FC869119

Overview
NameFC869119
Unique NameFC869119
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length615
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC869119_ssr217 microsatellite FC869119_ssr217:217..228. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5796 contig Ccv1_Contig5796:55..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P_MYCGE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoplasma genitalium GN=gapA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.561e-20
Identity = 57/124 (45.97%), Postives = 77/124 (62.10%), Query Frame = 1
Query:  244 AAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            A    +KVAINGFGRIGR   R    + +  +EVVAIND    +  +HLLKYDS  G  +  +  V  + + +D K + V S ++P NLPW +  ID+VIE TG FV  EGA  H++AGAK+V+
Sbjct:    3 AKNRTIKVAINGFGRIGRLVFRSLLSKAN--VEVVAINDLTQPEVLAHLLKYDSAHGELKRKIT-VKQNILQIDRKKVYVFSEKDPQNLPWDEHDIDVVIESTGRFVSEEGASLHLKAGAKRVI 123          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P_LACLA (Glyceraldehyde-3-phosphate dehydrogenase OS=Lactococcus lactis subsp. lactis GN=gap PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.561e-20
Identity = 56/120 (46.67%), Postives = 76/120 (63.33%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQ-AGAKKVL 615
            +KV INGFGRIGR  LR    ++   +EV  IND       +HLLKYD+T G F+  V+ V  DG  V+GK ++V + RNP ++ W D G+++V+E TG F  +E A KH+   GAKKVL
Sbjct:    3 VKVGINGFGRIGRLALR--RIQEVEGVEVAHINDLTDPAMLAHLLKYDTTQGRFKGTVE-VKEDGFDVNGKFVKVTAERNPEDIQWADSGVEIVLEATGFFATKEKAEKHLHPGGAKKVL 119          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P1_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Trichoderma koningii GN=gpd1 PE=1 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 2.039e-20
Identity = 55/119 (46.22%), Postives = 73/119 (61.34%), Query Frame = 1
Query:  262 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            KV INGFGRIGR  LR  +  +   +EVVA+ND       A ++ KYDST G F+ D+K  G D + +DGK I+    R+P N+PW D G + ++E TGVF   E A  H + GAKKV+
Sbjct:    4 KVGINGFGRIGRVVLR--NALETGAVEVVALNDPFIEPHYAEYMFKYDSTHGRFKGDIKVDGKD-LVIDGKRIKFYQERDPANIPWKDSGAEYIVESTGVFTTTEKASAHFKGGAKKVI 119          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P1_STAES (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.663e-20
Identity = 58/119 (48.74%), Postives = 73/119 (61.34%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            +KVAINGFGRIGR   R    +    LEVVA+ND       +HLLKYD+  G F  +V+ +   G  V+GK I+     +   LPWGDL ID+V+E TG + D+E A  HI AGAKKVL
Sbjct:    3 IKVAINGFGRIGRLAFR--RIQDVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVI-EGGFRVNGKEIKSFDEPDAGKLPWGDLDIDVVLECTGFYTDKEKAQAHIDAGAKKVL 118          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P1_STAEQ (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.663e-20
Identity = 58/119 (48.74%), Postives = 73/119 (61.34%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            +KVAINGFGRIGR   R    +    LEVVA+ND       +HLLKYD+  G F  +V+ +   G  V+GK I+     +   LPWGDL ID+V+E TG + D+E A  HI AGAKKVL
Sbjct:    3 IKVAINGFGRIGRLAFR--RIQDVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVI-EGGFRVNGKEIKSFDEPDAGKLPWGDLDIDVVLECTGFYTDKEKAQAHIDAGAKKVL 118          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P_COLLN (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum lindemuthianum GN=GPDA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.477e-20
Identity = 53/122 (43.44%), Postives = 77/122 (63.11%), Query Frame = 1
Query:  253 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            A +KV INGFGRIGR   R  +  +   +E+VA+ND     K A+++LKYDST GIF  ++   G D + ++GK ++  + R+P  +PW + G D V+E TGVF   + A  H+Q GAKKV+
Sbjct:    2 APIKVGINGFGRIGRIVFR--NAVEHPDVEIVAVNDPFIETKYAAYMLKYDSTHGIFNGEIAQDGND-LVINGKKVKFYTERDPAVIPWKETGADYVVESTGVFTTIDKAKAHLQGGAKKVI 120          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P1_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=TDH1 PE=1 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 3.477e-20
Identity = 57/120 (47.50%), Postives = 76/120 (63.33%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            +++AINGFGRIGR  LR    RKD  +EVVA+ND       A++++KYDST G ++  V       I +DG  I     R+P NLPWG L ID+ ++ TGVF + + A KHI AGAKKV+
Sbjct:    2 IRIAINGFGRIGRLVLRLALQRKD--IEVVAVNDPFISNDYAAYMVKYDSTHGRYKGTVSH-DDKHIIIDGVKIATYQERDPANLPWGSLKIDVAVDSTGVFKELDTAQKHIDAGAKKVV 118          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: E4PD_PROMH (D-erythrose-4-phosphate dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=epd PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.477e-20
Identity = 54/120 (45.00%), Postives = 76/120 (63.33%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            ++VAINGFGRIGRN LR  +   K + + VVAIN+       +HLLKYDS+ G F  D++ V  D + V    I++  + +  +LPWG+LGID+V++ +GV+  R     HI  GAKKVL
Sbjct:    3 IRVAINGFGRIGRNVLRALYESGKRAEISVVAINELADATGIAHLLKYDSSHGRFAWDIR-VNNDLLQVGDDAIRLFHHADIADLPWGELGIDVVLDCSGVYGSRADGEAHIAQGAKKVL 121          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P_THEAQ (Glyceraldehyde-3-phosphate dehydrogenase OS=Thermus aquaticus GN=gap PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 4.542e-20
Identity = 53/119 (44.54%), Postives = 70/119 (58.82%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            +KV INGFGRIGR   R  H R    +EV  IND    K  +HLLKYDS    F  +V       + VDGK I+  + ++P  +PW + G+ +VIE TGVF D + A  H++ GAKKV+
Sbjct:    1 MKVGINGFGRIGRQVFRILHSRG---VEVALINDLTDNKTLAHLLKYDSIYHRFPGEVA-YDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVI 115          
BLAST of FC869119 vs. ExPASy Swiss-Prot
Match: G3P1_STAAW (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain MW2) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.542e-20
Identity = 57/119 (47.90%), Postives = 75/119 (63.03%), Query Frame = 1
Query:  259 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 615
            +KVAINGFGRIGR   R    ++   LEVVA+ND       +HLLKYD+  G F  +V+ V   G  V+GK ++  S  +   LPW DL ID+V+E TG + D++ A  HI+AGAKKVL
Sbjct:    3 VKVAINGFGRIGRLAFR--RIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVD-GGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVL 118          
The following BLAST results are available for this feature:
BLAST of FC869119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3P_MYCGE1.561e-2045.97Glyceraldehyde-3-phosphate dehydrogenase OS=Mycopl... [more]
G3P_LACLA1.561e-2046.67Glyceraldehyde-3-phosphate dehydrogenase OS=Lactoc... [more]
G3P1_TRIKO2.039e-2046.22Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Tric... [more]
G3P1_STAES2.663e-2048.74Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAEQ2.663e-2048.74Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P_COLLN3.477e-2043.44Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P1_YEAST3.477e-2047.50Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Sacc... [more]
E4PD_PROMH3.477e-2045.00D-erythrose-4-phosphate dehydrogenase OS=Proteus m... [more]
G3P_THEAQ4.542e-2044.54Glyceraldehyde-3-phosphate dehydrogenase OS=Thermu... [more]
G3P1_STAAW4.542e-2047.90Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]

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Properties
Property NameValue
Genbank descriptionC31008G02EF AbioticL1 Citrus clementina cDNA clone C31008G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869119 ID=FC869119; Name=FC869119; organism=Citrus clementina; type=EST; length=615bp
TCAGCTTAGCGACCACGGCTGGCTCTTGCTTGCATCATCCAGCAAATACC
TATCATGGCTTCGGCCACTCTCTCTGTAGCCAAATCAGCTCTTCAGGGAA
ATGGTAAGGGATTCTCAGAATTCTCAGGTCTACGCAACTCTGCAAGCCTT
CCTTTTGGCAGGAAATCTTCTGATGACTTCCATTCAGTCATTGCTCTCCA
GACCTCTGCTTTAGGAAGCAGCAGCAGCGGGTACAGGAAGGTTGCTGCTC
AGGCAAAGCTGAAGGTTGCAATCAATGGGTTTGGTAGAATTGGTAGGAAC
TTCTTGAGGTGCTGGCACGGCCGCAAGGACTCTCCACTTGAAGTCGTTGC
CATCAATGACACCGGAGGTGTCAAGCAGGCCTCTCACCTCCTCAAGTACG
ACTCCACCCTTGGCATCTTTGAAGCCGATGTTAAACCAGTTGGTACTGAT
GGCATCTCTGTTGATGGCAAGGTCATCCAGGTTGTTTCTAACCGCAACCC
CGTCAATCTCCCCTGGGGGGACTTGGGCATCGACCTTGTGATTGAAGGGA
CAGGAGTGTTTGTAGACAGAGAGGGTGCGGGCAAGCACATTCAGGCTGGT
GCCAAGAAAGTACTT
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