FC869119

Overview
NameFC869119
Unique NameFC869119
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length615
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC869119_ssr217 microsatellite FC869119_ssr217:217..228. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5796 contig Ccv1_Contig5796:55..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P1_ECO57 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O157:H7 GN=gapA PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.178e-22
Identity = 58/119 (48.74%), Postives = 79/119 (66.39%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            +KV INGFGRIGR   R    +K S +E+VAIND       +++LKYDST G F+  V+ V    + V+GK I+V + R+P NL W ++G+D+V E TG+F+  E A KHI AGAKKV+
Sbjct:    3 IKVGINGFGRIGRIVFRA--AQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVE-VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVV 118          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P1_BACCE (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus cereus GN=gap1 PE=1 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 2.178e-22
Identity = 54/118 (45.76%), Postives = 73/118 (61.86%), Query Frame = 1
Query:  262 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            K+ INGFGRIGRN  R      +S +EVVAIND    K  +HLLKYD+  G   A+V     + I V+GK I+V++ R+P  LPW D G+++V+E TG F  +  A KH+    KKV+
Sbjct:    3 KIGINGFGRIGRNVFRA--ALNNSEVEVVAINDLTDAKTLAHLLKYDTVHGTLNAEVS-ANENSIVVNGKEIKVIAERDPAQLPWSDYGVEVVVESTGRFTKKSDAEKHLGGSVKKVI 117          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: E4PD_PSEHT (D-erythrose-4-phosphate dehydrogenase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=epd PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.178e-22
Identity = 58/120 (48.33%), Postives = 78/120 (65.00%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            +K+AINGFGRIGRN +R  +     + +++VAIN+    +  +HLLKYD++ G F   VK +G D ISV G  I +    NP  LPW  LG+D+V+E TGV+  RE A  H+ AGAKKVL
Sbjct:    3 IKLAINGFGRIGRNIVRALYESGLSNEIKIVAINELADPEAIAHLLKYDTSHGRFFFPVK-LGEDTISVAGDAIALFCEPNPAELPWKTLGVDVVLECTGVYHSREHAQLHLTAGAKKVL 121          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P_STRAU (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces aureofaciens GN=gap PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.845e-22
Identity = 59/120 (49.17%), Postives = 76/120 (63.33%), Query Frame = 1
Query:  262 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDG--ISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            ++AINGFGRIGRN LR    R DS L+VVA+ND       + LL YD+T G      +PV  +G  + VDG+ I V + R P NLPW +LG+D+V+E TG F   + A  H+ AGAKKVL
Sbjct:    3 RIAINGFGRIGRNVLRALLER-DSDLDVVAVNDLTEPATLARLLAYDTTSGRLG---RPVTVEGNVLVVDGRRITVTAEREPANLPWAELGVDIVLEATGRFTSAKAARAHLDAGAKKVL 118          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P_CLOPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Clostridium pasteurianum GN=gap PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.845e-22
Identity = 59/118 (50.00%), Postives = 77/118 (65.25%), Query Frame = 1
Query:  262 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            KVAINGFGRIGR  LR     +   LEVVAIND    K  +HL KYDS+ G F  +++ V      V+GK ++V +  +P  LPWG+LGID+V+E TG F  +E A  H++AGAKKV+
Sbjct:    3 KVAINGFGRIGRLALR--RILEVPGLEVVAINDLTDAKMLAHLFKYDSSQGRFNGEIE-VKEGAFVVNGKEVKVFAEADPEKLPWGELGIDVVLECTGFFTKKEKAEAHVRAGAKKVV 117          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P_MYCPN (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoplasma pneumoniae GN=gapA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.715e-22
Identity = 58/126 (46.03%), Postives = 79/126 (62.70%), Query Frame = 1
Query:  241 VAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDG-ISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            +A    ++VAINGFGRIGR   R    +K+  +E+VA+ND       +HLLKYDS  G F+  V  V  D  + +D K + V S ++P NLPW +  ID+V+E TG FV  EGA  H+QAGAK+V+
Sbjct:    2 LAKSKTIRVAINGFGRIGRLVFRALLSQKN--IEIVAVNDLTHPDTLAHLLKYDSAHGEFKKKV--VAKDNTLMIDKKKVLVFSEKDPANLPWAEHNIDIVVESTGRFVSEEGASLHLQAGAKRVI 123          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P2_RHOSH (Glyceraldehyde-3-phosphate dehydrogenase B OS=Rhodobacter sphaeroides GN=gapB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.715e-22
Identity = 59/119 (49.58%), Postives = 76/119 (63.87%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            ++VAINGFGRIGRN LR       + +EVVAIND G V+  +HLL++DS  G F A V   G D I V    I+V + RNP  LPW   G+D+ +E TG+F  +E A  H+Q GAK+VL
Sbjct:    3 IRVAINGFGRIGRNVLRAIVESGRTDIEVVAINDLGQVETNAHLLRFDSVHGRFPAKVTS-GDDWIDVGRGPIKVTAIRNPAELPWA--GVDMAMECTGIFTTKEKAAAHLQNGAKRVL 118          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P_PARBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=GPD PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.277e-22
Identity = 53/120 (44.17%), Postives = 76/120 (63.33%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            +KV INGFGRIGR   R  +  +   +E+VA+ND     K A+++LKYDST G F+ D++   ++ ++V+ K I     R+P N+PWG  G+D V+E TGVF   E A  H+  GAKKV+
Sbjct:    3 VKVGINGFGRIGRIVFR--NAVEHDDVEIVAVNDPFIETKYAAYMLKYDSTHGQFKGDIQHSSSNNLTVNNKTIHFYQERDPANIPWGKHGVDYVVESTGVFTTTEKAKAHLSGGAKKVI 120          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3PC_LEIME (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Leishmania mexicana GN=GAPC PE=3 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 8.277e-22
Identity = 54/119 (45.38%), Postives = 80/119 (67.23%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            +KV INGFGRIGR   R    R D  +E+V IND    +  ++ LKYDST G F+  V+ +    + V+GK I+V S R+P NL W ++G+++V+E TG+F+ +E A KHI+AGA++V+
Sbjct:    2 VKVGINGFGRIGRVVFRAAQMRPD--IEIVGINDLLDAEYMAYSLKYDSTHGRFDGTVEVI-KGALVVNGKSIRVTSERDPANLKWDEIGVEVVVESTGLFLTQETAHKHIEAGARRVV 117          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P_COCP7 (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides posadasii (strain C735) GN=GPD PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.081e-21
Identity = 56/120 (46.67%), Postives = 76/120 (63.33%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            +KV INGFGRIGR   R  +  +   +E+VA+ND       A+++LKYDST G F+ DVK    +G+ VDGK ++    R+P N+PW + G D VIE TGVF   E A  H++ GAKKV+
Sbjct:    3 VKVGINGFGRIGRIVFR--NAVEHPEVEIVAVNDPFIETHYAAYMLKYDSTHGRFKGDVK-FSENGLDVDGKHVRFYQERDPANIPWAETGADYVIESTGVFTTTEKASAHLKGGAKKVI 119          
The following BLAST results are available for this feature:
BLAST of FC869119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3P1_ECO572.178e-2248.74Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_BACCE2.178e-2245.76Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]
E4PD_PSEHT2.178e-2248.33D-erythrose-4-phosphate dehydrogenase OS=Pseudoalt... [more]
G3P_STRAU2.845e-2249.17Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_CLOPA2.845e-2250.00Glyceraldehyde-3-phosphate dehydrogenase OS=Clostr... [more]
G3P_MYCPN3.715e-2246.03Glyceraldehyde-3-phosphate dehydrogenase OS=Mycopl... [more]
G3P2_RHOSH3.715e-2249.58Glyceraldehyde-3-phosphate dehydrogenase B OS=Rhod... [more]
G3P_PARBA8.277e-2244.17Glyceraldehyde-3-phosphate dehydrogenase OS=Paraco... [more]
G3PC_LEIME8.277e-2245.38Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_COCP71.081e-2146.67Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31008G02EF AbioticL1 Citrus clementina cDNA clone C31008G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869119 ID=FC869119; Name=FC869119; organism=Citrus clementina; type=EST; length=615bp
TCAGCTTAGCGACCACGGCTGGCTCTTGCTTGCATCATCCAGCAAATACC
TATCATGGCTTCGGCCACTCTCTCTGTAGCCAAATCAGCTCTTCAGGGAA
ATGGTAAGGGATTCTCAGAATTCTCAGGTCTACGCAACTCTGCAAGCCTT
CCTTTTGGCAGGAAATCTTCTGATGACTTCCATTCAGTCATTGCTCTCCA
GACCTCTGCTTTAGGAAGCAGCAGCAGCGGGTACAGGAAGGTTGCTGCTC
AGGCAAAGCTGAAGGTTGCAATCAATGGGTTTGGTAGAATTGGTAGGAAC
TTCTTGAGGTGCTGGCACGGCCGCAAGGACTCTCCACTTGAAGTCGTTGC
CATCAATGACACCGGAGGTGTCAAGCAGGCCTCTCACCTCCTCAAGTACG
ACTCCACCCTTGGCATCTTTGAAGCCGATGTTAAACCAGTTGGTACTGAT
GGCATCTCTGTTGATGGCAAGGTCATCCAGGTTGTTTCTAACCGCAACCC
CGTCAATCTCCCCTGGGGGGACTTGGGCATCGACCTTGTGATTGAAGGGA
CAGGAGTGTTTGTAGACAGAGAGGGTGCGGGCAAGCACATTCAGGCTGGT
GCCAAGAAAGTACTT
back to top