FC869119

Overview
NameFC869119
Unique NameFC869119
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length615
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: E4PD_SHISS (D-erythrose-4-phosphate dehydrogenase OS=Shigella sonnei (strain Ss046) GN=epd PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19
Identity = 55/121 (45.45%), Postives = 79/121 (65.29%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWH--GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            ++VAINGFGRIGRN +R  +  GR+ + + VVAIN+       +HLLKYD++ G F  +V+    D + V    I+V+  R+  +LPW +LG+D+V++ TGV+  RE    HI AGAKKVL
Sbjct:    3 VRVAINGFGRIGRNVVRALYESGRR-AEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQE-RDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVL 121          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: E4PD_SHIFL (D-erythrose-4-phosphate dehydrogenase OS=Shigella flexneri GN=epd PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19
Identity = 55/121 (45.45%), Postives = 79/121 (65.29%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWH--GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            ++VAINGFGRIGRN +R  +  GR+ + + VVAIN+       +HLLKYD++ G F  +V+    D + V    I+V+  R+  +LPW +LG+D+V++ TGV+  RE    HI AGAKKVL
Sbjct:    3 VRVAINGFGRIGRNVVRALYESGRR-AEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQE-RDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVL 121          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: E4PD_SHIF8 (D-erythrose-4-phosphate dehydrogenase OS=Shigella flexneri serotype 5b (strain 8401) GN=epd PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19
Identity = 55/121 (45.45%), Postives = 79/121 (65.29%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWH--GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            ++VAINGFGRIGRN +R  +  GR+ + + VVAIN+       +HLLKYD++ G F  +V+    D + V    I+V+  R+  +LPW +LG+D+V++ TGV+  RE    HI AGAKKVL
Sbjct:    3 VRVAINGFGRIGRNVVRALYESGRR-AEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQE-RDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVL 121          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: E4PD_SHIDS (D-erythrose-4-phosphate dehydrogenase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=epd PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19
Identity = 55/121 (45.45%), Postives = 79/121 (65.29%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWH--GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            ++VAINGFGRIGRN +R  +  GR+ + + VVAIN+       +HLLKYD++ G F  +V+    D + V    I+V+  R+  +LPW +LG+D+V++ TGV+  RE    HI AGAKKVL
Sbjct:    3 VRVAINGFGRIGRNVVRALYESGRR-AEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQE-RDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVL 121          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: E4PD_SHIBS (D-erythrose-4-phosphate dehydrogenase OS=Shigella boydii serotype 4 (strain Sb227) GN=epd PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19
Identity = 55/121 (45.45%), Postives = 79/121 (65.29%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWH--GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            ++VAINGFGRIGRN +R  +  GR+ + + VVAIN+       +HLLKYD++ G F  +V+    D + V    I+V+  R+  +LPW +LG+D+V++ TGV+  RE    HI AGAKKVL
Sbjct:    3 VRVAINGFGRIGRNVVRALYESGRR-AEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQE-RDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVL 121          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: E4PD_SHIB3 (D-erythrose-4-phosphate dehydrogenase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=epd PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19
Identity = 55/121 (45.45%), Postives = 79/121 (65.29%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWH--GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            ++VAINGFGRIGRN +R  +  GR+ + + VVAIN+       +HLLKYD++ G F  +V+    D + V    I+V+  R+  +LPW +LG+D+V++ TGV+  RE    HI AGAKKVL
Sbjct:    3 VRVAINGFGRIGRNVVRALYESGRR-AEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQE-RDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVL 121          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: E4PD_SHEPW (D-erythrose-4-phosphate dehydrogenase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=epd PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19
Identity = 49/120 (40.83%), Postives = 74/120 (61.67%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            ++VAING+GRIGR+ LR  +   K   +++VAIN+    +   HL +YD+T G F   VK +    + +    I+++   NP NLPW ++ ID+V E TGV  DR+    HI+AGA++VL
Sbjct:    2 IRVAINGYGRIGRSILRAVYESAKRDRIQIVAINELAKPEAMLHLTQYDTTHGRFHTQVK-LDEQHMIIGDDAIKLLHEPNPANLPWQEMDIDIVFEATGVINDRQACEAHIEAGARQVL 120          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: E4PD_SHEHH (D-erythrose-4-phosphate dehydrogenase OS=Shewanella halifaxensis (strain HAW-EB4) GN=epd PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19
Identity = 50/120 (41.67%), Postives = 74/120 (61.67%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            ++VAING+GRIGR+ LR  +   K   +++VAIN+    +   HL +YD+T G F   VK +    + +    I+++   NP NLPW +L ID+V E TGV  DR+    H++AGAK+VL
Sbjct:    2 IRVAINGYGRIGRSILRALYESAKRDRIQIVAINELAKPEAMLHLTQYDTTHGRFHTQVK-LDNQHMIIGDDAIKLLHEPNPANLPWKELDIDIVYEATGVINDRQECEAHLKAGAKQVL 120          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: E4PD_SALSV (D-erythrose-4-phosphate dehydrogenase OS=Salmonella schwarzengrund (strain CVM19633) GN=epd PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19
Identity = 53/121 (43.80%), Postives = 80/121 (66.12%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWH--GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            +++AINGFGRIGRN +R  +  GR+ + + VVAIN+       +HLLKYD++ G F  +V+    + + V   VI+++  R   +LPW +LG+D+V++ TGV+ +RE    HI AGAKKVL
Sbjct:    3 VRIAINGFGRIGRNVVRALYESGRR-AEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRHE-REQLFVGDDVIRILHERTLADLPWRELGVDIVLDCTGVYGNREHGEAHIAAGAKKVL 121          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: E4PD_ECOUT (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=epd PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19
Identity = 55/121 (45.45%), Postives = 79/121 (65.29%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWH--GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            ++VAINGFGRIGRN +R  +  GR+ + + VVAIN+       +HLLKYD++ G F  +V+    D + V    I+V+  R+  +LPW +LG+D+V++ TGV+  RE    HI AGAKKVL
Sbjct:    3 VRVAINGFGRIGRNVVRALYESGRR-AEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQE-RDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVL 121          
The following BLAST results are available for this feature:
BLAST of FC869119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
E4PD_SHISS3.845e-1945.45D-erythrose-4-phosphate dehydrogenase OS=Shigella ... [more]
E4PD_SHIFL3.845e-1945.45D-erythrose-4-phosphate dehydrogenase OS=Shigella ... [more]
E4PD_SHIF83.845e-1945.45D-erythrose-4-phosphate dehydrogenase OS=Shigella ... [more]
E4PD_SHIDS3.845e-1945.45D-erythrose-4-phosphate dehydrogenase OS=Shigella ... [more]
E4PD_SHIBS3.845e-1945.45D-erythrose-4-phosphate dehydrogenase OS=Shigella ... [more]
E4PD_SHIB33.845e-1945.45D-erythrose-4-phosphate dehydrogenase OS=Shigella ... [more]
E4PD_SHEPW3.845e-1940.83D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_SHEHH3.845e-1941.67D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_SALSV3.845e-1943.80D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_ECOUT3.845e-1945.45D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]

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Properties
Property NameValue
Genbank descriptionC31008G02EF AbioticL1 Citrus clementina cDNA clone C31008G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869119 ID=FC869119; Name=FC869119; organism=Citrus clementina; type=EST; length=615bp
TCAGCTTAGCGACCACGGCTGGCTCTTGCTTGCATCATCCAGCAAATACC
TATCATGGCTTCGGCCACTCTCTCTGTAGCCAAATCAGCTCTTCAGGGAA
ATGGTAAGGGATTCTCAGAATTCTCAGGTCTACGCAACTCTGCAAGCCTT
CCTTTTGGCAGGAAATCTTCTGATGACTTCCATTCAGTCATTGCTCTCCA
GACCTCTGCTTTAGGAAGCAGCAGCAGCGGGTACAGGAAGGTTGCTGCTC
AGGCAAAGCTGAAGGTTGCAATCAATGGGTTTGGTAGAATTGGTAGGAAC
TTCTTGAGGTGCTGGCACGGCCGCAAGGACTCTCCACTTGAAGTCGTTGC
CATCAATGACACCGGAGGTGTCAAGCAGGCCTCTCACCTCCTCAAGTACG
ACTCCACCCTTGGCATCTTTGAAGCCGATGTTAAACCAGTTGGTACTGAT
GGCATCTCTGTTGATGGCAAGGTCATCCAGGTTGTTTCTAACCGCAACCC
CGTCAATCTCCCCTGGGGGGACTTGGGCATCGACCTTGTGATTGAAGGGA
CAGGAGTGTTTGTAGACAGAGAGGGTGCGGGCAAGCACATTCAGGCTGGT
GCCAAGAAAGTACTT
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