FC869119

Overview
NameFC869119
Unique NameFC869119
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length615
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P_PICPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia pastoris GN=GPD PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.970e-23
Identity = 62/120 (51.67%), Postives = 78/120 (65.00%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            + V INGFGRIGR  LR    R D  ++VVAIND     + A+++ KYDST   ++ +V   G   I++DGK I V   R+PVN+PWG  G+D VIE TGVF   EGA KHI AGAKKV+
Sbjct:    3 ITVGINGFGRIGRLVLRVALSRAD--IKVVAINDPFIAPEYAAYMFKYDSTHKAYKGEVSASGNK-INIDGKEITVFQERDPVNIPWGKAGVDYVIESTGVFTTLEGAQKHIDAGAKKVV 119          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P_HAEIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Haemophilus influenzae GN=gapA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.573e-23
Identity = 58/119 (48.74%), Postives = 79/119 (66.39%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            +K+ INGFGRIGR   R    R D  +EVV IND   V+  +++LKYDST G F+  V+ V    + V+GK I+V + R+P NL WG +G+D+ +E TG+F+  E A KHI AGAKKV+
Sbjct:    3 IKIGINGFGRIGRIVFRAAQHRDD--IEVVGINDLIDVEYMAYMLKYDSTHGRFDGTVE-VKDGNLVVNGKTIRVTAERDPANLNWGAIGVDIAVEATGLFLTDETARKHITAGAKKVV 118          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P_XANFL (Glyceraldehyde-3-phosphate dehydrogenase OS=Xanthobacter flavus GN=gap PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.360e-23
Identity = 59/119 (49.58%), Postives = 77/119 (64.71%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            +KVAINGFGRIGRN LR       + +EVVAIND G V+  +HL ++DS  G F  +VK  G D I V    I+V + RNP  LP  +LG+D+ +E TG+F  R+ A  H+ AGAK+VL
Sbjct:    3 VKVAINGFGRIGRNVLRAIIESGRTDIEVVAINDLGPVETNAHLFRFDSVHGRFPGEVKVAG-DTIDVGRGPIKVTAVRNPAELPHKELGVDIALECTGIFTSRDKAAAHLAAGAKRVL 120          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P_ZYMMO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zymomonas mobilis GN=gap PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.389e-23
Identity = 60/119 (50.42%), Postives = 75/119 (63.03%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            +KVAINGFGRIGR   R    R DS LE+V IND G V+  + L K DS  G +   V   G D + +DGK I V + R+P NLP   LG+D+V+E TG+F + E A  H+ AGAKKVL
Sbjct:    3 VKVAINGFGRIGRLAARAILSRPDSGLELVTINDLGSVEGNAFLFKRDSAHGTYPGTVTTEGNDMV-IDGKKIVVTAERDPANLPHKKLGVDIVMECTGIFTNTEKASAHLTAGAKKVL 120          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P_CHLPN (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia pneumoniae GN=gap PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.732e-23
Identity = 63/119 (52.94%), Postives = 80/119 (67.23%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            +KV INGFGRIGR  LR    +++S +EV+AIND       ++L K+DST G F  DV+    D + V  + IQ +S RN  NLPW DLG+DLVIE TG+F  +E A KHIQAGAK+VL
Sbjct:    1 MKVVINGFGRIGRLVLRQIL-KRNSSVEVLAINDLVPGDALTYLFKFDSTHGRFPEDVR-CEADHLIVGKRKIQFLSERNVQNLPWKDLGVDLVIECTGLFTKKEDAEKHIQAGAKRVL 117          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.486e-23
Identity = 58/120 (48.33%), Postives = 78/120 (65.00%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            +KV INGFGRIGR  LR  +  K+  +EVVA+ND     + A+++ KYDST G F+  V+     G+ +DGK IQV   R+P N+PWG  G D V+E TGVF  +E A  H++ GAKKV+
Sbjct:    3 IKVGINGFGRIGRIVLR--NALKNPEVEVVAVNDPFIDTEYAAYMFKYDSTHGRFKGKVE-AKDGGLIIDGKHIQVFGERDPSNIPWGKAGADYVVESTGVFTGKEAASAHLKGGAKKVI 119          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3PC_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 7.486e-23
Identity = 57/119 (47.90%), Postives = 78/119 (65.55%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            ++V INGFGRIGR   R    R D  +E+V IND       +++LKYDST G FE  V+  G   + V+GK I+V S R+P NL W ++ +D+V+E TG+F+  + A KHIQAGAKKV+
Sbjct:    3 IRVGINGFGRIGRVVFRAAQRRND--IEIVGINDLLDADYMAYMLKYDSTHGRFEGAVEVQG-GALVVNGKKIRVTSERDPANLKWNEINVDVVVESTGLFLSDDTARKHIQAGAKKVV 118          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P1_SALTY (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhimurium GN=gapA PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 7.486e-23
Identity = 58/119 (48.74%), Postives = 80/119 (67.23%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            +KV INGFGRIGR   R    +K S +E+VAIND    +  +++LKYDST G F+  V+ V    + V+GK I+V + R+P NL W ++G+D+V E TG+F+  E A KHI AGAKKV+
Sbjct:    3 IKVGINGFGRIGRIVFRA--AQKRSDIEIVAINDLLDAEYMAYMLKYDSTHGRFDGTVE-VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGIFLTDETARKHITAGAKKVV 118          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P1_SALTI (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhi GN=gapA PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 7.486e-23
Identity = 58/119 (48.74%), Postives = 80/119 (67.23%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            +KV INGFGRIGR   R    +K S +E+VAIND    +  +++LKYDST G F+  V+ V    + V+GK I+V + R+P NL W ++G+D+V E TG+F+  E A KHI AGAKKV+
Sbjct:    3 IKVGINGFGRIGRIVFRA--AQKRSDIEIVAINDLLDAEYMAYMLKYDSTHGRFDGTVE-VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGIFLTDETARKHITAGAKKVV 118          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P1_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus subtilis GN=gapA PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 7.486e-23
Identity = 55/119 (46.22%), Postives = 76/119 (63.87%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            +KV INGFGRIGRN  R      +  +EVVA+ND       +HLL+YDS  G  +A+V   G + + V+GK I+V + R+P  L WG  G+++V+E TG F  R  A KH++AGAKKV+
Sbjct:    3 VKVGINGFGRIGRNVFRA--ALNNPEVEVVAVNDLTDANMLAHLLQYDSVHGKLDAEVSVDGNN-LVVNGKTIEVSAERDPAKLSWGKQGVEIVVESTGFFTKRADAAKHLEAGAKKVI 118          
The following BLAST results are available for this feature:
BLAST of FC869119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3P_PICPA1.970e-2351.67Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_HAEIN2.573e-2348.74Glyceraldehyde-3-phosphate dehydrogenase OS=Haemop... [more]
G3P_XANFL3.360e-2349.58Glyceraldehyde-3-phosphate dehydrogenase OS=Xantho... [more]
G3P_ZYMMO4.389e-2350.42Glyceraldehyde-3-phosphate dehydrogenase OS=Zymomo... [more]
G3P_CHLPN5.732e-2352.94Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
G3P_YARLI7.486e-2348.33Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]
G3PC_TRYBB7.486e-2347.90Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_SALTY7.486e-2348.74Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_SALTI7.486e-2348.74Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_BACSU7.486e-2346.22Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]

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Properties
Property NameValue
Genbank descriptionC31008G02EF AbioticL1 Citrus clementina cDNA clone C31008G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869119 ID=FC869119; Name=FC869119; organism=Citrus clementina; type=EST; length=615bp
TCAGCTTAGCGACCACGGCTGGCTCTTGCTTGCATCATCCAGCAAATACC
TATCATGGCTTCGGCCACTCTCTCTGTAGCCAAATCAGCTCTTCAGGGAA
ATGGTAAGGGATTCTCAGAATTCTCAGGTCTACGCAACTCTGCAAGCCTT
CCTTTTGGCAGGAAATCTTCTGATGACTTCCATTCAGTCATTGCTCTCCA
GACCTCTGCTTTAGGAAGCAGCAGCAGCGGGTACAGGAAGGTTGCTGCTC
AGGCAAAGCTGAAGGTTGCAATCAATGGGTTTGGTAGAATTGGTAGGAAC
TTCTTGAGGTGCTGGCACGGCCGCAAGGACTCTCCACTTGAAGTCGTTGC
CATCAATGACACCGGAGGTGTCAAGCAGGCCTCTCACCTCCTCAAGTACG
ACTCCACCCTTGGCATCTTTGAAGCCGATGTTAAACCAGTTGGTACTGAT
GGCATCTCTGTTGATGGCAAGGTCATCCAGGTTGTTTCTAACCGCAACCC
CGTCAATCTCCCCTGGGGGGACTTGGGCATCGACCTTGTGATTGAAGGGA
CAGGAGTGTTTGTAGACAGAGAGGGTGCGGGCAAGCACATTCAGGCTGGT
GCCAAGAAAGTACTT
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