FC869115

Overview
NameFC869115
Unique NameFC869115
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length408
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_SALG2 (Malate dehydrogenase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=mdh PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.865e-18
Identity = 52/92 (56.52%), Postives = 62/92 (67.39%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH  T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFN 92          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_SALEP (Malate dehydrogenase OS=Salmonella enteritidis PT4 (strain P125109) GN=mdh PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.865e-18
Identity = 52/92 (56.52%), Postives = 62/92 (67.39%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH  T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFN 92          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_SALCH (Malate dehydrogenase OS=Salmonella choleraesuis GN=mdh PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.865e-18
Identity = 52/92 (56.52%), Postives = 62/92 (67.39%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH  T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFN 92          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_SALAR (Malate dehydrogenase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=mdh PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.865e-18
Identity = 52/92 (56.52%), Postives = 62/92 (67.39%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH  T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFN 92          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_SALA4 (Malate dehydrogenase OS=Salmonella agona (strain SL483) GN=mdh PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.865e-18
Identity = 52/92 (56.52%), Postives = 62/92 (67.39%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH  T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFN 92          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_ACTPJ (Malate dehydrogenase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=mdh PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.865e-18
Identity = 53/92 (57.61%), Postives = 64/92 (69.57%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ LA+L+K+  P+ + L LYD+   TPG+  DISH  T     G+ G+   E AL G +LVII AGV RKPGMTR DLFN
Sbjct:    2 KVALLGAAGGIGQTLALLLKLRLPVGTDLALYDISPVTPGIAVDISHIPTSVSAVGYSGEDPSE-ALKGANLVIITAGVARKPGMTRADLFN 92          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_ACTP7 (Malate dehydrogenase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=mdh PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.865e-18
Identity = 53/92 (57.61%), Postives = 64/92 (69.57%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ LA+L+K+  P+ + L LYD+   TPG+  DISH  T     G+ G+   E AL G +LVII AGV RKPGMTR DLFN
Sbjct:    2 KVALLGAAGGIGQTLALLLKLRLPVGTDLALYDISPVTPGIAVDISHIPTSVSAVGYSGEDPSE-ALKGANLVIITAGVARKPGMTRADLFN 92          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_ACTP2 (Malate dehydrogenase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=mdh PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.865e-18
Identity = 53/92 (57.61%), Postives = 64/92 (69.57%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ LA+L+K+  P+ + L LYD+   TPG+  DISH  T     G+ G+   E AL G +LVII AGV RKPGMTR DLFN
Sbjct:    2 KVALLGAAGGIGQTLALLLKLRLPVGTDLALYDISPVTPGIAVDISHIPTSVSAVGYSGEDPSE-ALKGANLVIITAGVARKPGMTRADLFN 92          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_EDWI9 (Malate dehydrogenase OS=Edwardsiella ictaluri (strain 93-146) GN=mdh PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.742e-18
Identity = 53/92 (57.61%), Postives = 61/92 (66.30%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH  T   V GF G+     AL G D+V+I AGV RKPGM R DLFN
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKVCGFGGE-DASPALVGADIVLISAGVARKPGMDRSDLFN 92          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_VIBFM (Malate dehydrogenase OS=Vibrio fischeri (strain MJ11) GN=mdh PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.887e-18
Identity = 51/92 (55.43%), Postives = 63/92 (68.48%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA++GAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH  T   ++G+ G+     AL G D+V+I AGV RKPGM R DLFN
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYCGEDPTP-ALEGADVVLISAGVARKPGMDRSDLFN 92          
The following BLAST results are available for this feature:
BLAST of FC869115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
MDH_SALG22.865e-1856.52Malate dehydrogenase OS=Salmonella gallinarum (str... [more]
MDH_SALEP2.865e-1856.52Malate dehydrogenase OS=Salmonella enteritidis PT4... [more]
MDH_SALCH2.865e-1856.52Malate dehydrogenase OS=Salmonella choleraesuis GN... [more]
MDH_SALAR2.865e-1856.52Malate dehydrogenase OS=Salmonella arizonae (strai... [more]
MDH_SALA42.865e-1856.52Malate dehydrogenase OS=Salmonella agona (strain S... [more]
MDH_ACTPJ2.865e-1857.61Malate dehydrogenase OS=Actinobacillus pleuropneum... [more]
MDH_ACTP72.865e-1857.61Malate dehydrogenase OS=Actinobacillus pleuropneum... [more]
MDH_ACTP22.865e-1857.61Malate dehydrogenase OS=Actinobacillus pleuropneum... [more]
MDH_EDWI93.742e-1857.61Malate dehydrogenase OS=Edwardsiella ictaluri (str... [more]
MDH_VIBFM4.887e-1855.43Malate dehydrogenase OS=Vibrio fischeri (strain MJ... [more]

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Properties
Property NameValue
Genbank descriptionC31008F10EF AbioticL1 Citrus clementina cDNA clone C31008F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869115 ID=FC869115; Name=FC869115; organism=Citrus clementina; type=EST; length=408bp
AAATGGAGTTTAGCTCAGAGGCTAATCAGCGCATTTTTCCCATCTCTGCT
CATCATTACCCTCCAAATCTCCAGATGGAGGAGAATTCTTGCTTGAGGCA
AGCTAAGTGCCGGGCAAAAGGCGGGGCAGCTGGATTCAAAGTAGCCATCT
TGGGTGCTGCTGGAGGCATTGGCCAACCCCTTGCAATGCTAATGAAGATA
AACCCCCTGGTCTCAATCCTTCACCTCTATGATGTTGTCAATACCCCTGG
TGTCACTGCTGATATTAGCCATACGGACACCGGCGCTGTGGTACGGGGTT
TCCTAGGCCAGCCACAGCTTGAGAATGCTCTCACAGGGATGGACCTTGTC
ATTATCCCTGCCGGCGTTCCGAGGAAGCCTGGAATGACCAGGGATGATCT
TTTCAATA
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