FC869120

Overview
NameFC869120
Unique NameFC869120
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9458 contig Ccv1_Contig9458:1..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC869120 vs. ExPASy Swiss-Prot
Match: PORB_ORYSJ (Protochlorophyllide reductase B, chloroplastic OS=Oryza sativa subsp. japonica GN=PORB PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 50/140 (35.71%), Postives = 72/140 (51.43%), Query Frame = 1 
Query:  262 VVTGANAGIGYATAEGLASRGA-TVYMVCRSKEKGETALSAIRSKTGNEN-VHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLE---NNRLITSEGFELNFAVNVLGTYTIT-ELMVPLLEKAAPDARVITVSS 663
            V+TGA++G+G ATA+ LA  G   V M CR   K   A  A   + G+   VHL+L  L S+ +  +   R  +   PV V+V NA V +        T++GFE++  VN LG + +  EL+  L     P  R+I V S
Sbjct:   89 VITGASSGLGLATAKALAETGRWHVVMGCRDFLKASRAAKAAGMEKGSYTIVHLDLASLDSVRQFVANVRRLEM---PVDVVVCNAAVYQPTAKQPSFTADGFEMSVGVNHLGHFLLARELLADLTSSDYPSKRLIIVGS 225
The following BLAST results are available for this feature:
BLAST of FC869120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
PORB_ORYSJ6.413e-1135.71Protochlorophyllide reductase B, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31008G03EF AbioticL1 Citrus clementina cDNA clone C31008G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869120 ID=FC869120; Name=FC869120; organism=Citrus clementina; type=EST; length=697bp
GGAAAACAGATTTCACCCACACTCCTCTCAATGTTCCTCCTCCAAGTACA
TCAAATTCACACCTTGAACATAGTAAAATATTTGCTATATTACCAACGAT
TAATTTCGTTTAACAGAATTTGATTTTTGTTTCAACAGAAATGGAGAGTT
GCAGCTTTTGGTGTGTATGGCTACATGAATTTCACAAAAAACGGCTTCAA
AGAACACTCCAAAAATTTCAAACCGGAAGATATGCAAGCTCGCATAGAAG
GGAAAAATTGCGTAGTTACAGGAGCAAATGCTGGCATTGGTTATGCTACC
GCTGAGGGTCTTGCTTCACGTGGGGCCACTGTCTATATGGTTTGTCGCAG
TAAAGAGAAAGGAGAAACTGCTCTTTCTGCAATTCGATCTAAGACAGGCA
ATGAAAATGTTCATCTGGAGCTGTGCGATCTTTCATCTATCACCGAGATC
AAGTCTTTTGCGAACAGGTTTTCATTAAAGGATAAGCCAGTTCATGTTTT
GGTTAACAATGCTGGCGTGCTTGAAAATAACCGATTAATCACATCTGAAG
GATTTGAGTTAAACTTTGCTGTAAATGTATTGGGCACATACACCATAACA
GAATTAATGGTTCCTTTGCTGGAGAAAGCTGCACCTGATGCTCGAGTGAT
CACAGTTTCCTCTGGAGGAATGTATACAGCTCACTTAACTGATGATC
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