FC869115

Overview
NameFC869115
Unique NameFC869115
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length408
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_VIBF1 (Malate dehydrogenase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=mdh PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.887e-18
Identity = 51/92 (55.43%), Postives = 63/92 (68.48%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA++GAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH  T   ++G+ G+     AL G D+V+I AGV RKPGM R DLFN
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYCGEDPTP-ALEGADVVLISAGVARKPGMDRSDLFN 92          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_SHEDO (Malate dehydrogenase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=mdh PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.887e-18
Identity = 51/92 (55.43%), Postives = 61/92 (66.30%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH  T   ++GF G+     AL   D+V+I AGV RKPGM R DLFN
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEIKGFAGEDPTP-ALVDADVVLISAGVARKPGMDRSDLFN 92          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_ALISL (Malate dehydrogenase OS=Aliivibrio salmonicida (strain LFI1238) GN=mdh PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.887e-18
Identity = 51/92 (55.43%), Postives = 63/92 (68.48%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA++GAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH  T   ++G+ G+     AL G D+V+I AGV RKPGM R DLFN
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYCGEDPTP-ALEGADVVLISAGVARKPGMDRSDLFN 92          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_VIBCH (Malate dehydrogenase OS=Vibrio cholerae GN=mdh PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 6.383e-18
Identity = 50/92 (54.35%), Postives = 63/92 (68.48%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA++GAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH  T   ++G+ G+     AL G D+V++ AGV RKPGM R DLFN
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVTIKGYAGEDPTP-ALEGADVVLVSAGVARKPGMDRADLFN 92          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_SALDC (Malate dehydrogenase OS=Salmonella dublin (strain CT_02021853) GN=mdh PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.383e-18
Identity = 51/92 (55.43%), Postives = 62/92 (67.39%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH  T   ++GF G+     AL G D+V+I AGV R+PGM R DLFN
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARRPGMDRSDLFN 92          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_PROMH (Malate dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=mdh PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.383e-18
Identity = 53/92 (57.61%), Postives = 62/92 (67.39%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH  T   V+GF G+     AL   D+V+I AGV RKPGM R DLFN
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPAGSELSLYDIAPVTPGVAADLSHIPTQVRVKGFAGEDP-SPALKDADVVLISAGVARKPGMDRSDLFN 92          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_MORS2 (Malate dehydrogenase OS=Moritella sp. (strain 2D2) GN=mdh PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.383e-18
Identity = 52/92 (56.52%), Postives = 60/92 (65.22%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH  T   + GF G      AL G D+V+I AGV RKPGM R DLFN
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTDVTITGFSGIDPTA-ALVGADVVLISAGVARKPGMDRSDLFN 92          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_ECOLU (Malate dehydrogenase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.383e-18
Identity = 51/92 (55.43%), Postives = 62/92 (67.39%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH  T   ++GF G+     AL G ++V+I AGV RKPGM R DLFN
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGANVVLISAGVARKPGMDRSDLFN 92          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_VIBVY (Malate dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=mdh PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.337e-18
Identity = 51/92 (55.43%), Postives = 63/92 (68.48%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA++GAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH  T   ++G+ G+     AL G D+V+I AGV RKPGM R DLFN
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYAGEDPTP-ALEGADVVLISAGVARKPGMDRADLFN 92          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_VIBVU (Malate dehydrogenase OS=Vibrio vulnificus GN=mdh PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.337e-18
Identity = 51/92 (55.43%), Postives = 63/92 (68.48%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA++GAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH  T   ++G+ G+     AL G D+V+I AGV RKPGM R DLFN
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTHVSIKGYAGEDPTP-ALEGADVVLISAGVARKPGMDRADLFN 92          
The following BLAST results are available for this feature:
BLAST of FC869115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
MDH_VIBF14.887e-1855.43Malate dehydrogenase OS=Vibrio fischeri (strain AT... [more]
MDH_SHEDO4.887e-1855.43Malate dehydrogenase OS=Shewanella denitrificans (... [more]
MDH_ALISL4.887e-1855.43Malate dehydrogenase OS=Aliivibrio salmonicida (st... [more]
MDH_VIBCH6.383e-1854.35Malate dehydrogenase OS=Vibrio cholerae GN=mdh PE=... [more]
MDH_SALDC6.383e-1855.43Malate dehydrogenase OS=Salmonella dublin (strain ... [more]
MDH_PROMH6.383e-1857.61Malate dehydrogenase OS=Proteus mirabilis (strain ... [more]
MDH_MORS26.383e-1856.52Malate dehydrogenase OS=Moritella sp. (strain 2D2)... [more]
MDH_ECOLU6.383e-1855.43Malate dehydrogenase OS=Escherichia coli O17:K52:H... [more]
MDH_VIBVY8.337e-1855.43Malate dehydrogenase OS=Vibrio vulnificus (strain ... [more]
MDH_VIBVU8.337e-1855.43Malate dehydrogenase OS=Vibrio vulnificus GN=mdh P... [more]

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Properties
Property NameValue
Genbank descriptionC31008F10EF AbioticL1 Citrus clementina cDNA clone C31008F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869115 ID=FC869115; Name=FC869115; organism=Citrus clementina; type=EST; length=408bp
AAATGGAGTTTAGCTCAGAGGCTAATCAGCGCATTTTTCCCATCTCTGCT
CATCATTACCCTCCAAATCTCCAGATGGAGGAGAATTCTTGCTTGAGGCA
AGCTAAGTGCCGGGCAAAAGGCGGGGCAGCTGGATTCAAAGTAGCCATCT
TGGGTGCTGCTGGAGGCATTGGCCAACCCCTTGCAATGCTAATGAAGATA
AACCCCCTGGTCTCAATCCTTCACCTCTATGATGTTGTCAATACCCCTGG
TGTCACTGCTGATATTAGCCATACGGACACCGGCGCTGTGGTACGGGGTT
TCCTAGGCCAGCCACAGCTTGAGAATGCTCTCACAGGGATGGACCTTGTC
ATTATCCCTGCCGGCGTTCCGAGGAAGCCTGGAATGACCAGGGATGATCT
TTTCAATA
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