FC869119

Overview
NameFC869119
Unique NameFC869119
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length615
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3PA_GUITH (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Guillardia theta GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.730e-11
Identity = 42/116 (36.21%), Postives = 62/116 (53.45%), Query Frame = 1
Query:  271 INGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQ-ASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            INGFGRIGR   R     KD   +++ +N         ++  KYDS  G ++ DV   G D + +DG+ +     R+P ++ W   G++ + E TGVF+  E A  HI AG KKV+
Sbjct:   53 INGFGRIGRLVARIMI--KDPETKLLQVNAGSATPDYMAYQFKYDSIHGRYQGDVVVDGDD-LVIDGQRVITTRARDPKDIGWAKTGVEYLCESTGVFLTAEKAQPHIDAGVKKVI 165          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P_AMAMU (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Amanita muscaria GN=GPD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 38/98 (38.78%), Postives = 57/98 (58.16%), Query Frame = 1
Query:  328 DSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDG-ISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            ++ L+VVAIND    +    ++ KYDS  G F   V+    DG + ++ K I V   R+PV +PWG  G + ++E TGVF   E A  H++ GAKK++
Sbjct:    2 ETDLDVVAINDPFIDLAYMVYMFKYDSVHGRFSGSVET--KDGKLWINQKPITVFRKRDPVQIPWGSAGAEYIVESTGVFTTTEKASAHLKGGAKKIV 97          
The following BLAST results are available for this feature:
BLAST of FC869119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3PA_GUITH1.730e-1136.21Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3P_AMAMU3.854e-1138.78Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionC31008G02EF AbioticL1 Citrus clementina cDNA clone C31008G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869119 ID=FC869119; Name=FC869119; organism=Citrus clementina; type=EST; length=615bp
TCAGCTTAGCGACCACGGCTGGCTCTTGCTTGCATCATCCAGCAAATACC
TATCATGGCTTCGGCCACTCTCTCTGTAGCCAAATCAGCTCTTCAGGGAA
ATGGTAAGGGATTCTCAGAATTCTCAGGTCTACGCAACTCTGCAAGCCTT
CCTTTTGGCAGGAAATCTTCTGATGACTTCCATTCAGTCATTGCTCTCCA
GACCTCTGCTTTAGGAAGCAGCAGCAGCGGGTACAGGAAGGTTGCTGCTC
AGGCAAAGCTGAAGGTTGCAATCAATGGGTTTGGTAGAATTGGTAGGAAC
TTCTTGAGGTGCTGGCACGGCCGCAAGGACTCTCCACTTGAAGTCGTTGC
CATCAATGACACCGGAGGTGTCAAGCAGGCCTCTCACCTCCTCAAGTACG
ACTCCACCCTTGGCATCTTTGAAGCCGATGTTAAACCAGTTGGTACTGAT
GGCATCTCTGTTGATGGCAAGGTCATCCAGGTTGTTTCTAACCGCAACCC
CGTCAATCTCCCCTGGGGGGACTTGGGCATCGACCTTGTGATTGAAGGGA
CAGGAGTGTTTGTAGACAGAGAGGGTGCGGGCAAGCACATTCAGGCTGGT
GCCAAGAAAGTACTT
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