FC869120

Overview
NameFC869120
Unique NameFC869120
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: TRN2_HYONI (Tropinone reductase 2 OS=Hyoscyamus niger GN=TR2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.801e-12
Identity = 51/146 (34.93%), Postives = 82/146 (56.16%), Query Frame = 1
Query:  244 IEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITE----IKSFANRFSLKDKPVHVLVNNAGVL--ENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSS 663
            +EG   +VTG + GIGY   E LA+ GA+VY   R++++ +  L+  RSK    NV   +CDLSS +E    +K+ +N F  K   +++LVNNAG++  +  +  T E +    ++N    Y ++ L  P L KA+    V+ +SS
Sbjct:    7 LEGCTALVTGGSRGIGYGIVEELANLGASVYTCSRNQKELDECLTQWRSK--GFNVEASVCDLSSRSEREEFMKTVSNHFHGK---LNILVNNAGIVIYKEAKDYTMEDYSHIMSINFEAAYHLSVLAHPFL-KASERGNVVFISS 146          
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: TRN2_DATST (Tropinone reductase 2 OS=Datura stramonium GN=TR2 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 52/146 (35.62%), Postives = 80/146 (54.79%), Query Frame = 1
Query:  244 IEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITE----IKSFANRFSLKDKPVHVLVNNAGVL--ENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSS 663
            +EG   +VTG + GIGY   E LAS GA+VY   R++++    L+  RSK     V   +CDLSS +E    + + AN F  K   +++LVNNAG++  +  +  T E + L  ++N    Y ++ L  P L KA+    V+ +SS
Sbjct:    7 LEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK--GFKVEASVCDLSSRSERQELMNTVANHFHGK---LNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFL-KASERGNVVFISS 146          
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: YXBG_BACSU (Uncharacterized oxidoreductase yxbG OS=Bacillus subtilis GN=yxbG PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 45/131 (34.35%), Postives = 75/131 (57.25%), Query Frame = 1
Query:  241 RIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGN-ENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITS---EGFELNFAVNVLGTYTITELMVPLL 621
            R+E K  V+TGA  GIG ATAE  A+ GA V +   +K++ E  + AIR   G  E+ HL++ D +S   +K+FA++       + +L NNAGV +    +     + F+   AV++ GT+  ++ ++PL+
Sbjct:    3 RLENKTAVITGAATGIGQATAEVFANEGARVIIGDINKDQMEETVDAIRKNGGQAESFHLDVSDENS---VKAFADQIKDACGTIDILFNNAGVDQEGGKVHEYPVDLFDRIIAVDLRGTFLCSKYLIPLM 130          
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: YEE6_SCHPO (Uncharacterized oxidoreductase C19A8.06 OS=Schizosaccharomyces pombe GN=SPAC19A8.06 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 43/136 (31.62%), Postives = 77/136 (56.62%), Query Frame = 1
Query:  235 QARIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETA--LSAIRSKTGNENVHLELCDLSSITEIKSFANRF--SLKDKPVHVLVNNAGVL---ENNRLITSEGFELNFAVNVLGTYTITELMVPLL 621
            + ++ G   +VTG ++GIG    E LAS GA V ++ R++    T   +  +R +T N+ ++ E+CDLSS+  ++ FA ++      + + ++V  +GVL     +R  T EG EL +A N LG Y +  ++ P++
Sbjct:   70 ERKMNGMVVMVTGGSSGIGQVVVEKLASLGAQVVILLRTEPDQFTVDYIMDLRKRTKNQLIYTEVCDLSSMLSVRKFATKWIDCTPIRRLDMIVLCSGVLLPPFMDRQTTEEGVELQWATNFLGPYQLLRILRPVI 205          
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: TRN1_DATST (Tropinone reductase 1 OS=Datura stramonium GN=TR1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 51/152 (33.55%), Postives = 83/152 (54.61%), Query Frame = 1
Query:  244 IEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITE----IKSFANRFSLKDKPVHVLVNNAGVL--ENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSSGGMYTA 681
            ++G   +VTG + GIGYA  E LA  GA VY   R++++ +  L   R K    NV   +CDL S TE    +++ A+ F   D  +++LVNNAGV+  +  +  T + + +    N    Y ++++  PLL KA+ +  VI +SS   ++A
Sbjct:   19 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREK--GLNVEGSVCDLLSRTERDKLMQTVAHVF---DGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLL-KASQNGNVIFLSSIAGFSA 164          
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: PORB_HORVU (Protochlorophyllide reductase B, chloroplastic OS=Hordeum vulgare GN=PORB PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 50/142 (35.21%), Postives = 72/142 (50.70%), Query Frame = 1
Query:  256 NCVVTGANAGIGYATAEGLASRGA-TVYMVCRSKEKGETALSAIRSKTGNEN-VHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLE---NNRLITSEGFELNFAVNVLGTYTIT-ELMVPLLEKAAPDARVITVSS 663
            N ++TGA++G+G ATA+ LA  G   V M CR   K   A  A     G+   VHL   DL+S+  ++ F       D P+ V+V NA V +        T++GFE++  VN LG + +  EL+  L     P  R+I V S
Sbjct:   84 NAIITGASSGLGLATAKALAESGKWHVIMACRDYLKTARAARAAGMPKGSYTIVHL---DLASLDSVRQFVKNVRQLDMPIDVVVCNAAVYQPTAKEPSFTADGFEMSVGVNHLGHFLLARELLEDLKASDYPSKRLIIVGS 222          
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: PORA_ORYSJ (Protochlorophyllide reductase A, chloroplastic OS=Oryza sativa subsp. japonica GN=PORA PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 48/140 (34.29%), Postives = 73/140 (52.14%), Query Frame = 1
Query:  262 VVTGANAGIGYATAEGLASRGA-TVYMVCRSKEKGETALSAIRSKTGNENV-HLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLE---NNRLITSEGFELNFAVNVLGTYTITELMVPLLEKA-APDARVITVSS 663
            V+TGA++G+G A A+ LA  G   V M CR   K  TA  A     G+  V HL   DL+S+  ++ F + F     P+  LV NA +          T++G+E++  VN LG + +  LM+  L+K+  P  R+I + S
Sbjct:   77 VITGASSGLGLAAAKALAETGKWHVVMACRDFLKAATAAKAAGMAAGSYTVMHL---DLASLDSVRQFVDNFRRSGMPLDALVCNAAIYRPTARQPTFTADGYEMSVGVNHLGHFLLARLMLDDLKKSDYPSRRLIILGS 213          
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: OXIR_STRAT (Probable oxidoreductase OS=Streptomyces antibioticus PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 48/149 (32.21%), Postives = 72/149 (48.32%), Query Frame = 1
Query:  244 IEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLE-NNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSSGGMYTAHL 687
            + G+  VVTG  +G+G  T   LA+ GA V +  R     E  +  + +  G   V  E  DLS    ++SFA  +     P+ +LV NAG++    R +   G+E+  A N LG + +   +   L  A   AR++ VSSG    AHL
Sbjct:    3 LTGRRAVVTGGASGLGAETVRALAAAGAEVTVATRRPLSAEPLVQELAAAGGAGRVTAEALDLSDPASVESFARAWR---GPLDILVANAGIMALPTRTLAPNGWEMQLATNYLGHFALATGLHAALRDAG-SARIVVVSSG----AHL 143          
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: WWOX_DROME (WW domain-containing oxidoreductase OS=Drosophila melanogaster GN=Wwox PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 43/150 (28.67%), Postives = 66/150 (44.00%), Query Frame = 1
Query:  244 IEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSK--TGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSSGGMYTAHL 687
            + G+  ++TGAN GIGY TA  LA  G  +   CR++   E A+  I  +             DLSS+  ++ F          +  L+ NAGV       T +G E  F V+ L  + +T  +  L +      R+I +SS     A+L
Sbjct:  119 LHGRTALITGANCGIGYETARSLAHHGCEIIFACRNRSSAEAAIERIAQERPAARSRCRFAALDLSSLRSVQRFVEEIKQSVSHIDYLILNAGVFALPYTRTVDGLETTFQVSHLSHFYLTLQLETLFDY---KTRIIVLSSESHRFANL 265          
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: POR_AVESA (Protochlorophyllide reductase (Fragment) OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 48/140 (34.29%), Postives = 73/140 (52.14%), Query Frame = 1
Query:  262 VVTGANAGIGYATAEGLASRGA-TVYMVCRSKEKGETALSAIRSKTGNENV-HLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLE---NNRLITSEGFELNFAVNVLGTYTITELMVPLLEKA-APDARVITVSS 663
            V+TGA++G+G A A+ LA  G   V M CR   K   A  A     G+  V HL   DL+S+  ++ F + F   + P+ VLV NA +          T+EG E++  VN LG + +  L++  L+K+  P  R++ V S
Sbjct:    3 VITGASSGLGLAAAKALAETGKWHVVMACRDFLKASKAAKAAGMADGSYTVMHL---DLASLDSVRQFVDAFRRAEMPLDVLVCNAAIYRPTARKPTFTAEGVEMSVGVNHLGHFLLARLLLEDLQKSDYPSRRLVIVGS 139          
The following BLAST results are available for this feature:
BLAST of FC869120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
TRN2_HYONI5.801e-1234.93Tropinone reductase 2 OS=Hyoscyamus niger GN=TR2 P... [more]
TRN2_DATST7.576e-1235.62Tropinone reductase 2 OS=Datura stramonium GN=TR2 ... [more]
YXBG_BACSU1.292e-1134.35Uncharacterized oxidoreductase yxbG OS=Bacillus su... [more]
YEE6_SCHPO1.688e-1131.62Uncharacterized oxidoreductase C19A8.06 OS=Schizos... [more]
TRN1_DATST2.879e-1133.55Tropinone reductase 1 OS=Datura stramonium GN=TR1 ... [more]
PORB_HORVU2.879e-1135.21Protochlorophyllide reductase B, chloroplastic OS=... [more]
PORA_ORYSJ2.879e-1134.29Protochlorophyllide reductase A, chloroplastic OS=... [more]
OXIR_STRAT3.760e-1132.21Probable oxidoreductase OS=Streptomyces antibiotic... [more]
WWOX_DROME4.910e-1128.67WW domain-containing oxidoreductase OS=Drosophila ... [more]
POR_AVESA4.910e-1134.29Protochlorophyllide reductase (Fragment) OS=Avena ... [more]

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Properties
Property NameValue
Genbank descriptionC31008G03EF AbioticL1 Citrus clementina cDNA clone C31008G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869120 ID=FC869120; Name=FC869120; organism=Citrus clementina; type=EST; length=697bp
GGAAAACAGATTTCACCCACACTCCTCTCAATGTTCCTCCTCCAAGTACA
TCAAATTCACACCTTGAACATAGTAAAATATTTGCTATATTACCAACGAT
TAATTTCGTTTAACAGAATTTGATTTTTGTTTCAACAGAAATGGAGAGTT
GCAGCTTTTGGTGTGTATGGCTACATGAATTTCACAAAAAACGGCTTCAA
AGAACACTCCAAAAATTTCAAACCGGAAGATATGCAAGCTCGCATAGAAG
GGAAAAATTGCGTAGTTACAGGAGCAAATGCTGGCATTGGTTATGCTACC
GCTGAGGGTCTTGCTTCACGTGGGGCCACTGTCTATATGGTTTGTCGCAG
TAAAGAGAAAGGAGAAACTGCTCTTTCTGCAATTCGATCTAAGACAGGCA
ATGAAAATGTTCATCTGGAGCTGTGCGATCTTTCATCTATCACCGAGATC
AAGTCTTTTGCGAACAGGTTTTCATTAAAGGATAAGCCAGTTCATGTTTT
GGTTAACAATGCTGGCGTGCTTGAAAATAACCGATTAATCACATCTGAAG
GATTTGAGTTAAACTTTGCTGTAAATGTATTGGGCACATACACCATAACA
GAATTAATGGTTCCTTTGCTGGAGAAAGCTGCACCTGATGCTCGAGTGAT
CACAGTTTCCTCTGGAGGAATGTATACAGCTCACTTAACTGATGATC
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