FC869120

Overview
NameFC869120
Unique NameFC869120
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9458 contig Ccv1_Contig9458:1..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: WWOX_MOUSE (WW domain-containing oxidoreductase OS=Mus musculus GN=Wwox PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.074e-18
Identity = 56/147 (38.10%), Postives = 82/147 (55.78%), Query Frame = 1
Query:  226 EDMQAR-IEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSS 663
            E +Q R   GK  +VTGAN+GIG+ TA+  A  GA V + CR+  +   A+S I  +     V     DL+ +  ++ FA  F  K+  +HVLV NAG       +T +G E  F VN LG + + +L+  +L +++P ARVI VSS
Sbjct:  115 EILQGRDFTGKVVLVTGANSGIGFETAKSFALHGAHVILACRNLSRASEAVSRILEEWHKAKVEAMTLDLAVLRSVQHFAEAFKAKNVSLHVLVCNAGTFALPWGLTKDGLETTFQVNHLGHFYLVQLLQDVLCRSSP-ARVIVVSS 260          
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: RDH14_HUMAN (Retinol dehydrogenase 14 OS=Homo sapiens GN=RDH14 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.074e-18
Identity = 51/153 (33.33%), Postives = 86/153 (56.21%), Query Frame = 1
Query:  244 IEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSK-------------TGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSS 663
            + GK  ++TGAN+G+G ATA  L   GA V M CR + + E A   +R +             +G   + +   DL+S+  +++F      ++  + VL+NNAG+ +   + T +GFE+ F VN LG + +T L++ LL+ +AP +R++ VSS
Sbjct:   41 MHGKTVLITGANSGLGRATAAELLRLGARVIMGCRDRARAEEAAGQLRRELRQAAECGPEPGVSGVGELIVRELDLASLRSVRAFCQEMLQEEPRLDVLINNAGIFQCPYMKTEDGFEMQFGVNHLGHFLLTNLLLGLLKSSAP-SRIVVVSS 192          
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: PORA_ARATH (Protochlorophyllide reductase A, chloroplastic OS=Arabidopsis thaliana GN=PORA PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.782e-14
Identity = 56/151 (37.09%), Postives = 82/151 (54.30%), Query Frame = 1
Query:  229 DMQARIEGKNCVVTGANAGIGYATAEGLASRGA-TVYMVCRSKEKGE-TALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLE---NNRLITSEGFELNFAVNVLGTYTITELMVPLLEKA-APDARVITVSS 663
            D +  +   N VVTGA++G+G ATA+ LA  G   V M CR   K E  A SA   K     +HL   DL+S+  ++ F + F   + P+ VLV NA V +   N    T+EGFEL+  +N LG + ++ L++  L+ +  P  R+I V S
Sbjct:   85 DRKKTLRKGNVVVTGASSGLGLATAKALAETGKWHVIMACRDFLKAERAAQSAGMPKDSYTVMHL---DLASLDSVRQFVDNFRRAEMPLDVLVCNAAVYQPTANQPTFTAEGFELSVGINHLGHFLLSRLLIDDLKNSDYPSKRLIIVGS 232          
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: PORC_ARATH (Protochlorophyllide reductase C, chloroplastic OS=Arabidopsis thaliana GN=PORC PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.057e-13
Identity = 55/153 (35.95%), Postives = 84/153 (54.90%), Query Frame = 1
Query:  223 PEDMQARIEGKNCVVTGANAGIGYATAEGLASRGA-TVYMVCRSKEKGETALSAI-RSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLE---NNRLITSEGFELNFAVNVLGTYTITELMVPLLEKA-APDARVITVSS 663
            PE  +   +G   V+TGA++G+G ATA+ LA  G   V M CR+  K E A  ++  SK     +HL   DL+S+  +K F   F   ++P+ VLV NA V +        T+EGFE++   N LG + ++ L++  L+K+  P  R+I V S
Sbjct:   81 PEQKKTERKG-TAVITGASSGLGLATAKALADTGKWHVIMACRNFLKAEKAARSVGMSKEDYTVMHL---DLASLESVKQFVENFRRTEQPLDVLVCNAAVYQPTAKEPSFTAEGFEISVGTNHLGHFLLSRLLLDDLKKSDYPSKRMIIVGS 229          
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: PORB_ARATH (Protochlorophyllide reductase B, chloroplastic OS=Arabidopsis thaliana GN=PORB PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 3.076e-13
Identity = 55/154 (35.71%), Postives = 81/154 (52.60%), Query Frame = 1
Query:  220 KPEDMQARIEGKNCVVTGANAGIGYATAEGLASRGA-TVYMVCRSKEKGETALSAI-RSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGV---LENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKA-APDARVITVSS 663
            K  D +  +   N VVTGA++G+G ATA+ LA  G   V M CR   K E A  ++   K     +HL   DL+S+  ++ F + F   + P+ VLV NA V          ++EGFEL+ A N LG + +  L++  L+K+  P  R+I V S
Sbjct:   78 KSVDGKKTLRKGNVVVTGASSGLGLATAKALAETGKWNVIMACRDFLKAERAAKSVGMPKDSYTVMHL---DLASLDSVRQFVDNFRRTETPLDVLVCNAAVYFPTAKEPTYSAEGFELSVATNHLGHFLLARLLLDDLKKSDYPSKRLIIVGS 228          
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: POR_PEA (Protochlorophyllide reductase, chloroplastic OS=Pisum sativum GN=3PCR PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 49/141 (34.75%), Postives = 77/141 (54.61%), Query Frame = 1
Query:  256 NCVVTGANAGIGYATAEGLASRGA-TVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGV---LENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKA-APDARVITVSS 663
            N V+TGA++G+G ATA+ LA  G   V M CR   K   A +A  +    EN  +   DL+S+  ++ F + F   + P+ VL+NNA V          T++GFE++   N LG + ++ L++  L+K+  P  R+I V S
Sbjct:   88 NVVITGASSGLGLATAKALAESGKWHVIMACRDYLK--AARAAKSAGLAKENYTIMHLDLASLDSVRQFVDNFRRSEMPLDVLINNAAVYFPTAKEPSFTADGFEISVGTNHLGHFLLSRLLLEDLKKSDYPSKRLIIVGS 226          
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: PORA_CUCSA (Protochlorophyllide reductase, chloroplastic OS=Cucumis sativus GN=PORA PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 51/139 (36.69%), Postives = 75/139 (53.96%), Query Frame = 1
Query:  262 VVTGANAGIGYATAEGLASRGA-TVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGV---LENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAA-PDARVITVSS 663
            V+TGA++G+G ATA+ LA  G   V M CR   K E A  A  +    EN  +   DL+S+  ++ F + F    +P+ VLV NA V          T+EGFEL+   N LG + ++ L++  L K++ P  R+I V S
Sbjct:   90 VITGASSGLGLATAKALAETGKWHVIMACRDFLKAERA--AKSAGITKENYTVMHLDLASLDSVRQFVDNFRQSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLEDLNKSSYPSKRLIIVGS 226          
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: OXIR_STRLI (Probable oxidoreductase OS=Streptomyces lividans PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.604e-12
Identity = 50/149 (33.56%), Postives = 74/149 (49.66%), Query Frame = 1
Query:  244 IEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLE-NNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSSGGMYTAHL 687
            + G+  VVTG  +G+G  T   LA+ GA V +  R  +  E  +    +  G   VH E  DLS +  + SFA  +     P+ +LV NAG++    R +T  G+E+  A N LG + +   +   L  A   AR++ VSSG    AHL
Sbjct:    3 LTGRRAVVTGGASGLGAETVRALAAAGAEVTIATRHPQSAEPLVQE-AAAAGAGRVHAEALDLSDVASVDSFARAWR---GPLDILVANAGIMALPTRTLTPYGWEMQLATNYLGHFALATGLHAALRDAG-SARIVVVSSG----AHL 142          
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: POR_MARPA (Protochlorophyllide reductase, chloroplastic OS=Marchantia paleacea GN=PORA PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.401e-12
Identity = 48/141 (34.04%), Postives = 76/141 (53.90%), Query Frame = 1
Query:  259 CVVTGANAGIGYATAEGLASRGA-TVYMVCRSKEKGETALSAIR-SKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGV---LENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPD-ARVITVSS 663
            C++TGA++G+G ATA+ LA  G   V M CR   K E A  ++   K     +H   CDL+S   +++F + F   ++ + VLV NA V    +     ++EGFEL+   N +G + +  L++  L+KA     R+I V S
Sbjct:  148 CIITGASSGLGLATAKALADTGEWHVIMACRDFLKAERAARSVGIPKDSYTVIH---CDLASFDSVRAFVDNFRRTERQLDVLVCNAAVYFPTDKEPKFSAEGFELSVGTNHMGHFLLARLLMEDLQKAKDSLKRMIIVGS 285          
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: POR_DAUCA (Protochlorophyllide reductase, chloroplastic OS=Daucus carota GN=POR1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.441e-12
Identity = 54/158 (34.18%), Postives = 81/158 (51.27%), Query Frame = 1
Query:  223 PEDMQARIEGK------NCVVTGANAGIGYATAEGLASRGA-TVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGV---LENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKA-APDARVITVSS 663
            P   +A  EGK      + ++TGA++G+G ATA+ LA  G   V M CR   K E A  A  +    EN  +   DL+S+  ++ F   F   ++P+ VLV NA V          T++GFEL+   N LG + ++ L++  L K+  P  R+I V S
Sbjct:   70 PSVNRATGEGKKTLRKGSVIITGASSGLGLATAKALAETGKWHVIMACRDFLKAERA--AKSAGMPKENYTIMHLDLASLDSVRQFVETFRRSERPLDVLVCNAAVYFPTAKEPTYTADGFELSVGTNHLGHFLLSRLLLDDLNKSDYPSKRLIIVGS 225          
The following BLAST results are available for this feature:
BLAST of FC869120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
WWOX_MOUSE7.074e-1838.10WW domain-containing oxidoreductase OS=Mus musculu... [more]
RDH14_HUMAN7.074e-1833.33Retinol dehydrogenase 14 OS=Homo sapiens GN=RDH14 ... [more]
PORA_ARATH2.782e-1437.09Protochlorophyllide reductase A, chloroplastic OS=... [more]
PORC_ARATH1.057e-1335.95Protochlorophyllide reductase C, chloroplastic OS=... [more]
PORB_ARATH3.076e-1335.71Protochlorophyllide reductase B, chloroplastic OS=... [more]
POR_PEA4.017e-1334.75Protochlorophyllide reductase, chloroplastic OS=Pi... [more]
PORA_CUCSA1.169e-1236.69Protochlorophyllide reductase, chloroplastic OS=Cu... [more]
OXIR_STRLI2.604e-1233.56Probable oxidoreductase OS=Streptomyces lividans P... [more]
POR_MARPA3.401e-1234.04Protochlorophyllide reductase, chloroplastic OS=Ma... [more]
POR_DAUCA4.441e-1234.18Protochlorophyllide reductase, chloroplastic OS=Da... [more]

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Properties
Property NameValue
Genbank descriptionC31008G03EF AbioticL1 Citrus clementina cDNA clone C31008G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869120 ID=FC869120; Name=FC869120; organism=Citrus clementina; type=EST; length=697bp
GGAAAACAGATTTCACCCACACTCCTCTCAATGTTCCTCCTCCAAGTACA
TCAAATTCACACCTTGAACATAGTAAAATATTTGCTATATTACCAACGAT
TAATTTCGTTTAACAGAATTTGATTTTTGTTTCAACAGAAATGGAGAGTT
GCAGCTTTTGGTGTGTATGGCTACATGAATTTCACAAAAAACGGCTTCAA
AGAACACTCCAAAAATTTCAAACCGGAAGATATGCAAGCTCGCATAGAAG
GGAAAAATTGCGTAGTTACAGGAGCAAATGCTGGCATTGGTTATGCTACC
GCTGAGGGTCTTGCTTCACGTGGGGCCACTGTCTATATGGTTTGTCGCAG
TAAAGAGAAAGGAGAAACTGCTCTTTCTGCAATTCGATCTAAGACAGGCA
ATGAAAATGTTCATCTGGAGCTGTGCGATCTTTCATCTATCACCGAGATC
AAGTCTTTTGCGAACAGGTTTTCATTAAAGGATAAGCCAGTTCATGTTTT
GGTTAACAATGCTGGCGTGCTTGAAAATAACCGATTAATCACATCTGAAG
GATTTGAGTTAAACTTTGCTGTAAATGTATTGGGCACATACACCATAACA
GAATTAATGGTTCCTTTGCTGGAGAAAGCTGCACCTGATGCTCGAGTGAT
CACAGTTTCCTCTGGAGGAATGTATACAGCTCACTTAACTGATGATC
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