FC869115

Overview
NameFC869115
Unique NameFC869115
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length408
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig98 contig Ccv1_Contig98:99..506. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_COLP3 (Malate dehydrogenase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=mdh PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.795e-20
Identity = 55/92 (59.78%), Postives = 64/92 (69.57%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVNT-PGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ L++L+K   P  S L LYDV    PGV  D+SH  T   V GF G+  L  ALTG D+V+IPAG+PRKPGM R DLFN
Sbjct:    2 KVAVLGAAGGIGQALSLLLKTQLPAGSELSLYDVAPVVPGVAVDLSHIPTDVKVAGF-GRDDLNGALTGADIVLIPAGMPRKPGMDRADLFN 92          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_MANSM (Malate dehydrogenase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=mdh PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.907e-20
Identity = 56/91 (61.54%), Postives = 63/91 (69.23%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLF 404
            KVA+LGAAGGIGQ LA+L+K+  P  S L LYDV   TPGV  D+SH  T  VV GF G    E AL G D+V+I AGV RKPGMTR DLF
Sbjct:    2 KVAVLGAAGGIGQALALLLKLQLPAGSSLSLYDVAPVTPGVAKDLSHIPTDVVVEGFAGTDPSE-ALKGADIVLISAGVARKPGMTRADLF 91          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_ALTMD (Malate dehydrogenase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=mdh PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.907e-20
Identity = 54/92 (58.70%), Postives = 64/92 (69.57%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVNT-PGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ L++L+K   P  S L LYDV    PGV  D+SH  T   V G  G+  L +ALTG D+V+IPAG+PRKPGM R DLFN
Sbjct:    2 KVAVLGAAGGIGQALSLLLKTQLPAGSDLALYDVAPVVPGVAVDLSHIPTAVKVTGH-GKDDLADALTGADVVLIPAGMPRKPGMDRSDLFN 92          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_PASMU (Malate dehydrogenase OS=Pasteurella multocida GN=mdh PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.163e-19
Identity = 54/92 (58.70%), Postives = 64/92 (69.57%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ LA+L+K+  P  S L LYD+   TPGV AD+SH  T   V+GF G+     AL G D+V+I AGV RKPGM R DLFN
Sbjct:    2 KVAVLGAAGGIGQALALLLKLQLPAGSELSLYDIAPVTPGVAADVSHIPTAVKVQGFAGEDPTP-ALQGADVVLISAGVARKPGMDRSDLFN 92          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_HAES2 (Malate dehydrogenase OS=Haemophilus somnus (strain 2336) GN=mdh PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.984e-19
Identity = 54/95 (56.84%), Postives = 66/95 (69.47%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQ---PQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            K+A+LGAAGGIGQ LA+L+K+  P  S L LYD+   TPGV AD+SH  T   ++GF G+   P LENA    D+V+I AGV RKPGM R DLFN
Sbjct:    2 KIAVLGAAGGIGQALALLLKLQLPAGSELSLYDIAPVTPGVAADVSHIPTAVKIQGFAGEDPIPALENA----DVVLISAGVARKPGMDRSDLFN 92          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_HAES1 (Malate dehydrogenase OS=Haemophilus somnus (strain 129Pt) GN=mdh PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.984e-19
Identity = 54/95 (56.84%), Postives = 66/95 (69.47%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQ---PQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            K+A+LGAAGGIGQ LA+L+K+  P  S L LYD+   TPGV AD+SH  T   ++GF G+   P LENA    D+V+I AGV RKPGM R DLFN
Sbjct:    2 KIAVLGAAGGIGQALALLLKLQLPAGSELSLYDIAPVTPGVAADVSHIPTAVKIQGFAGEDPTPALENA----DVVLISAGVARKPGMDRSDLFN 92          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_ACTSZ (Malate dehydrogenase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=mdh PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.984e-19
Identity = 55/92 (59.78%), Postives = 64/92 (69.57%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KV +LGA+GGIGQPL++L+K++ P  S L LYDV   TPGV  DISH  T   V GF G    E AL G D+V+I AGV RKPGMTR DLFN
Sbjct:    2 KVTLLGASGGIGQPLSLLLKLHLPAESDLSLYDVAPVTPGVAKDISHIPTSVEVEGFGGDDPSE-ALKGADIVLICAGVARKPGMTRADLFN 92          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_SHEWM (Malate dehydrogenase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=mdh PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.385e-19
Identity = 54/92 (58.70%), Postives = 62/92 (67.39%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH  T   V+GF GQ     AL G D+V+I AGV RKPGM R DLFN
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPADSKLSLYDIAPVTPGVAVDLSHIPTAVEVKGFAGQDP-SPALEGADVVLISAGVARKPGMDRSDLFN 92          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_SHEFN (Malate dehydrogenase OS=Shewanella frigidimarina (strain NCIMB 400) GN=mdh PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.385e-19
Identity = 53/92 (57.61%), Postives = 63/92 (68.48%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH  T   V+GF GQ   + AL G D+V++ AGV RKPGM R DLFN
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTDVEVKGFAGQDPTD-ALVGADVVLMSAGVARKPGMDRSDLFN 92          
BLAST of FC869115 vs. ExPASy Swiss-Prot
Match: MDH_SHESW (Malate dehydrogenase OS=Shewanella sp. (strain W3-18-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.540e-19
Identity = 52/92 (56.52%), Postives = 62/92 (67.39%), Query Frame = 3
Query:  138 KVAILGAAGGIGQPLAMLMKIN-PLVSILHLYDVVN-TPGVTADISHTDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFN 407
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH  T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEIKGFAGEDPTP-ALVGADVVLISAGVARKPGMDRSDLFN 92          
The following BLAST results are available for this feature:
BLAST of FC869115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
MDH_COLP31.795e-2059.78Malate dehydrogenase OS=Colwellia psychrerythraea ... [more]
MDH_MANSM8.907e-2061.54Malate dehydrogenase OS=Mannheimia succiniciproduc... [more]
MDH_ALTMD8.907e-2058.70Malate dehydrogenase OS=Alteromonas macleodii (str... [more]
MDH_PASMU1.163e-1958.70Malate dehydrogenase OS=Pasteurella multocida GN=m... [more]
MDH_HAES21.984e-1956.84Malate dehydrogenase OS=Haemophilus somnus (strain... [more]
MDH_HAES11.984e-1956.84Malate dehydrogenase OS=Haemophilus somnus (strain... [more]
MDH_ACTSZ1.984e-1959.78Malate dehydrogenase OS=Actinobacillus succinogene... [more]
MDH_SHEWM3.385e-1958.70Malate dehydrogenase OS=Shewanella woodyi (strain ... [more]
MDH_SHEFN3.385e-1957.61Malate dehydrogenase OS=Shewanella frigidimarina (... [more]
MDH_SHESW7.540e-1956.52Malate dehydrogenase OS=Shewanella sp. (strain W3-... [more]

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Properties
Property NameValue
Genbank descriptionC31008F10EF AbioticL1 Citrus clementina cDNA clone C31008F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869115 ID=FC869115; Name=FC869115; organism=Citrus clementina; type=EST; length=408bp
AAATGGAGTTTAGCTCAGAGGCTAATCAGCGCATTTTTCCCATCTCTGCT
CATCATTACCCTCCAAATCTCCAGATGGAGGAGAATTCTTGCTTGAGGCA
AGCTAAGTGCCGGGCAAAAGGCGGGGCAGCTGGATTCAAAGTAGCCATCT
TGGGTGCTGCTGGAGGCATTGGCCAACCCCTTGCAATGCTAATGAAGATA
AACCCCCTGGTCTCAATCCTTCACCTCTATGATGTTGTCAATACCCCTGG
TGTCACTGCTGATATTAGCCATACGGACACCGGCGCTGTGGTACGGGGTT
TCCTAGGCCAGCCACAGCTTGAGAATGCTCTCACAGGGATGGACCTTGTC
ATTATCCCTGCCGGCGTTCCGAGGAAGCCTGGAATGACCAGGGATGATCT
TTTCAATA
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