FC869115

Overview
NameFC869115
Unique NameFC869115
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length408
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_SHEHH (Malate dehydrogenase OS=Shewanella halifaxensis (strain HAW-EB4) GN=mdh PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.865e-18
Identity = 52/92 (56.52%), Postives = 61/92 (66.30%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVNT-PGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+    PGV  D+SH  T   V+GF G+     AL G D+V+I AGV RKPGM R DLFN
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVIPGVAVDLSHIPTAVEVKGFAGEDPTA-ALEGADVVLISAGVARKPGMDRSDLFN 92          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_SALTY (Malate dehydrogenase OS=Salmonella typhimurium GN=mdh PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.865e-18
Identity = 52/92 (56.52%), Postives = 62/92 (67.39%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH  T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFN 92          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_SALTI (Malate dehydrogenase OS=Salmonella typhi GN=mdh PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.865e-18
Identity = 52/92 (56.52%), Postives = 62/92 (67.39%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH  T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFN 92          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_SALSV (Malate dehydrogenase OS=Salmonella schwarzengrund (strain CVM19633) GN=mdh PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.865e-18
Identity = 52/92 (56.52%), Postives = 62/92 (67.39%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH  T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFN 92          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_SALPK (Malate dehydrogenase OS=Salmonella paratyphi A (strain AKU_12601) GN=mdh PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.865e-18
Identity = 52/92 (56.52%), Postives = 62/92 (67.39%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH  T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFN 92          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_SALPC (Malate dehydrogenase OS=Salmonella paratyphi C (strain RKS4594) GN=mdh PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.865e-18
Identity = 52/92 (56.52%), Postives = 62/92 (67.39%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH  T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFN 92          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_SALPB (Malate dehydrogenase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=mdh PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.865e-18
Identity = 52/92 (56.52%), Postives = 62/92 (67.39%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH  T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFN 92          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_SALPA (Malate dehydrogenase OS=Salmonella paratyphi A GN=mdh PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.865e-18
Identity = 52/92 (56.52%), Postives = 62/92 (67.39%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH  T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFN 92          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_SALNS (Malate dehydrogenase OS=Salmonella newport (strain SL254) GN=mdh PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.865e-18
Identity = 52/92 (56.52%), Postives = 62/92 (67.39%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH  T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFN 92          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_SALHS (Malate dehydrogenase OS=Salmonella heidelberg (strain SL476) GN=mdh PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.865e-18
Identity = 52/92 (56.52%), Postives = 62/92 (67.39%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH  T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFN 92          
The following BLAST results are available for this feature:
BLAST of FC869115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
MDH_SHEHH2.865e-1856.52Malate dehydrogenase OS=Shewanella halifaxensis (s... [more]
MDH_SALTY2.865e-1856.52Malate dehydrogenase OS=Salmonella typhimurium GN=... [more]
MDH_SALTI2.865e-1856.52Malate dehydrogenase OS=Salmonella typhi GN=mdh PE... [more]
MDH_SALSV2.865e-1856.52Malate dehydrogenase OS=Salmonella schwarzengrund ... [more]
MDH_SALPK2.865e-1856.52Malate dehydrogenase OS=Salmonella paratyphi A (st... [more]
MDH_SALPC2.865e-1856.52Malate dehydrogenase OS=Salmonella paratyphi C (st... [more]
MDH_SALPB2.865e-1856.52Malate dehydrogenase OS=Salmonella paratyphi B (st... [more]
MDH_SALPA2.865e-1856.52Malate dehydrogenase OS=Salmonella paratyphi A GN=... [more]
MDH_SALNS2.865e-1856.52Malate dehydrogenase OS=Salmonella newport (strain... [more]
MDH_SALHS2.865e-1856.52Malate dehydrogenase OS=Salmonella heidelberg (str... [more]

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Properties
Property NameValue
Genbank descriptionC31008F10EF AbioticL1 Citrus clementina cDNA clone C31008F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869115 ID=FC869115; Name=FC869115; organism=Citrus clementina; type=EST; length=408bp
AAATGGAGTTTAGCTCAGAGGCTAATCAGCGCATTTTTCCCATCTCTGCT
CATCATTACCCTCCAAATCTCCAGATGGAGGAGAATTCTTGCTTGAGGCA
AGCTAAGTGCCGGGCAAAAGGCGGGGCAGCTGGATTCAAAGTAGCCATCT
TGGGTGCTGCTGGAGGCATTGGCCAACCCCTTGCAATGCTAATGAAGATA
AACCCCCTGGTCTCAATCCTTCACCTCTATGATGTTGTCAATACCCCTGG
TGTCACTGCTGATATTAGCCATACGGACACCGGCGCTGTGGTACGGGGTT
TCCTAGGCCAGCCACAGCTTGAGAATGCTCTCACAGGGATGGACCTTGTC
ATTATCCCTGCCGGCGTTCCGAGGAAGCCTGGAATGACCAGGGATGATCT
TTTCAATA
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