FC869119

Overview
NameFC869119
Unique NameFC869119
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length615
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P_PHACH (Glyceraldehyde-3-phosphate dehydrogenase OS=Phanerochaete chrysosporium GN=GPD PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.046e-16
Identity = 48/121 (39.67%), Postives = 72/121 (59.50%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDG-ISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            +K  INGFGRIGR  LR  +      ++VVA+ND    ++   ++ KYDS  G F+  V+    DG + V+GK I V + ++P N+PWG +G + ++E TGVF   E A  H++   KKV+
Sbjct:    3 VKAGINGFGRIGRIVLR--NALLHGDIDVVAVNDPFIDLEYMVYMFKYDSVHGRFKGSVE--AKDGKLYVEGKPIHVFAEKDPANIPWGSVGAEYIVESTGVFTTTEKASAHLKGVCKKVI 119          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P_GLOMM (Glyceraldehyde-3-phosphate dehydrogenase OS=Glossina morsitans morsitans GN=Gapdh PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.046e-16
Identity = 52/119 (43.70%), Postives = 66/119 (55.46%), Query Frame = 1
Query:  262 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            K+ INGFGRIGR  LR      D   EVVA+ND    V    +L KYDST G F+  V   G   + V+GK I V   R+P N+ W   G + ++E TGVF   + A  H + GAKKV+
Sbjct:    3 KIGINGFGRIGRLVLRA---ALDKGAEVVAVNDPFIDVNYMVYLFKYDSTHGRFKGTVAADG-GFLVVNGKKITVFCERDPTNINWASAGAEYIVESTGVFTTIDKASAHFKGGAKKVV 117          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P_DICDI (Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyostelium discoideum GN=gpdA PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.046e-16
Identity = 46/118 (38.98%), Postives = 72/118 (61.02%), Query Frame = 1
Query:  265 VAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            + INGFGRIGR  LR     ++    V+AIN+    VK   ++ KYDST G F+  V+ +  + + V+G  I V + ++P N+ W  +G + ++E TG+F+  E AG H++ GAKKV+
Sbjct:    5 IGINGFGRIGRLVLRA--SLENPECRVLAINEPFMDVKYMVYMFKYDSTHGRFKGTVEDINGEFV-VNGNKIHVFAEKDPANIKWSSVGAEYIVESTGLFLSTEKAGVHLKGGAKKVV 119          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P_CITFR (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Citrobacter freundii GN=gap PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.046e-16
Identity = 45/95 (47.37%), Postives = 63/95 (66.32%), Query Frame = 1
Query:  331 SPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            S +E+VAIND       +++LKYDST G F   V+ V    + V+GK I+V + R+P NL W ++G+D+V E TG+F+  E A KHI AGAKKV+
Sbjct:   10 SDIEIVAINDLLDADYMAYMLKYDSTHGRFNGTVE-VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVV 103          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P_CHICK (Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus gallus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 3.046e-16
Identity = 48/120 (40.00%), Postives = 68/120 (56.67%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            +KV +NGFGRIGR   R         ++VVAIND    +    ++ KYDST G F+  VK      + ++G  I +   R+P N+ W D G + V+E TGVF   E AG H++ GAK+V+
Sbjct:    2 VKVGVNGFGRIGRLVTRA--AVLSGKVQVVAINDPFIDLNYMVYMFKYDSTHGHFKGTVK-AENGKLVINGHAITIFQERDPSNIKWADAGAEYVVESTGVFTTMEKAGAHLKGGAKRVI 118          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3PC_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chlamydomonas reinhardtii GN=GAPC PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.046e-16
Identity = 51/121 (42.15%), Postives = 68/121 (56.20%), Query Frame = 1
Query:  256 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            K+K+ INGFGRIGR  +R    R D  +EVVAIND     +  +++ KYDS    +   V     DG  V+G+ I   +  +P  + WG  G D+VIE TGVF D   A  H+  GAKKV+
Sbjct:    4 KIKIGINGFGRIGRLVMRATMLRPD--IEVVAINDPFIDAEYMAYMFKYDSVHKTWPGHVNG-SKDGFLVEGRKIHTFTESDPSKINWGAAGADIVIESTGVFTDIAKATAHLTGGAKKVI 121          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3PC_MAGLI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Magnolia liliiflora GN=GAPC PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.979e-16
Identity = 48/122 (39.34%), Postives = 72/122 (59.02%), Query Frame = 1
Query:  256 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEA-DVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            K+K+ INGFGRIGR   R    R D  +E+VA+ND        +++ KYDS  G ++  ++K   +  +    K + V   RNP  +PWG+ G + V+E TGVF D++ A  H++ GAKKV+
Sbjct:    5 KIKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDSKTLLFGEKPVTVFGVRNPEEIPWGETGAEFVVESTGVFTDKDKAAAHLKGGAKKVI 124          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P3_ECOLI (Putative glyceraldehyde-3-phosphate dehydrogenase C OS=Escherichia coli (strain K12) GN=gapC PE=5 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.979e-16
Identity = 53/121 (43.80%), Postives = 69/121 (57.02%), Query Frame = 1
Query:  262 KVAINGFGRIGRNFLRCWHGRK---DSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            KV INGFGRIGR  L    GR     S ++VVAIND    K  ++LLK+DS  G F   V     D + VDGK I V + +   N+PW   G ++++E TG +   E +  H+ AGAKKVL
Sbjct:    3 KVGINGFGRIGRLVL----GRLLEVKSNIDVVAINDLTSPKILAYLLKHDSNYGPFPWSVD-FTEDSLIVDGKSIAVYAEKEAKNIPWKAKGAEIIVECTGFYTSAEKSQAHLDAGAKKVL 118          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P_TRISI (Glyceraldehyde-3-phosphate dehydrogenase OS=Trionyx sinensis GN=GAPDH PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.196e-16
Identity = 46/120 (38.33%), Postives = 68/120 (56.67%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            +K+ +NGFGRIGR   R         +++VAIND    +    ++ KYDST G F   VK      + ++G+ I +   R+P N+ WGD G + V+E TGVF   E A  H++ GAK+V+
Sbjct:    2 VKIGVNGFGRIGRLVTRA--AFTCDKVQIVAINDPFIDLNYMVYMFKYDSTHGRFHGTVK-AENGKLVINGQAITIFQERDPANIKWGDAGAEYVVESTGVFTTTEKASAHLKGGAKRVV 118          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3PC_ARATH (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Arabidopsis thaliana GN=GAPC PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 5.196e-16
Identity = 48/125 (38.40%), Postives = 74/125 (59.20%), Query Frame = 1
Query:  247 AQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDG-KVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            A  K+++ INGFGRIGR   R    R D  +E+VA+ND     +  +++ KYDS  G ++ +   +  +   + G K + V   RNP ++PW + G D V+E TGVF D++ A  H++ GAKKV+
Sbjct:    2 ADKKIRIGINGFGRIGRLVARVVLQRDD--VELVAVNDPFITTEYMTYMFKYDSVHGQWKHNELKIKDEKTLLFGEKPVTVFGIRNPEDIPWAEAGADYVVESTGVFTDKDKAAAHLKGGAKKVV 124          
The following BLAST results are available for this feature:
BLAST of FC869119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3P_PHACH3.046e-1639.67Glyceraldehyde-3-phosphate dehydrogenase OS=Phaner... [more]
G3P_GLOMM3.046e-1643.70Glyceraldehyde-3-phosphate dehydrogenase OS=Glossi... [more]
G3P_DICDI3.046e-1638.98Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyo... [more]
G3P_CITFR3.046e-1647.37Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_CHICK3.046e-1640.00Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus... [more]
G3PC_CHLRE3.046e-1642.15Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAGLI3.979e-1639.34Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P3_ECOLI3.979e-1643.80Putative glyceraldehyde-3-phosphate dehydrogenase ... [more]
G3P_TRISI5.196e-1638.33Glyceraldehyde-3-phosphate dehydrogenase OS=Triony... [more]
G3PC_ARATH5.196e-1638.40Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31008G02EF AbioticL1 Citrus clementina cDNA clone C31008G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869119 ID=FC869119; Name=FC869119; organism=Citrus clementina; type=EST; length=615bp
TCAGCTTAGCGACCACGGCTGGCTCTTGCTTGCATCATCCAGCAAATACC
TATCATGGCTTCGGCCACTCTCTCTGTAGCCAAATCAGCTCTTCAGGGAA
ATGGTAAGGGATTCTCAGAATTCTCAGGTCTACGCAACTCTGCAAGCCTT
CCTTTTGGCAGGAAATCTTCTGATGACTTCCATTCAGTCATTGCTCTCCA
GACCTCTGCTTTAGGAAGCAGCAGCAGCGGGTACAGGAAGGTTGCTGCTC
AGGCAAAGCTGAAGGTTGCAATCAATGGGTTTGGTAGAATTGGTAGGAAC
TTCTTGAGGTGCTGGCACGGCCGCAAGGACTCTCCACTTGAAGTCGTTGC
CATCAATGACACCGGAGGTGTCAAGCAGGCCTCTCACCTCCTCAAGTACG
ACTCCACCCTTGGCATCTTTGAAGCCGATGTTAAACCAGTTGGTACTGAT
GGCATCTCTGTTGATGGCAAGGTCATCCAGGTTGTTTCTAACCGCAACCC
CGTCAATCTCCCCTGGGGGGACTTGGGCATCGACCTTGTGATTGAAGGGA
CAGGAGTGTTTGTAGACAGAGAGGGTGCGGGCAAGCACATTCAGGCTGGT
GCCAAGAAAGTACTT
back to top