichia coli (strain 55989 / EAEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.680e-18
Identity = 52/92 (56.52%), Postives = 62/92 (67.39%), Query Frame = 3 
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH  T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFN 92
[Close]
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_ECO45 (Malate dehydrogenase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.680e-18
Identity = 52/92 (56.52%), Postives = 62/92 (67.39%), Query Frame = 3 
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH  T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFN 92
[Close]
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_ECO27 (Malate dehydrogenase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.680e-18
Identity = 52/92 (56.52%), Postives = 62/92 (67.39%), Query Frame = 3 
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH  T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFN 92
[Close]
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_ECO24 (Malate dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.680e-18
Identity = 52/92 (56.52%), Postives = 62/92 (67.39%), Query Frame = 3 
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH  T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFN 92
[Close]
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_CITK8 (Malate dehydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=mdh PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.680e-18
Identity = 52/92 (56.52%), Postives = 62/92 (67.39%), Query Frame = 3 
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH  T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFN 92
[Close]
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_SERP5 (Malate dehydrogenase OS=Serratia proteamaculans (strain 568) GN=mdh PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.194e-18
Identity = 52/92 (56.52%), Postives = 62/92 (67.39%), Query Frame = 3 
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH  T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALHGADVVLISAGVARKPGMDRSDLFN 92
[Close]
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_KLEP7 (Malate dehydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=mdh PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.194e-18
Identity = 52/92 (56.52%), Postives = 62/92 (67.39%), Query Frame = 3 
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH  T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTDVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFN 92
[Close]
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_KLEP3 (Malate dehydrogenase OS=Klebsiella pneumoniae (strain 342) GN=mdh PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.194e-18
Identity = 52/92 (56.52%), Postives = 62/92 (67.39%), Query Frame = 3 
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH  T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTDVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFN 92
The following BLAST results are available for this feature:
BLAST of FC869115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
MDH_ECO5E1.680e-1856.52Malate dehydrogenase OS=Escherichia coli O157:H7 (... [more]
MDH_ECO571.680e-1856.52Malate dehydrogenase OS=Escherichia coli O157:H7 G... [more]
MDH_ECO551.680e-1856.52Malate dehydrogenase OS=Escherichia coli (strain 5... [more]
MDH_ECO451.680e-1856.52Malate dehydrogenase OS=Escherichia coli O45:K1 (s... [more]
MDH_ECO271.680e-1856.52Malate dehydrogenase OS=Escherichia coli O127:H6 (... [more]
MDH_ECO241.680e-1856.52Malate dehydrogenase OS=Escherichia coli O139:H28 ... [more]
MDH_CITK81.680e-1856.52Malate dehydrogenase OS=Citrobacter koseri (strain... [more]
MDH_SERP52.194e-1856.52Malate dehydrogenase OS=Serratia proteamaculans (s... [more]
MDH_KLEP72.194e-1856.52Malate dehydrogenase OS=Klebsiella pneumoniae subs... [more]
MDH_KLEP32.194e-1856.52Malate dehydrogenase OS=Klebsiella pneumoniae (str... [more]

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Properties
Property NameValue
Genbank descriptionC31008F10EF AbioticL1 Citrus clementina cDNA clone C31008F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869115 ID=FC869115; Name=FC869115; organism=Citrus clementina; type=EST; length=408bp
AAATGGAGTTTAGCTCAGAGGCTAATCAGCGCATTTTTCCCATCTCTGCT
CATCATTACCCTCCAAATCTCCAGATGGAGGAGAATTCTTGCTTGAGGCA
AGCTAAGTGCCGGGCAAAAGGCGGGGCAGCTGGATTCAAAGTAGCCATCT
TGGGTGCTGCTGGAGGCATTGGCCAACCCCTTGCAATGCTAATGAAGATA
AACCCCCTGGTCTCAATCCTTCACCTCTATGATGTTGTCAATACCCCTGG
TGTCACTGCTGATATTAGCCATACGGACACCGGCGCTGTGGTACGGGGTT
TCCTAGGCCAGCCACAGCTTGAGAATGCTCTCACAGGGATGGACCTTGTC
ATTATCCCTGCCGGCGTTCCGAGGAAGCCTGGAATGACCAGGGATGATCT
TTTCAATA
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