FC869119

Overview
NameFC869119
Unique NameFC869119
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length615
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC869119_ssr217 microsatellite FC869119_ssr217:217..228. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5796 contig Ccv1_Contig5796:55..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P_CLOAB (Glyceraldehyde-3-phosphate dehydrogenase OS=Clostridium acetobutylicum GN=gap PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.277e-22
Identity = 59/118 (50.00%), Postives = 77/118 (65.25%), Query Frame = 1
Query:  262 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            K+AINGFGRIGR  LR     +   LEVVAIND    K  +HL KYDS+ G F  +++ V      V+GK ++V +  +P  LPWGDLGID+V+E TG F  +E A  H++AGAKKV+
Sbjct:    3 KIAINGFGRIGRLALR--RILEVPGLEVVAINDLTDAKMLAHLFKYDSSQGRFNGEIE-VKEGAFVVNGKEVKVFAEADPEKLPWGDLGIDVVLECTGFFTKKEKAEAHVRAGAKKVV 117          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P_BUCAI (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=gapA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.277e-22
Identity = 58/119 (48.74%), Postives = 80/119 (67.23%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            +KV INGFGRIGR   R    +K S +E++AIND    +  +++LKYDST G+F+  +     D I ++GK I+V S ++P  L W DL ID+VIE TG+F+ RE A KHI AG+KKV+
Sbjct:    3 IKVGINGFGRIGRVLFRL--AQKRSDIEIIAINDLLAPEYIAYMLKYDSTHGVFKKHIT-FDKDNIIINGKNIRVTSIKDPEKLMWHDLSIDVVIESTGLFLKREQAYKHILAGSKKVV 118          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P1_ESCF3 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=gapA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.277e-22
Identity = 58/119 (48.74%), Postives = 79/119 (66.39%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            +KV INGFGRIGR   R    +K S +E+VAIND       +++LKYDST G F+  V+ V    + V+GK I+V + R+P NL W ++G+D+V E TG+F+  E A KHI AGAKKV+
Sbjct:    3 IKVGINGFGRIGRIVFRA--AQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVE-VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGIFLTDETARKHITAGAKKVV 118          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P_PSEAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Pseudomonas aeruginosa GN=gap PE=3 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 1.668e-22
Identity = 58/120 (48.33%), Postives = 76/120 (63.33%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWH-GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            +++AINGFGRIGRN LR  + G     L+VVAIND G     +HL +YDS  G F  +V+    + + V G  I V + RNP  LPW  LG+D+V+E TG+F  R+ A  H+QAGA KVL
Sbjct:    3 IRLAINGFGRIGRNVLRALYTGHYREQLQVVAINDLGDAAVNAHLFQYDSVHGHFPGEVEH-DAESLRVMGDRIAVSAIRNPAELPWKSLGVDIVLECTGLFTSRDKAAAHLQAGAGKVL 121          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P_BUCBP (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=gapA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.668e-22
Identity = 56/119 (47.06%), Postives = 80/119 (67.23%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            +K+ INGFGRIGR   R    R  S +E++AIND   V+  +++LKYDS  G F   +  +  + + V+GK I++ + ++P NL WGDL ID+VIE TG+F+  E + KHIQAGAKKV+
Sbjct:    3 IKIGINGFGRIGRVLFRLAQLR--SNIEILAINDLINVQYIAYMLKYDSIHGNFNGKIV-IKNETLFVNGKKIRITNEKDPKNLMWGDLNIDVVIESTGIFLTTEDSYKHIQAGAKKVI 118          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P_CORGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Corynebacterium glutamicum GN=gap PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.178e-22
Identity = 60/119 (50.42%), Postives = 74/119 (62.18%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            ++V INGFGRIGRNF R    R D  LEVVA+ND    K  S LLK+DS +G    +V+    D I+V GK I V + R+P NL W    +D+VIE TG F D   A  HI+AGAKKV+
Sbjct:    3 IRVGINGFGRIGRNFFRAVLERSDD-LEVVAVNDLTDNKTLSTLLKFDSIMGRLGQEVE-YDDDSITVGGKRIAVYAERDPKNLDWAAHNVDIVIESTGFFTDANAAKAHIEAGAKKVI 119          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P_BORBU (Glyceraldehyde-3-phosphate dehydrogenase OS=Borrelia burgdorferi GN=gap PE=1 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 2.178e-22
Identity = 62/125 (49.60%), Postives = 82/125 (65.60%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDG-ISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVF----VDREGAGKHI-QAGAKKVL 615
            +K+AINGFGRIGRN  +    R    +++VAIND    K  +HLLKYDST G++   V+    DG I VDG+ I++++ R+P NLPW  LGID+VIE TGVF     D+ G   H+  AGAKKV+
Sbjct:    1 MKLAINGFGRIGRNVFKIAFERG---IDIVAINDLTDPKTLAHLLKYDSTFGVYNKKVE--SRDGAIVVDGREIKIIAERDPKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHAGAKKVI 120          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P1_SHIFL (Glyceraldehyde-3-phosphate dehydrogenase A OS=Shigella flexneri GN=gapA PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.178e-22
Identity = 58/119 (48.74%), Postives = 79/119 (66.39%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            +KV INGFGRIGR   R    +K S +E+VAIND       +++LKYDST G F+  V+ V    + V+GK I+V + R+P NL W ++G+D+V E TG+F+  E A KHI AGAKKV+
Sbjct:    3 IKVGINGFGRIGRIVFRA--AQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVE-VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVV 118          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P1_ECOLI (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli (strain K12) GN=gapA PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.178e-22
Identity = 58/119 (48.74%), Postives = 79/119 (66.39%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            +KV INGFGRIGR   R    +K S +E+VAIND       +++LKYDST G F+  V+ V    + V+GK I+V + R+P NL W ++G+D+V E TG+F+  E A KHI AGAKKV+
Sbjct:    3 IKVGINGFGRIGRIVFRA--AQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVE-VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVV 118          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P1_ECOL6 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O6 GN=gapA PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.178e-22
Identity = 58/119 (48.74%), Postives = 79/119 (66.39%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            +KV INGFGRIGR   R    +K S +E+VAIND       +++LKYDST G F+  V+ V    + V+GK I+V + R+P NL W ++G+D+V E TG+F+  E A KHI AGAKKV+
Sbjct:    3 IKVGINGFGRIGRIVFRA--AQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVE-VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVV 118          
The following BLAST results are available for this feature:
BLAST of FC869119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3P_CLOAB1.277e-2250.00Glyceraldehyde-3-phosphate dehydrogenase OS=Clostr... [more]
G3P_BUCAI1.277e-2248.74Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3P1_ESCF31.277e-2248.74Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P_PSEAE1.668e-2248.33Glyceraldehyde-3-phosphate dehydrogenase OS=Pseudo... [more]
G3P_BUCBP1.668e-2247.06Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3P_CORGL2.178e-2250.42Glyceraldehyde-3-phosphate dehydrogenase OS=Coryne... [more]
G3P_BORBU2.178e-2249.60Glyceraldehyde-3-phosphate dehydrogenase OS=Borrel... [more]
G3P1_SHIFL2.178e-2248.74Glyceraldehyde-3-phosphate dehydrogenase A OS=Shig... [more]
G3P1_ECOLI2.178e-2248.74Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECOL62.178e-2248.74Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]

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Properties
Property NameValue
Genbank descriptionC31008G02EF AbioticL1 Citrus clementina cDNA clone C31008G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869119 ID=FC869119; Name=FC869119; organism=Citrus clementina; type=EST; length=615bp
TCAGCTTAGCGACCACGGCTGGCTCTTGCTTGCATCATCCAGCAAATACC
TATCATGGCTTCGGCCACTCTCTCTGTAGCCAAATCAGCTCTTCAGGGAA
ATGGTAAGGGATTCTCAGAATTCTCAGGTCTACGCAACTCTGCAAGCCTT
CCTTTTGGCAGGAAATCTTCTGATGACTTCCATTCAGTCATTGCTCTCCA
GACCTCTGCTTTAGGAAGCAGCAGCAGCGGGTACAGGAAGGTTGCTGCTC
AGGCAAAGCTGAAGGTTGCAATCAATGGGTTTGGTAGAATTGGTAGGAAC
TTCTTGAGGTGCTGGCACGGCCGCAAGGACTCTCCACTTGAAGTCGTTGC
CATCAATGACACCGGAGGTGTCAAGCAGGCCTCTCACCTCCTCAAGTACG
ACTCCACCCTTGGCATCTTTGAAGCCGATGTTAAACCAGTTGGTACTGAT
GGCATCTCTGTTGATGGCAAGGTCATCCAGGTTGTTTCTAACCGCAACCC
CGTCAATCTCCCCTGGGGGGACTTGGGCATCGACCTTGTGATTGAAGGGA
CAGGAGTGTTTGTAGACAGAGAGGGTGCGGGCAAGCACATTCAGGCTGGT
GCCAAGAAAGTACTT
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